Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G1541 Papaver somniferum HOM05D003796 ORTHO05D004486 1.8e-126 456.1 238 100.0
PSO210G4043 Papaver somniferum HOM05D003796 ORTHO05D004486 2.5e-115 419.1 235 93.6
Nn7g37675 Nelumbo nucifera HOM05D003796 ORTHO05D004486 1.5e-51 207.2 194 55.2
TAR362G0252 Trochodendron aralioides HOM05D003796 ORTHO05D004486 1.5e-51 207.2 234 53.0
Aqoxy2G01069 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 9.0e-49 198.0 188 56.9
MBI08_g25562_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 4.6e-45 185.7 194 53.1
Hma1.2p1_0150F.1_g066730 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 3.0e-44 183.0 228 46.9
Prupe.1G586900 Prunus persica HOM05D003796 ORTHO05D004486 6.7e-44 181.8 180 55.6
MSTRG.22023 Avicennia marina HOM05D003796 ORTHO05D004486 1.6e-42 177.2 209 47.8
MD08G1249800 Malus domestica HOM05D003796 ORTHO05D004486 1.6e-42 177.2 193 50.8
Sed0014142 Sechium edule HOM05D003796 ORTHO05D004486 1.1e-41 174.5 154 58.4
CANSAT35G0237 Cannabis sativa HOM05D003796 ORTHO05D004486 1.8e-41 173.7 158 57.6
Duzib268G1213 Durio zibethinus HOM05D003796 ORTHO05D004486 2.4e-41 173.3 225 44.0
Actinidia28983 Actinidia chinensis HOM05D003796 ORTHO05D004486 9.0e-41 171.4 186 51.1
CDE04G0900 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 9.0e-41 171.4 187 50.8
HanXRQChr13g0418501 Helianthus annuus HOM05D003796 ORTHO05D004486 1.2e-40 171.0 193 50.8
MELO3C022427.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.5e-40 170.6 228 43.9
Cpa.g.sc9.357 Carica papaya HOM05D003796 ORTHO05D004486 3.4e-40 169.5 162 54.9
CiPaw.01G171300 Carya illinoinensis HOM05D003796 ORTHO05D004486 3.4e-40 169.5 226 46.0
Ciclev10021832m.g Citrus clementina HOM05D003796 ORTHO05D004486 3.4e-40 169.5 150 57.3
Potri.013G125600 Populus trichocarpa HOM05D003796 ORTHO05D004486 3.4e-40 169.5 220 45.5
ATR0075G004 Amborella trichopoda HOM05D003796 ORTHO05D004486 4.5e-40 169.1 165 52.7
RcHm_v2.0_Chr4g0406061 Rosa chinensis HOM05D003796 ORTHO05D004486 5.9e-40 168.7 227 45.4
CsaV3_6G007010 Cucumis sativus L. HOM05D003796 ORTHO05D004486 7.7e-40 168.3 161 54.7
Migut.N03072 Erythranthe guttata HOM05D003796 ORTHO05D004486 1.0e-39 167.9 154 57.8
PGSC0003DMG401007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 2.9e-39 166.4 157 53.5
Dinv33197 Davidia involucrata HOM05D003796 ORTHO05D004486 5.0e-39 165.6 235 44.7
CAN.G1432.20 Capsicum annuum HOM05D003796 ORTHO05D004486 6.5e-39 165.2 157 52.9
Lsat_1_v5_gn_3_110880 Lactuca sativa HOM05D003796 ORTHO05D004486 6.5e-39 165.2 161 52.8
ECA240G0037 Erigeron canadensis HOM05D003796 ORTHO05D004486 1.1e-38 164.5 162 53.1
Gohir.D05G328000 Gossypium hirsutum HOM05D003796 ORTHO05D004486 1.9e-38 163.7 223 44.4
Gohir.A05G327600 Gossypium hirsutum HOM05D003796 ORTHO05D004486 5.5e-38 162.2 223 43.5
Sopen06g031300 Solanum pennellii HOM05D003796 ORTHO05D004486 7.2e-38 161.8 157 52.2
PGR042G0542 Punica granatum HOM05D003796 ORTHO05D004486 1.2e-37 161.0 162 48.1
QL10p054554 Quercus lobata HOM05D003796 ORTHO05D004486 1.2e-37 161.0 225 44.0
Solyc06g074890.1 Solanum lycopersicum HOM05D003796 ORTHO05D004486 1.2e-37 161.0 197 45.2
Glyma.12G048900 Glycine max HOM05D003796 ORTHO05D004486 1.6e-37 160.6 153 54.2
Atru.chr4.1395 Acer truncatum HOM05D003796 ORTHO05D004486 2.7e-37 159.8 161 55.3
GSVIVG01038135001 Vitis vinifera HOM05D003796 ORTHO05D004486 2.7e-37 159.8 236 41.5
TWI63G0811 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 4.6e-37 159.1 170 48.2
Gorai.009G351700 Gossypium raimondii HOM05D003796 ORTHO05D004486 7.9e-37 158.3 224 44.2
Manes.11G130100 Manihot esculenta HOM05D003796 ORTHO05D004486 3.0e-36 156.4 179 48.0
Medtr4g068280 Medicago truncatula HOM05D003796 ORTHO05D004486 3.0e-36 156.4 168 51.2
Lj3g0002298 Lotus japonicus HOM05D003796 ORTHO05D004486 8.8e-36 154.8 157 52.9
VMungo1127G1870 Vigna mungo HOM05D003796 ORTHO05D004486 2.0e-35 153.7 149 51.0
Os01g0894700 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 1.7e-34 150.6 174 51.1
Lalb_Chr19g0138481 Lupinus albus HOM05D003796 ORTHO05D004486 4.8e-34 149.1 157 49.7
Zm00001eb144880 Zea mays HOM05D003796 ORTHO05D004486 6.3e-34 148.7 232 41.4
Phvul.011G051000 Phaseolus vulgaris HOM05D003796 ORTHO05D004486 2.4e-33 146.7 151 47.7
arahy.Tifrunner.gnm1.ann1.P7R60W Arachis hypogaea HOM05D003796 ORTHO05D004486 5.3e-33 145.6 197 44.7
Sopen06g031310 Solanum pennellii HOM05D003796 ORTHO05D004486 1.4e-30 137.5 157 47.8
SGA_v2.0_scaffold25G10998 Striga asiatica HOM05D003796 ORTHO05D004486 2.5e-30 136.7 209 39.7
TPR.G10226 Trifolium pratense HOM05D003796 ORTHO05D004486 2.5e-30 136.7 147 48.3
Solyc06g074900.3 Solanum lycopersicum HOM05D003796 ORTHO05D004486 3.2e-30 136.3 157 47.8
Ca_20812_v3 Cicer arietinum L. HOM05D003796 ORTHO05D004486 4.2e-30 136.0 157 51.0
PGSC0003DMG402007138 Solanum tuberosum HOM05D003796 ORTHO05D004486 1.6e-29 134.0 157 45.9
Sc19g0002760 Simmondsia chinensis HOM05D003796 ORTHO05D004486 2.1e-29 133.7 128 50.8
arahy.Tifrunner.gnm1.ann1.I4880T Arachis hypogaea HOM05D003796 ORTHO05D004486 4.7e-29 132.5 213 40.4
Nitab4.5_0007977g0020 Nicotiana tabacum HOM05D003796 ORTHO05D004486 4.7e-29 132.5 158 48.1
Peaxi162Scf00568g00527 Petunia axillaris HOM05D003796 ORTHO05D004486 1.4e-28 131.0 196 41.3
AagrBONN_evm.TU.Sc2ySwM_117.3751 Anthoceros agrestis HOM05D003796 ORTHO05D004486 3.9e-28 129.4 149 45.6
Pp3c14_20300 Physcomitrium patens HOM05D003796 ORTHO05D004486 1.1e-27 127.9 250 36.0
Cc06_g21590 Coffea canephora HOM05D003796 ORTHO05D004486 1.5e-27 127.5 107 56.1
CAN.G1001.53 Capsicum annuum HOM05D003796 ORTHO05D004486 2.6e-27 126.7 231 37.7
EL10Ac3g06067 Beta vulgaris HOM05D003796 ORTHO05D004486 5.7e-27 125.6 227 36.1
SEGI_15351 Sequoiadendron giganteum HOM05D003796 ORTHO05D004486 5.7e-27 125.6 169 39.6
Psat7g207840 Pisum sativum HOM05D003796 ORTHO05D004486 1.7e-26 124.0 117 55.6
FAN12G1593 Fragaria x ananassa HOM05D003796 ORTHO05D004486 3.7e-26 122.9 164 46.3
FvH4_4g10500 Fragaria vesca HOM05D003796 ORTHO05D004486 5.3e-25 119.0 178 42.7
CAN.G1001.52 Capsicum annuum HOM05D003796 ORTHO05D004486 5.9e-24 115.5 100 55.0
CBR_g31497 Chara braunii HOM05D003796 ORTHO05D004486 3.6e-21 106.3 152 38.8
PSO210G6849 Papaver somniferum HOM05D003796 ORTHO05D004486 3.6e-21 106.3 220 30.0
Nn1g09689 Nelumbo nucifera HOM05D003796 ORTHO05D004486 6.1e-21 105.5 149 35.6
AUR62002376 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.0e-20 104.8 123 43.1
AUR62023807 Chenopodium quinoa HOM05D003796 ORTHO05D004486 1.0e-20 104.8 123 43.1
Ah.13g073570 Amaranthus hybridus HOM05D003796 ORTHO05D004486 5.2e-20 102.4 166 41.0
CANSAT80G1979 Cannabis sativa HOM05D003796 ORTHO05D004486 2.6e-19 100.1 211 31.3
Os09g0515400 Oryza sativa ssp. japonica HOM05D003796 ORTHO05D004486 3.3e-19 99.8 156 35.9
Hund03191 Selenicereus undatus HOM05D003796 ORTHO05D004486 4.4e-19 99.4 147 40.1
HPP92_001250 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.4e-19 99.4 129 35.7
HPP92_001266 Vanilla planifolia HOM05D003796 ORTHO05D004486 4.4e-19 99.4 132 34.8
Zm00001eb102770 Zea mays HOM05D003796 ORTHO05D004486 4.4e-19 99.4 112 43.8
CANSAT80G2480 Cannabis sativa HOM05D003796 ORTHO05D004486 5.7e-19 99.0 210 31.4
Manes.11G130200 Manihot esculenta HOM05D003796 ORTHO05D004486 9.7e-19 98.2 162 32.1
PGR042G1269 Punica granatum HOM05D003796 ORTHO05D004486 9.7e-19 98.2 173 32.4
Eucgr.A00010 Eucalyptus grandis HOM05D003796 ORTHO05D004486 1.3e-18 97.8 90 56.7
arahy.Tifrunner.gnm1.ann1.T3U7B8 Arachis hypogaea HOM05D003796 ORTHO05D004486 1.7e-18 97.4 119 37.0
CiPaw.02G100800 Carya illinoinensis HOM05D003796 ORTHO05D004486 2.8e-18 96.7 121 36.4
Medtr3g009150 Medicago truncatula HOM05D003796 ORTHO05D004486 3.7e-18 96.3 144 33.3
TAR362G0647 Trochodendron aralioides HOM05D003796 ORTHO05D004486 6.3e-18 95.5 208 29.3
AT2G30695 Arabidopsis thaliana HOM05D003796 ORTHO05D004486 8.2e-18 95.1 141 33.3
Glyma.04G117800 Glycine max HOM05D003796 ORTHO05D004486 8.2e-18 95.1 124 34.7
CDE09G0312 Ceratophyllum demersum HOM05D003796 ORTHO05D004486 1.1e-17 94.7 187 32.1
VMungo1080G1154 Vigna mungo HOM05D003796 ORTHO05D004486 1.4e-17 94.4 123 36.6
Cpa.g.sc9.356 Carica papaya HOM05D003796 ORTHO05D004486 1.8e-17 94.0 153 33.3
BraA04t17867Z Brassica rapa HOM05D003796 ORTHO05D004486 2.4e-17 93.6 141 31.9
CSS0047221 Camellia sinensis var. sinensis HOM05D003796 ORTHO05D004486 2.4e-17 93.6 127 33.9
Lalb_Chr18g0048811 Lupinus albus HOM05D003796 ORTHO05D004486 3.1e-17 93.2 124 35.5
Eucgr.A00012 Eucalyptus grandis HOM05D003796 ORTHO05D004486 4.1e-17 92.8 161 32.9
MSTRG.24566 Avicennia marina HOM05D003796 ORTHO05D004486 7.0e-17 92.0 159 34.0
Dinv01938 Davidia involucrata HOM05D003796 ORTHO05D004486 9.1e-17 91.7 111 36.0
Dinv02937 Davidia involucrata HOM05D003796 ORTHO05D004486 9.1e-17 91.7 111 36.0
Duzib268G0739 Durio zibethinus HOM05D003796 ORTHO05D004486 9.1e-17 91.7 172 30.8
Prupe.1G206000 Prunus persica HOM05D003796 ORTHO05D004486 9.1e-17 91.7 117 34.2
RcHm_v2.0_Chr5g0044351 Rosa chinensis HOM05D003796 ORTHO05D004486 9.1e-17 91.7 194 30.4
Sabra13G0104300 Salix brachista HOM05D003796 ORTHO05D004486 9.1e-17 91.7 158 29.7
Aqoxy5G00021 Aquilegia oxysepala HOM05D003796 ORTHO05D004486 1.2e-16 91.3 191 29.8
CARHR124190 Cardamine hirsuta HOM05D003796 ORTHO05D004486 1.2e-16 91.3 141 31.9
CsaV3_6G007000 Cucumis sativus L. HOM05D003796 ORTHO05D004486 1.2e-16 91.3 126 33.3
GSVIVG01038134001 Vitis vinifera HOM05D003796 ORTHO05D004486 1.2e-16 91.3 116 33.6
Actinidia28984 Actinidia chinensis HOM05D003796 ORTHO05D004486 1.6e-16 90.9 125 33.6
Lj3g0024133 Lotus japonicus HOM05D005948 ORTHO05D007689 1.6e-16 90.9 120 35.0
Potri.013G125500 Populus trichocarpa HOM05D003796 ORTHO05D004486 1.6e-16 90.9 148 31.1
Sp4g13210 Schrenkiella parvula HOM05D003796 ORTHO05D004486 1.6e-16 90.9 186 29.0
Cc06_g21580 Coffea canephora HOM05D003796 ORTHO05D004486 2.0e-16 90.5 116 37.1
Gohir.A02G091201 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.7e-16 90.1 170 30.0
Gohir.A02G091300 Gossypium hirsutum HOM05D003796 ORTHO05D004486 2.7e-16 90.1 170 30.0
Thecc.04G167900 Theobroma cacao HOM05D003796 ORTHO05D004486 2.7e-16 90.1 121 33.1
ATR0075G045 Amborella trichopoda HOM05D003796 ORTHO05D004486 3.5e-16 89.7 208 29.8
Atru.chr4.1394 Acer truncatum HOM05D003796 ORTHO05D004486 4.5e-16 89.4 202 28.2
Carub.0004s1187 Capsella rubella HOM05D003796 ORTHO05D004486 4.5e-16 89.4 123 31.7
DCAR_005444 Daucus carota HOM05D003796 ORTHO05D004486 4.5e-16 89.4 177 26.6
arahy.Tifrunner.gnm1.ann1.43ZKU2 Arachis hypogaea HOM05D003796 ORTHO05D004486 7.7e-16 88.6 119 35.3
Hma1.2p1_0150F.1_g066720 Hydrangea macrophylla HOM05D003796 ORTHO05D004486 7.7e-16 88.6 160 31.9
Zm00001eb318420 Zea mays HOM05D003796 ORTHO05D004486 1.0e-15 88.2 124 37.1
MD04G1048700 Malus domestica HOM05D003796 ORTHO05D004486 1.3e-15 87.8 189 31.2
Oeu021569.1 Olea europaea HOM05D003796 ORTHO05D004486 1.3e-15 87.8 73 58.9
AL4G25590 Arabidopsis lyrata HOM05D003796 ORTHO05D004486 1.7e-15 87.4 123 30.9
Ciclev10022254m.g Citrus clementina HOM05D003796 ORTHO05D004486 1.7e-15 87.4 149 32.9
MELO3C022428.2 Cucumis melo HOM05D003796 ORTHO05D004486 1.7e-15 87.4 127 33.9
PSO832G2763 Papaver somniferum HOM05D003796 ORTHO05D004486 2.2e-15 87.0 118 33.9
FAN07G1083 Fragaria x ananassa HOM05D003796 ORTHO05D004486 2.9e-15 86.7 86 53.5
TWI63G1493 Tripterygium wilfordii HOM05D003796 ORTHO05D004486 2.9e-15 86.7 116 33.6
Cfa015262 Carpinus fangiana HOM05D003796 ORTHO05D004486 3.8e-15 86.3 172 31.4
QL93p1902_0792 Quercus lobata HOM05D003796 ORTHO05D004486 5.0e-15 85.9 138 39.1
Sabra13G0104400 Salix brachista HOM05D003796 ORTHO05D004486 5.0e-15 85.9 143 38.5
ClCG06G001080 Citrullus lanatus HOM05D003796 ORTHO05D004486 6.5e-15 85.5 156 40.4
arahy.Tifrunner.gnm1.ann1.PV0LGU Arachis hypogaea HOM05D003796 ORTHO05D004486 8.5e-15 85.1 136 30.9
MBI08_g25561_MAGBIO Magnolia biondii HOM05D003796 ORTHO05D004486 8.5e-15 85.1 156 32.7
QL10p054570 Quercus lobata HOM05D003796 ORTHO05D004486 8.5e-15 85.1 94 50.0
FAN22G2021 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-14 84.3 147 39.5
TPR.G16683 Trifolium pratense HOM05D003796 ORTHO05D004486 1.9e-14 84.0 171 29.8
C04p59700 Brassica napus HOM05D003796 ORTHO05D004486 2.5e-14 83.6 144 29.9
BolC4t27478H Brassica oleracea HOM05D003796 ORTHO05D004486 4.2e-14 82.8 152 29.6
Thhalv10017862m.g Eutrema salsugineum HOM05D003796 ORTHO05D004486 5.5e-14 82.4 125 30.4
ClCG06G001070 Citrullus lanatus HOM05D003796 ORTHO05D004486 9.4e-14 81.6 201 26.9
Nitab4.5_0000856g0240 Nicotiana tabacum HOM05D003796 ORTHO05D004486 3.6e-13 79.7 104 45.2
Oeu020812.1 Olea europaea HOM05D003796 ORTHO05D004486 6.1e-13 79.0 95 38.9
A04p23400 Brassica napus HOM05D003796 ORTHO05D004486 1.0e-12 78.2 151 28.5
Peaxi162Scf00568g00059 Petunia axillaris HOM05D003796 ORTHO05D011410 1.0e-12 78.2 123 33.3
THA.LOC104800810 Tarenaya hassleriana HOM05D003796 ORTHO05D004486 1.4e-12 77.8 150 30.7
Rhsim02G0083600 Rhododendron simsii HOM05D003796 ORTHO05D004486 2.3e-12 77.0 190 25.3
Aa31LG5G6120 Aethionema arabicum HOM05D004685 ORTHO05D005412 4.0e-12 76.3 178 26.4
FAN12G2909 Fragaria x ananassa HOM05D003796 ORTHO05D004486 6.8e-12 75.5 148 41.2
FAN25G0936 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.5e-11 74.3 183 26.8
QL10p054574 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-11 73.9 63 60.3
QL93p1902_0789 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-11 73.9 63 60.3
FAN21G0866 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.7e-10 70.9 171 31.0
Gorai.005G124300 Gossypium raimondii HOM05D003796 ORTHO05D004486 2.2e-10 70.5 175 26.3
QL10p054541 Quercus lobata HOM05D003796 ORTHO05D004486 3.7e-10 69.7 133 27.8
Nitab4.5_0000504g0010 Nicotiana tabacum HOM05D003796 ORTHO05D004486 6.3e-10 68.9 111 31.5
FAN11G2235 Fragaria x ananassa HOM05D003796 ORTHO05D004486 1.8e-09 67.4 213 25.8
QL10p053319 Quercus lobata HOM05D003796 ORTHO05D004486 2.0e-08 63.9 178 23.0


User provided reference genes

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