Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G1637 Papaver somniferum HOM05D007301 ORTHO05D002389 3.0e-246 854.7 439 100.0
PSO063G0660 Papaver somniferum HOM05D007301 ORTHO05D002389 1.4e-187 659.8 451 77.2
TAR623G0342 Trochodendron aralioides HOM05D007301 ORTHO05D002389 5.5e-30 136.3 271 38.4
Aqoxy1G00617 Aquilegia oxysepala HOM05D007301 ORTHO05D002389 2.4e-25 120.9 285 31.9
Gohir.D06G126100 Gossypium hirsutum HOM05D007301 ORTHO05D002389 1.3e-23 115.2 250 37.2
Gorai.010G147000 Gossypium raimondii HOM05D007301 ORTHO05D002389 1.3e-23 115.2 253 36.0
Atru.chr10.2080 Acer truncatum HOM05D007301 ORTHO05D002389 8.5e-23 112.5 240 35.4
Sabra11G0025900 Salix brachista HOM05D007301 ORTHO05D002389 1.2e-21 108.6 235 32.8
Glyma.13G250000 Glycine max HOM05D007301 ORTHO05D002389 2.0e-19 101.3 259 32.8
SGA_v2.0_scaffold7G03899 Striga asiatica HOM05D007301 ORTHO05D002389 2.6e-19 100.9 211 36.0
Potri.011G032700 Populus trichocarpa HOM05D007301 ORTHO05D002389 3.3e-19 100.5 243 37.9
CSS0002302 Camellia sinensis var. sinensis HOM05D000603 ORTHO05D002642 3.7e-18 97.1 206 38.8
COL.COLO4_31668 Corchorus olitorius HOM05D000687 ORTHO05D002389 3.7e-18 97.1 205 33.2
Migut.M01248 Erythranthe guttata HOM05D007301 ORTHO05D002389 6.3e-18 96.3 221 34.4
Atru.chr10.2091 Acer truncatum HOM05D007301 ORTHO05D002389 8.2e-18 95.9 197 36.5
Glyma.15G064200 Glycine max HOM05D007301 ORTHO05D002389 8.2e-18 95.9 250 32.8
Prupe.4G030800 Prunus persica HOM05D007301 ORTHO05D002389 8.2e-18 95.9 228 30.3
Atru.chr10.2079 Acer truncatum HOM05D007301 ORTHO05D002389 1.1e-17 95.5 197 37.6
Peaxi162Scf00931g00032 Petunia axillaris HOM05D007301 ORTHO05D002389 1.8e-17 94.7 218 35.3
Eucgr.E03612 Eucalyptus grandis HOM05D007301 ORTHO05D002389 3.1e-17 94.0 214 32.7
Phvul.006G195200 Phaseolus vulgaris HOM05D007301 ORTHO05D002389 4.1e-17 93.6 264 31.1
Cpa.g.sc871.4 Carica papaya HOM05D007301 ORTHO05D002389 5.3e-17 93.2 203 33.5
AUR62014643 Chenopodium quinoa HOM05D007301 ORTHO05D002389 5.3e-17 93.2 251 30.7
Oeu050575.1 Olea europaea HOM05D007301 ORTHO05D002389 7.0e-17 92.8 226 34.1
ClCG03G005250 Citrullus lanatus HOM05D007301 ORTHO05D002389 9.1e-17 92.4 228 32.0
AUR62012556 Chenopodium quinoa HOM05D007301 ORTHO05D002389 1.2e-16 92.0 267 30.7
Cc02_g11930 Coffea canephora HOM05D007301 ORTHO05D002389 1.2e-16 92.0 250 33.6
MBI13_g03785_MAGBIO Magnolia biondii HOM05D007301 ORTHO05D002389 2.6e-16 90.9 264 31.8
VMungo0540G0977 Vigna mungo HOM05D007301 ORTHO05D002389 2.6e-16 90.9 244 30.3
Manes.16G015600 Manihot esculenta HOM05D007301 ORTHO05D002389 5.9e-16 89.7 196 34.2
Cfa000294 Carpinus fangiana HOM05D007301 ORTHO05D002389 1.3e-15 88.6 210 34.3
Nitab4.5_0003045g0050 Nicotiana tabacum HOM05D007301 ORTHO05D002389 1.3e-15 88.6 216 32.9
CiPaw.09G153900 Carya illinoinensis HOM05D007301 ORTHO05D002389 2.9e-15 87.4 231 32.5
Ciclev10016236m.g Citrus clementina HOM05D007301 ORTHO05D002389 2.9e-15 87.4 188 34.0
PGSC0003DMG400021709 Solanum tuberosum HOM05D007301 ORTHO05D002389 2.9e-15 87.4 234 29.9
Sc05g0008310 Simmondsia chinensis HOM05D007301 ORTHO05D002389 3.8e-15 87.0 212 32.5
Haze_06639 Corylus avellana HOM05D007301 ORTHO05D002389 1.1e-14 85.5 207 34.8
Haze_06650 Corylus avellana HOM05D007301 ORTHO05D002389 1.1e-14 85.5 212 34.4
Ca_00213_v3 Cicer arietinum L. HOM05D007301 ORTHO05D002389 1.5e-14 85.1 228 30.7
DCAR_004167 Daucus carota HOM05D007301 ORTHO05D002389 3.2e-14 84.0 260 32.7
SalBow8G1107 Salvia bowleyana HOM05D007301 ORTHO05D002389 7.2e-14 82.8 192 33.9
TWI63G0057 Tripterygium wilfordii HOM05D007301 ORTHO05D002389 7.2e-14 82.8 213 31.5
Lalb_Chr15g0090181 Lupinus albus HOM05D007301 ORTHO05D002389 1.2e-13 82.0 223 30.9
Solyc02g079780.1 Solanum lycopersicum HOM05D007301 ORTHO05D002389 2.7e-13 80.9 232 29.3
Sopen02g024550 Solanum pennellii HOM05D007301 ORTHO05D002389 2.7e-13 80.9 225 28.9
Duzib235G0854 Durio zibethinus HOM05D007301 ORTHO05D002389 3.6e-13 80.5 214 34.6
Thecc.06G206100 Theobroma cacao HOM05D007301 ORTHO05D002389 8.0e-13 79.3 228 33.3
GSVIVG01006515001 Vitis vinifera HOM05D007301 ORTHO05D002389 8.0e-13 79.3 216 32.4
CANSAT56G1725 Cannabis sativa HOM05D007301 ORTHO05D002389 1.0e-12 79.0 236 29.7
QL05p077842 Quercus lobata HOM05D007301 ORTHO05D002389 1.4e-12 78.6 213 31.9
MD05G1334500 Malus domestica HOM05D007301 ORTHO05D002389 2.3e-12 77.8 213 32.4
MELO3C002521.2 Cucumis melo HOM05D007301 ORTHO05D002389 3.0e-12 77.4 239 29.3
unitig_27.g25344 Utricularia gibba HOM05D007301 ORTHO05D002389 3.0e-12 77.4 181 32.0
FvH4_3g03190 Fragaria vesca HOM05D007301 ORTHO05D002389 5.2e-12 76.6 206 29.1
FAN21G3361 Fragaria x ananassa HOM05D007301 ORTHO05D002389 6.7e-12 76.3 198 28.8
Dinv18959 Davidia involucrata HOM05D000603 ORTHO05D002642 1.5e-11 75.1 174 28.2
Lj6g0023608 Lotus japonicus HOM05D007301 ORTHO05D002389 1.5e-11 75.1 248 33.5
Gohir.A06G122000 Gossypium hirsutum HOM05D007301 ORTHO05D002389 2.0e-11 74.7 183 35.5
Medtr2g010980 Medicago truncatula HOM05D007301 ORTHO05D002389 3.3e-11 73.9 192 32.3
FAN25G3745 Fragaria x ananassa HOM05D007301 ORTHO05D002389 4.4e-11 73.6 209 29.2
arahy.Tifrunner.gnm1.ann1.1PF2AY Arachis hypogaea HOM05D007301 ORTHO05D002389 2.2e-10 71.2 262 27.5
BcaB03g13255 Brassica carinata HOM05D007301 ORTHO05D002389 2.2e-10 71.2 228 31.6
CAN.G424.85 Capsicum annuum HOM05D007301 ORTHO05D002389 2.2e-10 71.2 265 27.9
Dinv17861 Davidia involucrata HOM05D007301 ORTHO05D002389 2.2e-10 71.2 252 29.0
Sed0025707 Sechium edule HOM05D007301 ORTHO05D002389 3.7e-10 70.5 190 32.6
Nn2g15924 Nelumbo nucifera HOM05D007301 ORTHO05D002389 1.1e-09 68.9 252 28.6
RcHm_v2.0_Chr5g0004821 Rosa chinensis HOM05D007301 ORTHO05D002389 1.1e-09 68.9 196 28.6
Sp1g10080 Schrenkiella parvula HOM05D007301 ORTHO05D002389 1.4e-09 68.6 203 31.0
BcaC07g38666 Brassica carinata HOM05D007301 ORTHO05D002389 1.8e-09 68.2 222 32.9
BolC8t49099H Brassica oleracea HOM05D007301 ORTHO05D002389 1.8e-09 68.2 222 32.9
PGR042G3055 Punica granatum HOM05D007301 ORTHO05D002389 1.2e-08 65.5 236 28.0
Psat1g210680 Pisum sativum HOM05D007301 ORTHO05D002389 1.6e-08 65.1 226 28.3
Ah.09g236990 Amaranthus hybridus HOM05D007301 ORTHO05D002389 2.7e-08 64.3 53 56.6
AUR62024487 Chenopodium quinoa HOM05D004339 ORTHO05D002389 7.7e-08 62.8 40 62.5
CsaV3_1G011450 Cucumis sativus L. HOM05D007301 ORTHO05D002389 7.7e-08 62.8 236 25.8
THA.LOC104809531 Tarenaya hassleriana HOM05D007301 ORTHO05D002389 7.7e-08 62.8 212 28.3
BraA06t24007Z Brassica rapa HOM05D007301 ORTHO05D002389 1.7e-07 61.6 269 27.1
MSTRG.3030 Avicennia marina HOM05D004339 ORTHO05D002389 2.2e-07 61.2 81 39.5
A06p08080 Brassica napus HOM05D007301 ORTHO05D002389 2.2e-07 61.2 265 27.2
Carub.0001s1106 Capsella rubella HOM05D007301 ORTHO05D002389 2.9e-07 60.8 255 29.4
CARHR011720 Cardamine hirsuta HOM05D007301 ORTHO05D002389 2.9e-07 60.8 229 28.4
Ciclev10011817m.g Citrus clementina HOM05D004339 ORTHO05D002389 2.9e-07 60.8 84 39.3
Nitab4.5_0010283g0040 Nicotiana tabacum HOM05D004339 ORTHO05D002389 2.9e-07 60.8 139 33.1
Rhsim13G0163500 Rhododendron simsii HOM05D007301 ORTHO05D002389 3.8e-07 60.5 156 33.3
SEGI_04222 Sequoiadendron giganteum HOM05D004339 ORTHO05D002389 3.8e-07 60.5 71 42.3
Ca_04851_v3 Cicer arietinum L. HOM05D004339 ORTHO05D002389 5.0e-07 60.1 64 46.9
Potri.017G087200 Populus trichocarpa HOM05D004339 ORTHO05D002389 5.0e-07 60.1 82 37.8
ECA248G1972 Erigeron canadensis HOM05D007301 ORTHO05D002389 6.5e-07 59.7 46 56.5
ATR0068G041 Amborella trichopoda HOM05D004339 ORTHO05D002389 8.5e-07 59.3 98 40.8
Medtr6g012780 Medicago truncatula HOM05D004339 ORTHO05D002389 8.5e-07 59.3 55 49.1
PGR004G0671 Punica granatum HOM05D004339 ORTHO05D002389 8.5e-07 59.3 81 42.0
TPR.G8812 Trifolium pratense HOM05D004339 ORTHO05D002389 8.5e-07 59.3 45 53.3
CAN.G979.4 Capsicum annuum HOM05D004339 ORTHO05D002389 1.1e-06 58.9 63 46.0
Lsat_1_v5_gn_4_170381 Lactuca sativa HOM05D004339 ORTHO05D002389 1.1e-06 58.9 62 48.4
AL1G22530 Arabidopsis lyrata HOM05D007301 ORTHO05D002389 1.5e-06 58.5 242 27.3
AT1G11440 Arabidopsis thaliana HOM05D007301 ORTHO05D002389 1.5e-06 58.5 244 27.5
BcaC06g33669 Brassica carinata HOM05D004339 ORTHO05D002389 1.5e-06 58.5 42 57.1
C07p37990 Brassica napus HOM05D004339 ORTHO05D002389 1.5e-06 58.5 42 57.1
DCAR_011081 Daucus carota HOM05D004339 ORTHO05D002389 1.5e-06 58.5 58 44.8
HanXRQChr08g0232051 Helianthus annuus HOM05D007301 ORTHO05D002389 1.5e-06 58.5 43 58.1
EL10As6g23651 Beta vulgaris HOM05D007301 ORTHO05D002389 1.9e-06 58.2 70 44.3
Manes.01G101300 Manihot esculenta HOM05D004339 ORTHO05D002389 1.9e-06 58.2 113 35.4
Manes.02G048440 Manihot esculenta HOM05D004339 ORTHO05D002389 2.5e-06 57.8 82 41.5
C05p09660 Brassica napus HOM05D007301 ORTHO05D002389 3.2e-06 57.4 263 26.6
BolC5t29707H Brassica oleracea HOM05D007301 ORTHO05D002389 3.2e-06 57.4 263 26.6
ECA232G3508 Erigeron canadensis HOM05D004339 ORTHO05D002389 3.2e-06 57.4 59 49.2
Lsat_1_v5_gn_1_123940 Lactuca sativa HOM05D007301 ORTHO05D002389 3.2e-06 57.4 225 26.2
Manes.02G048520 Manihot esculenta HOM05D004339 ORTHO05D002389 3.2e-06 57.4 82 41.5
Psat1g070960 Pisum sativum HOM05D004339 ORTHO05D002389 3.2e-06 57.4 85 40.0
TPR.G32659 Trifolium pratense HOM05D007301 ORTHO05D002389 3.2e-06 57.4 225 28.4
CANSAT64G0152 Cannabis sativa HOM05D004339 ORTHO05D002389 4.2e-06 57.0 57 49.1
AT3G29075 Arabidopsis thaliana HOM05D004339 ORTHO05D002389 5.5e-06 56.6 42 57.1
Lju41A9G72 Lonicera japonica HOM05D004339 ORTHO05D002389 5.5e-06 56.6 46 50.0
PGSC0003DMG400025147 Solanum tuberosum HOM05D004339 ORTHO05D002389 5.5e-06 56.6 149 33.6
AL5G18970 Arabidopsis lyrata HOM05D004339 ORTHO05D002389 7.2e-06 56.2 42 57.1
Haze_14501 Corylus avellana HOM05D004339 ORTHO05D002389 7.2e-06 56.2 37 62.2
Dinv11507 Davidia involucrata HOM05D004339 ORTHO05D002389 7.2e-06 56.2 53 49.1
Solyc02g088260.3 Solanum lycopersicum HOM05D004339 ORTHO05D002389 7.2e-06 56.2 75 38.7
Sopen02g032940 Solanum pennellii HOM05D004339 ORTHO05D002389 7.2e-06 56.2 75 38.7
PGSC0003DMG400001431 Solanum tuberosum HOM05D004339 ORTHO05D002389 7.2e-06 56.2 75 38.7
EL10Ac3g07125 Beta vulgaris HOM05D004339 ORTHO05D002389 9.4e-06 55.8 40 55.0
BolC7t44320H Brassica oleracea HOM05D004339 ORTHO05D002389 9.4e-06 55.8 42 54.8
CiPaw.03G023900 Carya illinoinensis HOM05D004339 ORTHO05D002389 9.4e-06 55.8 37 62.2
Hma1.2p1_0809F.1_g221835 Hydrangea macrophylla HOM05D007301 ORTHO05D002389 9.4e-06 55.8 222 24.3
Os06g0232000 Oryza sativa ssp. japonica HOM05D004339 ORTHO05D002389 9.4e-06 55.8 80 38.8


User provided reference genes

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