Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO832G0806 Papaver somniferum HOM05D004701 ORTHO05D005220 0.0e+00 1347.8 701 100.0
PSO063G2323 Papaver somniferum HOM05D004701 ORTHO05D005220 0.0e+00 1178.7 701 88.7
TAR629G3124 Trochodendron aralioides HOM05D004701 ORTHO05D005220 1.0e-264 916.8 697 65.6
Aqoxy3G03462 Aquilegia oxysepala HOM05D004701 ORTHO05D005220 1.1e-261 906.7 700 67.9
Nn4g23237 Nelumbo nucifera HOM05D004701 ORTHO05D005220 8.8e-256 887.1 639 68.1
GSVIVG01007980001 Vitis vinifera HOM05D004701 ORTHO05D005220 2.7e-249 865.5 700 61.7
CiPaw.12G011900 Carya illinoinensis HOM05D004701 ORTHO05D005220 3.1e-237 825.5 703 59.0
Cfa018922 Carpinus fangiana HOM05D004701 ORTHO05D005220 7.0e-237 824.3 703 59.5
Dinv38737 Davidia involucrata HOM05D004701 ORTHO05D005220 1.6e-236 823.2 636 63.8
Prupe.5G196200 Prunus persica HOM05D004701 ORTHO05D005220 3.2e-234 815.5 702 60.0
Ciclev10019092m.g Citrus clementina HOM05D004701 ORTHO05D005220 4.2e-234 815.1 709 58.5
QL10p017494 Quercus lobata HOM05D004701 ORTHO05D005220 9.4e-234 813.9 705 60.3
Atru.chr9.198 Acer truncatum HOM05D004701 ORTHO05D005220 1.6e-233 813.1 701 57.5
Manes.14G080700 Manihot esculenta HOM05D004701 ORTHO05D005220 1.8e-232 809.7 700 57.3
MD06G1196700 Malus domestica HOM05D004701 ORTHO05D005220 2.6e-231 805.8 703 57.9
Thecc.03G092900 Theobroma cacao HOM05D004701 ORTHO05D005220 4.2e-226 788.5 693 57.7
Potri.017G112200 Populus trichocarpa HOM05D004701 ORTHO05D005220 8.0e-225 784.3 700 55.9
Eucgr.B00530 Eucalyptus grandis HOM05D004701 ORTHO05D005220 2.0e-223 779.6 708 58.5
CANSAT80G1745 Cannabis sativa HOM05D004701 ORTHO05D005220 3.4e-223 778.9 700 58.0
TWI81G0545 Tripterygium wilfordii HOM05D004701 ORTHO05D005220 4.4e-223 778.5 702 56.3
Sabra17G0093000 Salix brachista HOM05D004701 ORTHO05D005220 1.4e-221 773.5 704 55.8
ATR0564G073 Amborella trichopoda HOM05D004701 ORTHO05D005220 4.1e-221 771.9 702 56.8
Duzib205G0738 Durio zibethinus HOM05D004701 ORTHO05D005220 1.5e-218 763.5 691 55.4
FvH4_5g14650 Fragaria vesca HOM05D004701 ORTHO05D005220 1.9e-218 763.1 696 55.5
Gorai.003G098100 Gossypium raimondii HOM05D004701 ORTHO05D005220 1.2e-217 760.4 705 54.0
Duzib068G0813 Durio zibethinus HOM05D004701 ORTHO05D005220 3.6e-217 758.8 691 56.6
Gohir.D03G094000 Gossypium hirsutum HOM05D004701 ORTHO05D005220 3.6e-217 758.8 697 54.4
PGR083G0417 Punica granatum HOM05D004701 ORTHO05D005220 1.4e-216 756.9 703 57.2
CSS0010493 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 6.8e-216 754.6 697 56.1
Lsat_1_v5_gn_5_21460 Lactuca sativa HOM05D004701 ORTHO05D005220 8.9e-216 754.2 697 54.2
Rhsim08G0152800 Rhododendron simsii HOM05D004701 ORTHO05D005220 8.9e-216 754.2 684 56.9
Gohir.A03G067500 Gossypium hirsutum HOM05D004701 ORTHO05D005220 2.9e-214 749.2 640 57.5
RcHm_v2.0_Chr7g0181841 Rosa chinensis HOM05D004701 ORTHO05D005220 3.2e-213 745.7 696 54.6
Sed0001989 Sechium edule HOM05D004701 ORTHO05D005220 2.0e-212 743.0 690 56.5
ECA246G0122 Erigeron canadensis HOM05D004701 ORTHO05D005220 7.8e-212 741.1 700 52.3
FAN18G0140 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.1e-210 737.3 696 54.2
HanXRQChr05g0154901 Helianthus annuus HOM05D004701 ORTHO05D005220 1.5e-210 736.9 695 52.7
CSS0005828 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.5e-210 734.2 710 54.6
THA.LOC104808258 Tarenaya hassleriana HOM05D004701 ORTHO05D005220 9.5e-210 734.2 702 57.0
Lj1g0024661 Lotus japonicus HOM05D004701 ORTHO05D005220 4.0e-208 728.8 700 53.9
FAN08G0610 Fragaria x ananassa HOM05D004701 ORTHO05D005220 2.0e-207 726.5 744 51.3
Medtr3g435140 Medicago truncatula HOM05D004701 ORTHO05D005220 9.8e-207 724.2 696 52.6
Solyc03g115840.4 Solanum lycopersicum HOM05D004701 ORTHO05D005220 1.7e-206 723.4 709 53.9
Glyma.06G195700 Glycine max HOM05D004701 ORTHO05D005220 3.7e-206 722.2 700 52.9
Sc12g0006470 Simmondsia chinensis HOM05D004701 ORTHO05D005220 6.4e-206 721.5 697 53.1
Haze_07305 Corylus avellana HOM05D004701 ORTHO05D005220 1.9e-205 719.9 850 48.4
MELO3C017186.2 Cucumis melo HOM05D004701 ORTHO05D005220 4.1e-205 718.8 706 54.8
BcaB03g14489 Brassica carinata HOM05D004701 ORTHO05D005220 1.6e-204 716.8 704 54.4
CsaV3_1G002500 Cucumis sativus L. HOM05D004701 ORTHO05D005220 1.6e-204 716.8 706 54.0
Sp1g16680 Schrenkiella parvula HOM05D004701 ORTHO05D005220 2.7e-204 716.1 704 52.3
Migut.I00201 Erythranthe guttata HOM05D004701 ORTHO05D005220 4.6e-204 715.3 700 51.4
BcaC07g41307 Brassica carinata HOM05D004701 ORTHO05D005220 6.0e-204 714.9 701 55.1
TPR.G11816 Trifolium pratense HOM05D004701 ORTHO05D005220 1.3e-203 713.8 703 51.8
Carub.0001s1833 Capsella rubella HOM05D004701 ORTHO05D005220 1.7e-203 713.4 708 53.0
C08p43140 Brassica napus HOM05D004701 ORTHO05D005220 5.1e-203 711.8 705 54.9
AL1G31150 Arabidopsis lyrata HOM05D004701 ORTHO05D005220 1.1e-202 710.7 700 54.1
AT1G18700 Arabidopsis thaliana HOM05D004701 ORTHO05D005220 3.3e-202 709.1 698 52.9
vmacro17562 Vaccinium macrocarpon HOM05D004701 ORTHO05D005220 9.5e-202 707.6 733 52.4
Hund02633 Selenicereus undatus HOM05D004701 ORTHO05D005220 3.6e-201 705.7 699 53.1
Aa31LG7G3460 Aethionema arabicum HOM05D004701 ORTHO05D005220 2.6e-199 699.5 761 51.0
VMungo1309G2345 Vigna mungo HOM05D004701 ORTHO05D005220 2.6e-199 699.5 701 52.2
A09p59760 Brassica napus HOM05D004701 ORTHO05D005220 4.4e-199 698.7 727 52.7
Phvul.009G185900 Phaseolus vulgaris HOM05D004701 ORTHO05D005220 2.2e-198 696.4 706 52.5
Nitab4.5_0005900g0110 Nicotiana tabacum HOM05D004701 ORTHO05D005220 3.7e-198 695.7 703 53.2
Peaxi162Scf00274g00452 Petunia axillaris HOM05D004701 ORTHO05D005220 1.9e-197 693.3 706 51.4
SalBow5G2872 Salvia bowleyana HOM05D004701 ORTHO05D005220 3.2e-197 692.6 698 54.0
CAN.G479.72 Capsicum annuum HOM05D004701 ORTHO05D005220 2.7e-196 689.5 713 51.5
Nitab4.5_0001211g0300 Nicotiana tabacum HOM05D004701 ORTHO05D005220 1.7e-195 686.8 705 52.1
Lalb_Chr08g0235571 Lupinus albus HOM05D004701 ORTHO05D005220 3.3e-194 682.6 699 51.1
EL10Ac5g11047 Beta vulgaris HOM05D004701 ORTHO05D005220 4.7e-193 678.7 697 50.6
arahy.Tifrunner.gnm1.ann1.00I77L Arachis hypogaea HOM05D004701 ORTHO05D005220 6.8e-192 674.9 707 51.6
Thhalv10006967m.g Eutrema salsugineum HOM05D004701 ORTHO05D005220 2.9e-190 669.5 657 54.3
FAN13G1597 Fragaria x ananassa HOM05D004701 ORTHO05D005220 1.0e-187 661.0 700 51.7
arahy.Tifrunner.gnm1.ann1.UQ68S4 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.3e-187 660.6 706 52.7
Lj4g0017943 Lotus japonicus HOM05D004701 ORTHO05D005220 4.8e-185 652.1 654 52.4
Psat5g195480 Pisum sativum HOM05D004701 ORTHO05D005220 1.1e-184 651.0 702 49.6
Os07g0632600 Oryza sativa ssp. japonica HOM05D004701 ORTHO05D005220 1.3e-179 634.0 630 49.8
BolC8t51869H Brassica oleracea HOM05D004701 ORTHO05D005220 1.4e-176 624.0 717 50.9
AUR62021651 Chenopodium quinoa HOM05D004701 ORTHO05D005220 4.5e-175 619.0 711 48.9
Cc00_g08370 Coffea canephora HOM05D004701 ORTHO05D005220 1.3e-174 617.5 604 52.3
AUR62008439 Chenopodium quinoa HOM05D004701 ORTHO05D005220 1.1e-170 604.4 743 46.4
BraA09t41353Z Brassica rapa HOM05D004701 ORTHO05D005220 4.3e-170 602.4 752 48.1
Zm00001eb110080 Zea mays HOM05D004701 ORTHO05D005220 5.3e-168 595.5 628 48.7
COL.COLO4_36922 Corchorus olitorius HOM05D004701 ORTHO05D005220 1.3e-161 574.3 656 48.2
CDE02G4120 Ceratophyllum demersum HOM05D004701 ORTHO05D005220 6.7e-155 552.0 466 58.2
Lj5A108G55 Lonicera japonica HOM05D004701 ORTHO05D005220 4.3e-154 549.3 583 52.0
TAR629G0729 Trochodendron aralioides HOM05D004701 ORTHO05D005220 5.7e-154 548.9 442 62.2
HPP92_019783 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.1e-149 534.6 700 42.4
Ah.11g048260 Amaranthus hybridus HOM05D004701 ORTHO05D005220 4.8e-145 519.2 567 48.7
DCAR_010367 Daucus carota HOM05D004701 ORTHO05D005220 4.7e-140 502.7 698 41.1
Actinidia04876 Actinidia chinensis HOM05D004701 ORTHO05D005220 1.5e-133 481.1 375 62.1
Lj2g0020469 Lotus japonicus HOM05D004701 ORTHO05D005220 2.5e-133 480.3 641 42.9
Sopen03g034820 Solanum pennellii HOM05D004701 ORTHO05D005220 3.2e-133 479.9 473 55.2
ClCG06G016050 Citrullus lanatus HOM05D004701 ORTHO05D005220 8.0e-132 475.3 452 54.0
MBI02_g20482_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 8.8e-131 471.9 331 69.5
Mapoly0021s0150 Marchantia polymorpha HOM05D004701 ORTHO05D005220 4.7e-124 449.5 595 41.5
Pp3c17_15290 Physcomitrium patens HOM05D004701 ORTHO05D005220 1.2e-114 418.3 597 41.7
AagrBONN_evm.TU.Sc2ySwM_344.3797 Anthoceros agrestis HOM05D004701 ORTHO05D005220 1.7e-110 404.4 539 40.4
CARHR019320 Cardamine hirsuta HOM05D004701 ORTHO05D005220 2.3e-94 350.9 257 61.9
SMO117G0311 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.0e-86 323.9 352 45.7
MD14G1203500 Malus domestica HOM05D004701 ORTHO05D005220 4.1e-80 303.5 329 49.2
Actinidia04875 Actinidia chinensis HOM05D004701 ORTHO05D005220 7.8e-71 272.7 277 52.0
Cpa.g.sc341.2 Carica papaya HOM05D004701 ORTHO05D005220 4.0e-59 233.8 286 46.5
PGSC0003DMG400019522 Solanum tuberosum HOM05D004701 ORTHO05D005220 1.2e-58 232.3 292 49.3
Oeu052445.1 Olea europaea HOM05D004701 ORTHO05D005220 4.5e-58 230.3 264 45.8
Sopen03g034830 Solanum pennellii HOM05D004701 ORTHO05D005220 6.4e-57 226.5 216 50.0
HPP92_019730 Vanilla planifolia HOM05D004701 ORTHO05D005220 1.0e-54 219.2 527 30.9
SMO286G0020 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 5.1e-54 216.9 351 35.9
Ca_14652_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 4.3e-53 213.8 252 44.8
MD14G1203400 Malus domestica HOM05D004701 ORTHO05D005220 8.1e-52 209.5 182 56.6
CSS0033275 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.9e-48 198.4 215 47.4
SMO274G0026 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 7.2e-40 169.9 344 31.4
SMO274G0023 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-39 167.2 324 33.0
Cc00_g08360 Coffea canephora HOM05D004701 ORTHO05D005220 3.3e-37 161.0 162 50.6
SEGI_05265 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 5.7e-37 160.2 170 51.2
SMO240G0047 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-36 157.9 287 33.1
Hma1.2p1_0060F.1_g033570 Hydrangea macrophylla HOM05D004701 ORTHO05D005220 2.6e-34 151.4 165 47.9
SMO202G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.6e-34 151.4 184 44.6
Ca_14653_v3 Cicer arietinum L. HOM05D004701 ORTHO05D005220 1.6e-31 142.1 237 35.0
SMO364G0054 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.6e-31 140.6 197 37.6
Cpa.g.c36787.2 Carica papaya HOM05D004701 ORTHO05D005220 1.0e-30 139.4 87 70.1
SMO122G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.8e-30 138.7 214 37.4
SMO183G0003 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 8.8e-30 136.3 326 32.5
SMO274G0001 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.4e-26 124.4 157 44.6
SMO274G0004 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.3e-25 122.5 273 31.9
SMO077G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 6.5e-25 120.2 217 32.3
PRCOL_00003726 Prasinoderma coloniale HOM05D004701 ORTHO05D005220 7.2e-24 116.7 434 23.5
SEGI_06018 Sequoiadendron giganteum HOM05D004701 ORTHO05D005220 3.6e-23 114.4 143 43.4
AagrBONN_evm.TU.Sc2ySwM_344.2753 Anthoceros agrestis HOM05D004701 ORTHO05D005220 3.9e-22 110.9 421 27.8
SMO212G0008 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.9e-22 110.9 136 42.6
Lj5A108T60 Lonicera japonica HOM05D004701 ORTHO05D005220 8.8e-22 109.8 139 42.4
Cre02.g118450 Chlamydomonas reinhardtii HOM05D004701 ORTHO05D005220 1.1e-21 109.4 479 23.6
AagrBONN_evm.TU.Sc2ySwM_344.2754 Anthoceros agrestis HOM05D004701 ORTHO05D005220 6.3e-20 103.6 175 33.1
Oeu052446.1 Olea europaea HOM05D004701 ORTHO05D005220 8.2e-20 103.2 155 39.4
SMO077G0009 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 4.1e-19 100.9 240 31.2
CSS0009827 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 7.0e-19 100.1 79 58.2
CSS0002973 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 9.1e-19 99.8 79 57.0
MD14G1203300 Malus domestica HOM05D004701 ORTHO05D005220 9.1e-19 99.8 104 51.9
CSS0048671 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 4.5e-18 97.4 79 55.7
CSS0034852 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 2.9e-17 94.7 79 54.4
MD14G1127800 Malus domestica HOM05D004701 ORTHO05D005220 2.1e-15 88.6 76 51.3
Lsat_1_v5_gn_3_76880 Lactuca sativa HOM05D005083 ORTHO05D006310 8.0e-15 86.7 96 49.0
SMO032G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 1.1e-13 82.8 101 45.5
Oeu052444.1 Olea europaea HOM05D004701 ORTHO05D005220 4.4e-13 80.9 65 60.0
MBI18_g07590_MAGBIO Magnolia biondii HOM05D003771 ORTHO05D015058 5.7e-13 80.5 50 72.0
Haze_06052 Corylus avellana HOM05D022078 ORTHO05D024871 1.3e-12 79.3 57 66.7
Ah.11g048280 Amaranthus hybridus HOM05D004701 ORTHO05D005220 2.2e-12 78.6 84 46.4
SMO286G0021 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 2.8e-12 78.2 174 29.3
SGA_v2.0_scaffold313G48342 Striga asiatica HOM05D004701 ORTHO05D005220 1.8e-11 75.5 138 44.9
Cpa.g.sc3599.1 Carica papaya HOM05D004701 ORTHO05D005220 2.0e-10 72.0 66 59.1
Haze_06050 Corylus avellana HOM05D022078 ORTHO05D024871 3.5e-10 71.2 57 63.2
CSS0011657 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.9e-10 70.5 79 48.1
arahy.Tifrunner.gnm1.ann1.4DD1B6 Arachis hypogaea HOM05D004701 ORTHO05D005220 1.7e-09 68.9 136 50.0
MELO3C028766.2 Cucumis melo HOM05D001162 ORTHO05D022475 1.1e-08 66.2 45 57.8
CSS0033804 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 5.5e-08 63.9 38 63.2
SMO009G0002 Selaginella moellendorffii HOM05D004701 ORTHO05D005220 3.6e-07 61.2 180 31.1
CSS0018594 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 1.0e-06 59.7 41 65.9
MBI05_g10671_MAGBIO Magnolia biondii HOM05D004701 ORTHO05D005220 6.8e-06 57.0 34 70.6
CSS0027371 Camellia sinensis var. sinensis HOM05D004701 ORTHO05D005220 8.8e-06 56.6 44 59.1
SalBow8G0867 Salvia bowleyana HOM05D001329 ORTHO05D004946 8.8e-06 56.6 47 57.4


User provided reference genes

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