Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G0910 Papaver somniferum HOM05D007919 ORTHO05D006738 2.1e-140 502.3 243 100.0
PSO782G4810 Papaver somniferum HOM05D007919 ORTHO05D006738 2.9e-33 146.4 163 38.7
PSO339G2402 Papaver somniferum HOM05D007919 ORTHO05D006738 2.8e-28 129.8 174 34.5
PSO339G5920 Papaver somniferum HOM05D007919 ORTHO05D006738 6.3e-28 128.6 175 36.6
PSO478G0556 Papaver somniferum HOM05D007919 ORTHO05D006738 3.5e-26 122.9 228 31.6
PSO675G2167 Papaver somniferum HOM05D007919 ORTHO05D006738 1.0e-25 121.3 178 33.1
PSO675G9137 Papaver somniferum HOM05D007919 ORTHO05D006738 1.7e-25 120.6 172 35.5
PSO298G0001 Papaver somniferum HOM05D007919 ORTHO05D006738 2.9e-25 119.8 175 35.4
PSO675G8611 Papaver somniferum HOM05D007919 ORTHO05D006738 6.6e-25 118.6 175 34.3
PSO170G5626 Papaver somniferum HOM05D007919 ORTHO05D006738 1.1e-24 117.9 179 32.4
PSO478G1611 Papaver somniferum HOM05D007919 ORTHO05D006738 3.3e-24 116.3 181 32.6
PSO528G0012 Papaver somniferum HOM05D000003 ORTHO05D006738 4.7e-23 112.5 179 32.4
PSO017G0119 Papaver somniferum HOM05D000003 ORTHO05D006738 8.0e-23 111.7 178 33.7
PSO223G0058 Papaver somniferum HOM05D000003 ORTHO05D000004 1.0e-22 111.3 233 29.2
PSO017G1601 Papaver somniferum HOM05D007919 ORTHO05D006738 1.8e-22 110.5 177 32.8
PSO478G1708 Papaver somniferum HOM05D000003 ORTHO05D006738 3.0e-22 109.8 211 31.8
PSO384G0598 Papaver somniferum HOM05D008740 ORTHO05D006738 4.0e-22 109.4 181 32.0
PSO461G0002 Papaver somniferum HOM05D007919 ORTHO05D006738 8.9e-22 108.2 174 35.1
PSO339G4796 Papaver somniferum HOM05D007919 ORTHO05D006738 5.7e-21 105.5 173 31.2
PSO478G4870 Papaver somniferum HOM05D000003 ORTHO05D006738 1.7e-20 104.0 197 29.4
PSO210G7233 Papaver somniferum HOM05D007919 ORTHO05D006738 8.3e-20 101.7 177 31.6
PSO063G5400 Papaver somniferum HOM05D000003 ORTHO05D000004 1.8e-19 100.5 177 29.4
PSO384G0027 Papaver somniferum HOM05D007919 ORTHO05D006738 1.8e-19 100.5 166 34.3
PSO339G0361 Papaver somniferum HOM05D007919 ORTHO05D006738 1.0e-17 94.7 129 35.7
PSO384G1061 Papaver somniferum HOM05D007919 ORTHO05D006738 6.6e-17 92.0 175 34.3
TAR536G0009 Trochodendron aralioides HOM05D000003 ORTHO05D000004 4.3e-16 89.4 180 28.3
PSO017G1214 Papaver somniferum HOM05D000003 ORTHO05D000004 7.3e-16 88.6 176 30.7
PSO017G4275 Papaver somniferum HOM05D008740 ORTHO05D006738 1.4e-14 84.3 113 35.4
PSO210G5373 Papaver somniferum HOM05D007919 ORTHO05D006738 1.2e-13 81.3 138 31.9
Nn1g09365 Nelumbo nucifera HOM05D000003 ORTHO05D000004 7.5e-13 78.6 172 27.9
PSO478G5133 Papaver somniferum HOM05D008740 ORTHO05D006738 7.5e-13 78.6 209 29.2
PSO832G4066 Papaver somniferum HOM05D000003 ORTHO05D000004 7.5e-13 78.6 181 29.3
PSO675G9045 Papaver somniferum HOM05D000003 ORTHO05D000004 9.8e-13 78.2 177 28.8
PSO832G1269 Papaver somniferum HOM05D007919 ORTHO05D006738 9.8e-13 78.2 95 36.8
PSO528G0097 Papaver somniferum HOM05D007919 ORTHO05D006738 1.3e-12 77.8 63 49.2
PSO832G4009 Papaver somniferum HOM05D000003 ORTHO05D001026 1.7e-12 77.4 183 26.8
EL10Ac6g14227 Beta vulgaris HOM05D000003 ORTHO05D000004 2.2e-12 77.0 175 25.7
CANSAT78G1434 Cannabis sativa HOM05D000003 ORTHO05D000004 3.7e-12 76.3 186 26.3
PSO675G5748 Papaver somniferum HOM05D000003 ORTHO05D000004 6.4e-12 75.5 202 27.2
PSO063G3559 Papaver somniferum HOM05D000003 ORTHO05D000004 8.3e-12 75.1 174 25.3
PSO832G3848 Papaver somniferum HOM05D000003 ORTHO05D000004 8.3e-12 75.1 175 29.7
PSO017G6986 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-11 74.7 173 28.3
PSO063G2188 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-11 74.7 145 31.0
CiPaw.14G039600 Carya illinoinensis HOM05D000003 ORTHO05D000004 1.4e-11 74.3 183 27.3
TAR228G0002 Trochodendron aralioides HOM05D000003 ORTHO05D000004 1.4e-11 74.3 232 25.9
PSO339G4317 Papaver somniferum HOM05D007919 ORTHO05D006738 1.9e-11 73.9 113 34.5
Lj1P164T10 Lonicera japonica HOM05D000003 ORTHO05D000004 3.2e-11 73.2 173 24.9
PSO339G5584 Papaver somniferum HOM05D007919 ORTHO05D006738 3.2e-11 73.2 84 39.3
PSO063G5229 Papaver somniferum HOM05D003407 ORTHO05D001026 7.0e-11 72.0 169 27.8
PSO170G5434 Papaver somniferum HOM05D007919 ORTHO05D006738 9.2e-11 71.6 60 48.3
PSO764G0113 Papaver somniferum HOM05D000003 ORTHO05D006738 9.2e-11 71.6 146 26.7
PSO386G0154 Papaver somniferum HOM05D000003 ORTHO05D000004 2.0e-10 70.5 174 25.3
CANSAT01G1968 Cannabis sativa HOM05D000003 ORTHO05D000004 2.7e-10 70.1 164 27.4
PSO081G0047 Papaver somniferum HOM05D000003 ORTHO05D001026 6.0e-10 68.9 132 29.5
PSO210G0917 Papaver somniferum HOM05D000003 ORTHO05D001026 6.0e-10 68.9 182 25.8
PSO675G3947 Papaver somniferum HOM05D000003 ORTHO05D000004 7.8e-10 68.6 156 24.4
BolC1t02319H Brassica oleracea HOM05D000003 ORTHO05D000004 1.0e-09 68.2 176 26.1
PSO170G5143 Papaver somniferum HOM05D003407 ORTHO05D001026 1.0e-09 68.2 166 24.7
FvH4_5g31282 Fragaria vesca HOM05D000003 ORTHO05D000004 1.3e-09 67.8 180 26.7
EL10Ac1g01950 Beta vulgaris HOM05D000003 ORTHO05D000004 1.7e-09 67.4 162 25.9
BcaB01g02268 Brassica carinata HOM05D000003 ORTHO05D000411 1.7e-09 67.4 202 26.2
CANSAT64G2066 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-09 67.0 169 26.0
PSO357G0348 Papaver somniferum HOM05D003407 ORTHO05D001026 2.3e-09 67.0 126 29.4
PSO675G4292 Papaver somniferum HOM05D000003 ORTHO05D000004 2.3e-09 67.0 169 24.9
PSO675G4995 Papaver somniferum HOM05D007919 ORTHO05D006738 3.0e-09 66.6 96 30.2
TAR133G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.0e-09 66.6 176 26.1
Aa31LG7G12310 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.9e-09 66.2 194 24.7
CANSAT01G3218 Cannabis sativa HOM05D000003 ORTHO05D000004 3.9e-09 66.2 210 25.7
CANSAT80G0829 Cannabis sativa HOM05D000003 ORTHO05D009135 3.9e-09 66.2 166 23.5
PSO832G2737 Papaver somniferum HOM05D007919 ORTHO05D006738 3.9e-09 66.2 94 31.9
PGSC0003DMG400009750 Solanum tuberosum HOM05D000003 ORTHO05D000004 3.9e-09 66.2 170 23.5
CANSAT21G2476 Cannabis sativa HOM05D000003 ORTHO05D000004 5.0e-09 65.9 175 24.6
PSO566G0306 Papaver somniferum HOM05D007919 ORTHO05D006738 5.0e-09 65.9 140 25.7
Aa31LG11G5960 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.6e-09 65.5 173 23.7
BcaC06g35689 Brassica carinata HOM05D000003 ORTHO05D000004 6.6e-09 65.5 192 22.9
CANSAT21G0879 Cannabis sativa HOM05D000003 ORTHO05D000004 6.6e-09 65.5 182 27.5
PSO675G8709 Papaver somniferum HOM05D000003 ORTHO05D000004 6.6e-09 65.5 177 24.9
CANSAT25G2465 Cannabis sativa HOM05D000003 ORTHO05D000167 8.6e-09 65.1 183 29.5
CANSAT64G2879 Cannabis sativa HOM05D000003 ORTHO05D000004 8.6e-09 65.1 172 25.0
PSO447G0003 Papaver somniferum HOM05D000003 ORTHO05D001026 8.6e-09 65.1 143 30.1
CANSAT35G1614 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 64.7 174 27.0
CANSAT54G2929 Cannabis sativa HOM05D000003 ORTHO05D000004 1.1e-08 64.7 167 26.3
CANSAT64G2141 Cannabis sativa HOM05D000003 ORTHO05D000004 1.5e-08 64.3 185 25.9
Atru.ctg24.6 Acer truncatum HOM05D000003 ORTHO05D000004 1.9e-08 63.9 176 26.7
PSO384G0532 Papaver somniferum HOM05D000003 ORTHO05D001026 2.5e-08 63.5 185 25.9
BolC7t42817H Brassica oleracea HOM05D000003 ORTHO05D000004 3.3e-08 63.2 174 25.3
Nn2g10937 Nelumbo nucifera HOM05D000003 ORTHO05D000004 3.3e-08 63.2 101 27.7
TAR121G0003 Trochodendron aralioides HOM05D000003 ORTHO05D000004 3.3e-08 63.2 178 23.6
BraA07t27837Z Brassica rapa HOM05D000003 ORTHO05D000004 4.3e-08 62.8 173 27.7
CANSAT11G0243 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-08 62.8 170 27.1
CANSAT35G1274 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-08 62.8 172 26.2
CANSAT64G0588 Cannabis sativa HOM05D000003 ORTHO05D000004 4.3e-08 62.8 182 26.4
CANSAT80G2177 Cannabis sativa HOM05D000003 ORTHO05D009135 4.3e-08 62.8 166 24.7
Lj4C747T2 Lonicera japonica HOM05D000003 ORTHO05D000004 5.6e-08 62.4 184 22.8
MBI11_g05091_MAGBIO Magnolia biondii HOM05D000155 ORTHO05D000022 5.6e-08 62.4 209 26.3
BcaB01g06093 Brassica carinata HOM05D000003 ORTHO05D001498 7.3e-08 62.0 181 21.5
PSO339G5645 Papaver somniferum HOM05D000003 ORTHO05D000004 7.3e-08 62.0 189 23.3
Aa31sc61G30 Aethionema arabicum HOM05D000003 ORTHO05D000004 9.5e-08 61.6 175 27.4
PSO832G2095 Papaver somniferum HOM05D007919 ORTHO05D006738 9.5e-08 61.6 227 23.8
PSO210G0109 Papaver somniferum HOM05D000003 ORTHO05D001026 1.2e-07 61.2 170 28.2
PSO384G3052 Papaver somniferum HOM05D000003 ORTHO05D000004 1.2e-07 61.2 104 31.7
Aa31LG10G11530 Aethionema arabicum HOM05D000003 ORTHO05D000004 1.6e-07 60.8 166 23.5
CANSAT21G1036 Cannabis sativa HOM05D000003 ORTHO05D000004 1.6e-07 60.8 181 26.5
PSO832G2982 Papaver somniferum HOM05D000003 ORTHO05D000004 1.6e-07 60.8 139 28.1
Aa31LG7G3480 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 220 23.6
CANSAT64G0950 Cannabis sativa HOM05D000003 ORTHO05D000167 2.1e-07 60.5 169 26.6
PSO675G4602 Papaver somniferum HOM05D000003 ORTHO05D000004 2.1e-07 60.5 219 23.3
RcHm_v2.0_Chr1g0344541 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.5 180 25.0
RcHm_v2.0_Chr1g0351011 Rosa chinensis HOM05D000003 ORTHO05D000004 2.1e-07 60.5 197 26.4
Atru.chr3.3019 Acer truncatum HOM05D000003 ORTHO05D000022 2.8e-07 60.1 180 26.1
Aa31LG2G19430 Aethionema arabicum HOM05D000003 ORTHO05D000004 2.8e-07 60.1 176 25.6
BcaB04g16926 Brassica carinata HOM05D000003 ORTHO05D001498 2.8e-07 60.1 154 25.3
Cc08_g06220 Coffea canephora HOM05D000003 ORTHO05D000004 2.8e-07 60.1 197 26.9
RcHm_v2.0_Chr5g0040851 Rosa chinensis HOM05D000003 ORTHO05D000004 2.8e-07 60.1 180 25.0
Aa31LG11G5340 Aethionema arabicum HOM05D000003 ORTHO05D000004 3.6e-07 59.7 172 22.7
BcaC02g09541 Brassica carinata HOM05D000003 ORTHO05D001498 3.6e-07 59.7 154 24.7
CANSAT01G1233 Cannabis sativa HOM05D000003 ORTHO05D000004 3.6e-07 59.7 174 26.4
AUR62018311 Chenopodium quinoa HOM05D000003 ORTHO05D000004 3.6e-07 59.7 164 23.8
RcHm_v2.0_Chr6g0301391 Rosa chinensis HOM05D000003 ORTHO05D000004 3.6e-07 59.7 248 25.4
Aa31LG9G6950 Aethionema arabicum HOM05D000003 ORTHO05D000004 4.7e-07 59.3 184 25.0
CANSAT78G2022 Cannabis sativa HOM05D000003 ORTHO05D000004 4.7e-07 59.3 166 25.3
PSO063G5365 Papaver somniferum HOM05D000003 ORTHO05D000004 4.7e-07 59.3 177 27.1
PSO675G5251 Papaver somniferum HOM05D008740 ORTHO05D006738 4.7e-07 59.3 117 27.4
PSO782G3402 Papaver somniferum HOM05D007919 ORTHO05D006738 4.7e-07 59.3 91 37.4
Aa31LG4G1870 Aethionema arabicum HOM05D000003 ORTHO05D000004 6.2e-07 58.9 175 25.1
BcaB03g16821 Brassica carinata HOM05D000003 ORTHO05D001498 6.2e-07 58.9 103 29.1
BcaC03g14446 Brassica carinata HOM05D000003 ORTHO05D001498 6.2e-07 58.9 142 25.4
PSO541G1762 Papaver somniferum HOM05D009877 ORTHO05D000004 6.2e-07 58.9 137 27.7
Thecc.07G175400 Theobroma cacao HOM05D000003 ORTHO05D000004 6.2e-07 58.9 226 24.8
Atru.chr4.252 Acer truncatum HOM05D000003 ORTHO05D000004 8.0e-07 58.5 171 28.1
CANSAT25G1387 Cannabis sativa HOM05D000003 ORTHO05D000004 8.0e-07 58.5 131 32.8
PSO541G2898 Papaver somniferum HOM05D000003 ORTHO05D000006 8.0e-07 58.5 142 23.2
PSO782G5637 Papaver somniferum HOM05D009877 ORTHO05D000004 8.0e-07 58.5 136 27.9
BolC3t16094H Brassica oleracea HOM05D000003 ORTHO05D016458 1.1e-06 58.2 141 26.2
BraA06t23603Z Brassica rapa HOM05D000003 ORTHO05D000004 1.1e-06 58.2 102 32.4
PSO541G1771 Papaver somniferum HOM05D000003 ORTHO05D000004 1.1e-06 58.2 168 22.6
QL04p039404 Quercus lobata HOM05D000003 ORTHO05D000004 1.1e-06 58.2 121 29.8
BraA02t07795Z Brassica rapa HOM05D000003 ORTHO05D000004 1.4e-06 57.8 102 32.4
PSO425G0063 Papaver somniferum HOM05D000003 ORTHO05D001026 1.4e-06 57.8 172 23.3
CANSAT25G3689 Cannabis sativa HOM05D000003 ORTHO05D000167 1.8e-06 57.4 168 29.8
PSO478G1957 Papaver somniferum HOM05D009877 ORTHO05D000004 1.8e-06 57.4 173 24.3
Atru.chr9.813 Acer truncatum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 171 28.1
CANSAT80G0006 Cannabis sativa HOM05D000003 ORTHO05D000004 2.3e-06 57.0 179 26.8
PSO339G4219 Papaver somniferum HOM05D000003 ORTHO05D000004 2.3e-06 57.0 138 26.8
Sp7g02710 Schrenkiella parvula HOM05D000003 ORTHO05D000925 2.3e-06 57.0 173 25.4
CANSAT35G1823 Cannabis sativa HOM05D000003 ORTHO05D000004 3.1e-06 56.6 181 23.8
CANSAT21G2477 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-06 56.2 222 23.4
CANSAT64G1009 Cannabis sativa HOM05D000003 ORTHO05D000004 4.0e-06 56.2 171 24.6
PSO210G4236 Papaver somniferum HOM05D009877 ORTHO05D000004 4.0e-06 56.2 125 26.4
PSO339G3891 Papaver somniferum HOM05D009877 ORTHO05D000004 4.0e-06 56.2 154 27.9
SGA_v2.0_scaffold279G46783 Striga asiatica HOM05D005209 ORTHO05D006188 4.0e-06 56.2 133 29.3
CANSAT64G0247 Cannabis sativa HOM05D000003 ORTHO05D000004 5.2e-06 55.8 140 29.3
PSO238G0046 Papaver somniferum HOM05D003407 ORTHO05D001026 5.2e-06 55.8 63 34.9
PSO675G5680 Papaver somniferum HOM05D009877 ORTHO05D000004 5.2e-06 55.8 130 27.7
PSO339G0118 Papaver somniferum HOM05D003407 ORTHO05D001026 6.8e-06 55.5 96 30.2
SGA_v2.0_scaffold5G02882 Striga asiatica HOM05D001043 ORTHO05D001555 6.8e-06 55.5 103 30.1
Atru.chr2.2201 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-06 55.1 171 27.5
Atru.chr7.591 Acer truncatum HOM05D000003 ORTHO05D000004 8.9e-06 55.1 178 27.0
Aa31sc214G50 Aethionema arabicum HOM05D000003 ORTHO05D000004 8.9e-06 55.1 259 23.6
CANSAT54G2762 Cannabis sativa HOM05D000003 ORTHO05D000004 8.9e-06 55.1 140 30.0


User provided reference genes

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