Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO824G0013 Papaver somniferum HOM05D003601 ORTHO05D004896 2.1e-100 369.0 185 100.0
PSO541G5643 Papaver somniferum HOM05D003601 ORTHO05D004896 6.9e-67 257.7 236 61.4
PSO675G3308 Papaver somniferum HOM05D003601 ORTHO05D004896 9.3e-64 247.3 236 60.6
TAR374G1433 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.7e-53 211.5 241 52.7
TAR374G1718 Trochodendron aralioides HOM05D003601 ORTHO05D004896 5.7e-53 211.5 241 52.7
Nn2g12387 Nelumbo nucifera HOM05D003601 ORTHO05D004896 1.3e-52 210.3 240 52.5
Lj8C4T0 Lonicera japonica HOM05D003601 ORTHO05D004896 6.3e-52 208.0 247 50.6
Manes.02G115900 Manihot esculenta HOM05D003601 ORTHO05D004896 1.2e-50 203.8 241 49.4
CANSAT11G0274 Cannabis sativa HOM05D003601 ORTHO05D004896 2.6e-50 202.6 241 50.6
Dinv18735 Davidia involucrata HOM05D003601 ORTHO05D004896 2.6e-50 202.6 241 49.0
CSS0034548 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 3.4e-50 202.2 243 49.4
Manes.07G071780 Manihot esculenta HOM05D003601 ORTHO05D004896 4.5e-50 201.8 241 49.0
Dinv32573 Davidia involucrata HOM05D003601 ORTHO05D004896 5.9e-50 201.4 241 48.5
GSVIVG01027082001 Vitis vinifera HOM05D003601 ORTHO05D004896 5.9e-50 201.4 230 50.0
Rhsim07G0005200 Rhododendron simsii HOM05D003601 ORTHO05D004896 1.7e-49 199.9 242 48.3
Haze_15640 Corylus avellana HOM05D003601 ORTHO05D004896 2.2e-49 199.5 241 47.7
Cc05_g04050 Coffea canephora HOM05D003601 ORTHO05D004896 1.9e-48 196.4 241 49.8
QL01p016478 Quercus lobata HOM05D003601 ORTHO05D004896 1.9e-48 196.4 241 47.3
vmacro23173 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 2.5e-48 196.1 242 48.3
ClCG08G004950 Citrullus lanatus HOM05D003601 ORTHO05D004896 4.2e-48 195.3 241 46.1
TWI59G1066 Tripterygium wilfordii HOM05D003601 ORTHO05D004896 4.2e-48 195.3 243 48.1
MELO3C010640.2 Cucumis melo HOM05D003601 ORTHO05D004896 7.2e-48 194.5 237 46.8
Atru.chr5.650 Acer truncatum HOM05D003601 ORTHO05D004896 1.6e-47 193.4 241 47.3
Duzib151G0301 Durio zibethinus HOM05D003601 ORTHO05D004896 1.6e-47 193.4 238 45.8
Ciclev10021165m.g Citrus clementina HOM05D003601 ORTHO05D004896 3.6e-47 192.2 229 48.9
CsaV3_6G034170 Cucumis sativus L. HOM05D003601 ORTHO05D004896 3.6e-47 192.2 237 46.4
Ah.01g018710 Amaranthus hybridus HOM05D003601 ORTHO05D004896 7.9e-47 191.0 238 46.2
AL1G11100 Arabidopsis lyrata HOM05D003601 ORTHO05D004896 1.0e-46 190.7 238 46.2
Potri.014G097300 Populus trichocarpa HOM05D003601 ORTHO05D004896 1.0e-46 190.7 238 49.2
QL05p061139 Quercus lobata HOM05D003601 ORTHO05D004896 1.0e-46 190.7 241 46.1
CiPaw.01G074700 Carya illinoinensis HOM05D003601 ORTHO05D004896 1.3e-46 190.3 243 47.3
ECA236G1416 Erigeron canadensis HOM05D003601 ORTHO05D004896 1.3e-46 190.3 237 48.1
Eucgr.D01238 Eucalyptus grandis HOM05D003601 ORTHO05D004896 2.3e-46 189.5 233 46.4
Carub.0001s0088 Capsella rubella HOM05D003601 ORTHO05D004896 3.0e-46 189.1 238 45.8
Lj8C0T4 Lonicera japonica HOM05D003601 ORTHO05D004896 3.9e-46 188.7 246 48.4
Thhalv10009432m.g Eutrema salsugineum HOM05D003601 ORTHO05D004896 6.7e-46 188.0 227 48.0
PGSC0003DMG400013655 Solanum tuberosum HOM05D003601 ORTHO05D004896 6.7e-46 188.0 232 49.1
Cpa.g.sc273.4 Carica papaya HOM05D003601 ORTHO05D004896 8.7e-46 187.6 235 48.1
Sabra14G0071300 Salix brachista HOM05D003601 ORTHO05D004896 1.5e-45 186.8 238 48.3
arahy.Tifrunner.gnm1.ann1.JS26LE Arachis hypogaea HOM05D003601 ORTHO05D004896 1.9e-45 186.4 230 45.7
Gohir.A03G095300 Gossypium hirsutum HOM05D003601 ORTHO05D004896 1.9e-45 186.4 239 45.6
Gohir.D02G113600 Gossypium hirsutum HOM05D003601 ORTHO05D004896 2.5e-45 186.0 239 45.6
QL05p063445 Quercus lobata HOM05D003601 ORTHO05D004896 2.5e-45 186.0 241 46.5
Sed0004785 Sechium edule HOM05D003601 ORTHO05D004896 2.5e-45 186.0 243 45.7
BcaB03g13574 Brassica carinata HOM05D003601 ORTHO05D004896 3.3e-45 185.7 235 45.5
Sc23g0002160 Simmondsia chinensis HOM05D003601 ORTHO05D004896 3.3e-45 185.7 239 45.2
ATR1127G077 Amborella trichopoda HOM05D003601 ORTHO05D004896 4.3e-45 185.3 240 47.9
arahy.Tifrunner.gnm1.ann1.EN9PMD Arachis hypogaea HOM05D003601 ORTHO05D004896 4.3e-45 185.3 230 45.7
Peaxi162Scf01343g00152 Petunia axillaris HOM05D003601 ORTHO05D004896 4.3e-45 185.3 242 45.5
QL05p061428 Quercus lobata HOM05D003601 ORTHO05D004896 5.7e-45 184.9 241 44.8
COL.COLO4_20208 Corchorus olitorius HOM05D003601 ORTHO05D004896 7.4e-45 184.5 240 45.0
DCAR_004784 Daucus carota HOM05D003601 ORTHO05D004896 7.4e-45 184.5 240 48.3
THA.LOC104812142 Tarenaya hassleriana HOM05D003601 ORTHO05D004896 7.4e-45 184.5 230 46.5
Thecc.04G197100 Theobroma cacao HOM05D003601 ORTHO05D004896 7.4e-45 184.5 231 45.9
Gorai.005G129300 Gossypium raimondii HOM05D003601 ORTHO05D004896 1.3e-44 183.7 239 45.2
Sp1g00940 Schrenkiella parvula HOM05D003601 ORTHO05D004896 1.3e-44 183.7 235 45.5
unitig_0.g331 Utricularia gibba HOM05D003601 ORTHO05D004896 1.3e-44 183.7 230 45.7
Aa31LG11G12300 Aethionema arabicum HOM05D003601 ORTHO05D004896 1.6e-44 183.3 230 45.7
AT1G01350 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 1.6e-44 183.3 238 45.0
BolC5t28850H Brassica oleracea HOM05D003601 ORTHO05D004896 1.6e-44 183.3 237 44.3
RcHm_v2.0_Chr3g0492261 Rosa chinensis HOM05D003601 ORTHO05D004896 1.6e-44 183.3 241 46.9
BcaB03g13575 Brassica carinata HOM05D003601 ORTHO05D004896 2.2e-44 183.0 238 44.1
FAN02G3979 Fragaria x ananassa HOM05D004408 ORTHO05D005486 2.2e-44 183.0 241 47.3
EL10Ac9g21625 Beta vulgaris HOM05D003601 ORTHO05D004896 2.8e-44 182.6 238 45.4
C05p00620 Brassica napus HOM05D003601 ORTHO05D004896 2.8e-44 182.6 229 45.4
FvH4_6g10411 Fragaria vesca HOM05D003601 ORTHO05D004896 6.3e-44 181.4 241 47.3
SEGI_12555 Sequoiadendron giganteum HOM05D003601 ORTHO05D004896 6.3e-44 181.4 238 45.8
BraA10t42337Z Brassica rapa HOM05D003601 ORTHO05D004896 8.2e-44 181.0 231 45.0
FAN14G0738 Fragaria x ananassa HOM05D003601 ORTHO05D004896 8.2e-44 181.0 241 47.3
Medtr7g109250 Medicago truncatula HOM05D003601 ORTHO05D004896 8.2e-44 181.0 244 44.7
Sopen02g026770 Solanum pennellii HOM05D003601 ORTHO05D004896 8.2e-44 181.0 224 48.7
EL10Ac5g12528 Beta vulgaris HOM05D003601 ORTHO05D004896 1.8e-43 179.9 232 44.8
A10p00590 Brassica napus HOM05D003601 ORTHO05D004896 1.8e-43 179.9 232 46.1
Prupe.6G288300 Prunus persica HOM05D003601 ORTHO05D004896 1.8e-43 179.9 241 45.2
AT5G06420 Arabidopsis thaliana HOM05D003601 ORTHO05D004896 2.4e-43 179.5 231 45.0
FAN05G2697 Fragaria x ananassa HOM05D004408 ORTHO05D005486 3.1e-43 179.1 241 46.5
Glyma.03G025400 Glycine max HOM05D003601 ORTHO05D004896 4.1e-43 178.7 230 45.7
Nitab4.5_0000614g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 4.1e-43 178.7 226 46.5
PGR042G1585 Punica granatum HOM05D003601 ORTHO05D004896 5.3e-43 178.3 228 45.6
CARHR001090 Cardamine hirsuta HOM05D003601 ORTHO05D004896 9.1e-43 177.6 229 45.0
FAN09G0115 Fragaria x ananassa HOM05D004408 ORTHO05D005486 1.2e-42 177.2 239 46.4
MD01G1079100 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-42 176.8 241 44.8
Glyma.05G210600 Glycine max HOM05D003601 ORTHO05D004896 2.6e-42 176.0 230 45.2
Nitab4.5_0001815g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 2.6e-42 176.0 226 46.0
VMungo0331G0886 Vigna mungo HOM05D003601 ORTHO05D004896 2.6e-42 176.0 230 44.8
Lj1g0023495 Lotus japonicus HOM05D003601 ORTHO05D004896 7.7e-42 174.5 232 44.0
Phvul.010G084000 Phaseolus vulgaris HOM05D003601 ORTHO05D004896 1.3e-41 173.7 230 44.8
HPP92_024723 Vanilla planifolia HOM05D003601 ORTHO05D004896 1.7e-41 173.3 244 43.0
Ca_09198_v3 Cicer arietinum L. HOM05D003601 ORTHO05D004896 2.2e-41 172.9 237 43.5
MD04G1169800 Malus domestica HOM05D003601 ORTHO05D004896 2.9e-41 172.6 241 45.2
HanXRQChr04g0120251 Helianthus annuus HOM05D003601 ORTHO05D004896 1.4e-40 170.2 239 43.1
Hund16704 Selenicereus undatus HOM05D003601 ORTHO05D004896 1.4e-40 170.2 226 43.8
Cfa003813 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.2e-40 167.9 241 43.2
TPR.G20293 Trifolium pratense HOM05D003601 ORTHO05D004896 1.6e-39 166.8 238 43.3
MSTRG.17333 Avicennia marina HOM05D003601 ORTHO05D004896 2.1e-39 166.4 218 45.4
Lalb_Chr04g0261591 Lupinus albus HOM05D003601 ORTHO05D004896 2.1e-39 166.4 246 41.9
HanXRQChr06g0170651 Helianthus annuus HOM05D003601 ORTHO05D004896 6.1e-39 164.9 238 43.7
Peaxi162Scf00036g00412 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-39 164.9 221 44.3
Peaxi162Scf00130g01110 Petunia axillaris HOM05D003601 ORTHO05D004896 6.1e-39 164.9 209 45.0
TPR.G29640 Trifolium pratense HOM05D003601 ORTHO05D004896 6.1e-39 164.9 213 45.5
CAN.G809.19 Capsicum annuum HOM05D003601 ORTHO05D004896 1.4e-38 163.7 213 46.9
AUR62016842 Chenopodium quinoa HOM05D003601 ORTHO05D004896 1.4e-38 163.7 238 41.6
Mapoly0066s0113 Marchantia polymorpha HOM05D003601 ORTHO05D004896 1.4e-38 163.7 237 40.9
SHI13229 Sapria himalayana HOM05D003601 ORTHO05D004896 1.4e-38 163.7 229 44.1
Pp3c8_16180 Physcomitrium patens HOM05D003601 ORTHO05D004896 7.4e-37 157.9 230 42.6
Thecc.07G081100 Theobroma cacao HOM05D003601 ORTHO05D004896 2.2e-36 156.4 202 45.5
Lsat_1_v5_gn_7_1360 Lactuca sativa HOM05D003601 ORTHO05D004896 3.7e-36 155.6 235 40.9
Aqoxy3G00289 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 6.3e-36 154.8 241 41.1
Nitab4.5_0005819g0040 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.3e-36 154.8 242 42.6
Migut.B01852 Erythranthe guttata HOM05D003601 ORTHO05D004896 3.1e-35 152.5 221 40.7
Actinidia10120 Actinidia chinensis HOM05D003601 ORTHO05D004896 5.3e-35 151.8 235 40.9
CSS0019404 Camellia sinensis var. sinensis HOM05D003601 ORTHO05D004896 5.3e-35 151.8 168 49.4
COL.COLO4_33292 Corchorus olitorius HOM05D002650 ORTHO05D002924 5.3e-35 151.8 198 42.9
AagrBONN_evm.TU.Sc2ySwM_344.3813 Anthoceros agrestis HOM05D003601 ORTHO05D004896 6.9e-35 151.4 226 40.7
Duzib212G0966 Durio zibethinus HOM05D003601 ORTHO05D004896 1.5e-34 150.2 238 39.9
MD07G1148000 Malus domestica HOM05D003601 ORTHO05D004896 1.5e-34 150.2 80 81.2
SGA_v2.0_scaffold5G03009 Striga asiatica HOM05D003601 ORTHO05D004896 3.4e-34 149.1 224 42.4
Glyma.08G286000 Glycine max HOM05D003601 ORTHO05D004896 5.9e-34 148.3 214 40.7
Medtr7g108868 Medicago truncatula HOM05D003601 ORTHO05D004896 5.0e-33 145.2 107 65.4
Medtr8g058593 Medicago truncatula HOM05D003601 ORTHO05D004896 5.0e-33 145.2 107 65.4
Nitab4.5_0010133g0020 Nicotiana tabacum HOM05D003601 ORTHO05D004896 6.5e-33 144.8 156 48.7
Peaxi162Scf00119g01222 Petunia axillaris HOM05D003601 ORTHO05D004896 6.5e-33 144.8 81 76.5
LjContig00564g0001173 Lotus japonicus HOM05D003601 ORTHO05D004896 8.5e-33 144.4 230 40.0
CDE08G0937 Ceratophyllum demersum HOM05D003601 ORTHO05D004896 1.1e-32 144.1 195 45.6
Medtr8g058607 Medicago truncatula HOM05D003601 ORTHO05D004896 1.1e-32 144.1 107 65.4
Zm00001eb204190 Zea mays HOM05D003601 ORTHO05D004896 1.1e-32 144.1 81 76.5
Os02g0301000 Oryza sativa ssp. japonica HOM05D003601 ORTHO05D004896 2.5e-32 142.9 236 39.4
Sed0000777 Sechium edule HOM05D003601 ORTHO05D004896 3.2e-32 142.5 81 75.3
vmacro10191 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.2e-32 142.5 220 40.9
vmacro20852 Vaccinium macrocarpon HOM05D003601 ORTHO05D004896 3.2e-32 142.5 220 40.9
AagrBONN_evm.TU.Sc2ySwM_344.929 Anthoceros agrestis HOM05D003601 ORTHO05D004896 9.4e-32 141.0 79 77.2
Hma1.2p1_0180F.1_g079650 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 6.7e-30 134.8 80 71.2
Hma1.2p1_1566F.1_g291000 Hydrangea macrophylla HOM05D003601 ORTHO05D004896 1.1e-29 134.0 79 72.2
Rhsim01G0171500 Rhododendron simsii HOM05D003601 ORTHO05D004896 4.4e-29 132.1 218 40.4
SMO351G0471 Selaginella moellendorffii HOM05D003601 ORTHO05D004896 4.4e-29 132.1 254 33.9
CBR_g49220 Chara braunii HOM05D003601 ORTHO05D004896 7.4e-29 131.3 76 71.1
CARHR001100 Cardamine hirsuta HOM05D003601 ORTHO05D004896 1.7e-28 130.2 80 70.0
TAR375G0212 Trochodendron aralioides HOM05D003601 ORTHO05D004896 2.2e-28 129.8 75 78.7
MCO16G487 Micromonas commoda HOM05D003601 ORTHO05D004896 4.1e-27 125.6 80 65.0
Cre06.g254650 Chlamydomonas reinhardtii HOM05D003601 ORTHO05D004896 1.9e-24 116.7 80 56.2
Eucgr.L01590 Eucalyptus grandis HOM05D003601 ORTHO05D004896 9.4e-24 114.4 192 39.1
DCAR_004777 Daucus carota HOM05D003601 ORTHO05D004896 2.2e-20 103.2 240 37.1
QL05p061570 Quercus lobata HOM05D003601 ORTHO05D004896 3.1e-19 99.4 138 44.9
PRCOL_00000030 Prasinoderma coloniale HOM05D003601 ORTHO05D004896 4.1e-19 99.0 58 65.5
TPR.G8712 Trifolium pratense HOM05D003601 ORTHO05D004896 1.2e-18 97.4 198 36.9
Carub.0008s2038 Capsella rubella HOM05D003601 ORTHO05D004896 3.8e-17 92.4 50 80.0
Haze_27631 Corylus avellana HOM05D003601 ORTHO05D004896 1.5e-16 90.5 52 67.3
SGA_v2.0_scaffold25G10756 Striga asiatica HOM05D003601 ORTHO05D004896 4.2e-16 89.0 188 36.7
Cfa021608 Carpinus fangiana HOM05D003601 ORTHO05D004896 7.2e-16 88.2 88 46.6
Sc08g0001910 Simmondsia chinensis HOM05D003601 ORTHO05D004896 9.4e-16 87.8 65 58.5
ECA247G1228 Erigeron canadensis HOM05D003601 ORTHO05D004896 6.1e-15 85.1 122 41.0
Duzib212G0206 Durio zibethinus HOM05D003601 ORTHO05D004896 1.8e-14 83.6 170 37.1
Prupe.7G095500 Prunus persica HOM05D003601 ORTHO05D004896 1.8e-14 83.6 155 33.5
BraA09t42245Z Brassica rapa HOM05D000288 ORTHO05D000173 1.5e-13 80.5 43 74.4
QL04p075806 Quercus lobata HOM05D003601 ORTHO05D004896 3.7e-12 75.9 104 46.2
RcHm_v2.0_Chr3g0461311 Rosa chinensis HOM05D003601 ORTHO05D004896 8.3e-12 74.7 104 42.3
Psat3g020760 Pisum sativum HOM05D003601 ORTHO05D004896 4.5e-10 68.9 94 45.7
Aqoxy5G01484 Aquilegia oxysepala HOM05D003601 ORTHO05D004896 2.9e-09 66.2 152 33.6
TPR.G13782 Trifolium pratense HOM05D003601 ORTHO05D037558 9.5e-08 61.2 105 41.9
Actinidia26616 Actinidia chinensis HOM05D003601 ORTHO05D004896 2.8e-07 59.7 101 41.6
TAR375G0774 Trochodendron aralioides HOM05D003601 ORTHO05D004896 3.6e-07 59.3 74 55.4
QL04p075812 Quercus lobata HOM05D003601 ORTHO05D004896 4.7e-07 58.9 30 80.0
TPR.G20298 Trifolium pratense HOM05D003601 ORTHO05D037558 1.0e-06 57.8 91 44.0


User provided reference genes

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