Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0820 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1987.2 1013 100.0
PSO339G1342 Papaver somniferum HOM05D004746 ORTHO05D005863 0.0e+00 1963.0 1013 98.7
Nn2g10907 Nelumbo nucifera HOM05D004746 ORTHO05D005863 0.0e+00 1600.9 1014 78.9
Aqoxy7G03079 Aquilegia oxysepala HOM05D004746 ORTHO05D005863 0.0e+00 1563.1 1010 75.8
Atru.chr8.2277 Acer truncatum HOM05D004746 ORTHO05D005863 0.0e+00 1559.3 1010 76.5
Manes.09G106500 Manihot esculenta HOM05D004746 ORTHO05D005863 0.0e+00 1554.7 1010 76.7
Thecc.05G012200 Theobroma cacao HOM05D004746 ORTHO05D005863 0.0e+00 1548.5 1010 75.1
Ciclev10010971m.g Citrus clementina HOM05D004746 ORTHO05D005863 0.0e+00 1542.3 1013 75.8
CSS0006394 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1535.0 1009 76.4
CSS0013285 Camellia sinensis var. sinensis HOM05D004746 ORTHO05D005863 0.0e+00 1531.9 1009 76.3
Duzib093G0324 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1529.6 1010 75.0
Eucgr.A00543 Eucalyptus grandis HOM05D004746 ORTHO05D005863 0.0e+00 1524.2 1008 74.2
Duzib128G0341 Durio zibethinus HOM05D004746 ORTHO05D005863 0.0e+00 1520.8 1010 74.2
QL07p034923 Quercus lobata HOM05D004746 ORTHO05D005863 0.0e+00 1515.0 1010 74.8
Gorai.012G116700 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1514.6 1010 73.5
Gohir.D04G132800 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1514.2 1010 73.6
FvH4_4g00010 Fragaria vesca HOM05D004746 ORTHO05D005863 0.0e+00 1513.8 1010 74.3
PGR031G3962 Punica granatum HOM05D004746 ORTHO05D005863 0.0e+00 1513.0 1009 74.6
Actinidia11569 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1512.3 1009 74.8
Gohir.A04G093500 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1510.7 1010 73.4
Psat3g125960 Pisum sativum HOM05D004746 ORTHO05D005863 0.0e+00 1501.5 1009 74.1
Gorai.002G262500 Gossypium raimondii HOM05D004746 ORTHO05D005863 0.0e+00 1499.6 1010 73.2
TWI74G1023 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1499.2 1039 71.8
Potri.016G119900 Populus trichocarpa HOM05D004746 ORTHO05D005863 0.0e+00 1496.5 1010 74.6
Ca_07663_v3 Cicer arietinum L. HOM05D004746 ORTHO05D005863 0.0e+00 1496.1 1009 74.0
Gohir.A01G226580 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1494.6 1013 72.8
Lj1g0027952 Lotus japonicus HOM05D004746 ORTHO05D005863 0.0e+00 1491.1 1009 73.8
VMungo1383G1310 Vigna mungo HOM05D004746 ORTHO05D005863 0.0e+00 1489.6 1009 73.3
Glyma.18G203900 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1488.0 1009 73.4
Phvul.008G095700 Phaseolus vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1483.4 1009 73.0
FAN22G0460 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1478.0 1015 72.6
FAN17G1409 Fragaria x ananassa HOM05D004746 ORTHO05D005863 0.0e+00 1477.2 1015 72.5
Medtr7g069460 Medicago truncatula HOM05D004746 ORTHO05D005863 0.0e+00 1476.5 1007 72.7
Glyma.07G152800 Glycine max HOM05D004746 ORTHO05D005863 0.0e+00 1473.0 1009 72.9
C05p58920 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1471.8 1010 71.4
A05p39880 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1469.5 1010 71.3
BolC5t34545H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1469.5 1010 71.3
TPR.G35441 Trifolium pratense HOM05D004746 ORTHO05D005863 0.0e+00 1467.2 1009 72.5
BraSC256t45936Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1465.7 1010 71.1
vmacro20299 Vaccinium macrocarpon HOM05D004746 ORTHO05D005863 0.0e+00 1463.0 1081 69.8
EL10Ac5g12532 Beta vulgaris HOM05D004746 ORTHO05D005863 0.0e+00 1462.6 1008 72.4
THA.LOC104823290 Tarenaya hassleriana HOM05D004746 ORTHO05D005863 0.0e+00 1462.2 1010 71.2
Lalb_Chr19g0124371 Lupinus albus HOM05D004746 ORTHO05D005863 0.0e+00 1461.0 1008 72.6
Sopen09g001110 Solanum pennellii HOM05D004746 ORTHO05D005863 0.0e+00 1459.9 1010 71.8
Lsat_1_v5_gn_8_100840 Lactuca sativa HOM05D004746 ORTHO05D005863 0.0e+00 1456.4 1010 72.5
CANSAT56G3938 Cannabis sativa HOM05D004746 ORTHO05D005863 0.0e+00 1455.3 1009 72.9
Cc06_g01090 Coffea canephora HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 1010 71.8
Thhalv10019980m.g Eutrema salsugineum HOM05D004746 ORTHO05D005863 0.0e+00 1454.9 1010 71.0
Carub.0003s0809 Capsella rubella HOM05D004746 ORTHO05D005863 0.0e+00 1452.6 1010 70.7
Migut.J00134 Erythranthe guttata HOM05D004746 ORTHO05D005863 0.0e+00 1452.2 1005 71.2
Sp3g07380 Schrenkiella parvula HOM05D004746 ORTHO05D005863 0.0e+00 1449.5 1010 70.1
AL3G19980 Arabidopsis lyrata HOM05D004746 ORTHO05D005863 0.0e+00 1446.8 1010 70.2
Aa31LG5G18930 Aethionema arabicum HOM05D004746 ORTHO05D005863 0.0e+00 1446.4 1010 70.1
C03p43890 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1445.3 1011 70.3
BolC3t16657H Brassica oleracea HOM05D004746 ORTHO05D005863 0.0e+00 1445.3 1011 70.4
AT3G08960 Arabidopsis thaliana HOM05D004746 ORTHO05D005863 0.0e+00 1444.1 1010 70.1
Oeu033576.1 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1443.3 1067 68.1
HanXRQChr12g0383171 Helianthus annuus HOM05D004746 ORTHO05D005863 0.0e+00 1441.0 998 72.2
arahy.Tifrunner.gnm1.ann1.R9K5QN Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1440.6 1009 71.8
A03p36250 Brassica napus HOM05D004746 ORTHO05D005863 0.0e+00 1440.6 1011 70.0
BraA03t12796Z Brassica rapa HOM05D004746 ORTHO05D005863 0.0e+00 1439.5 1011 69.8
ECA236G1680 Erigeron canadensis HOM05D004746 ORTHO05D005863 0.0e+00 1434.1 1007 70.8
MSTRG.10207 Avicennia marina HOM05D004746 ORTHO05D005863 0.0e+00 1433.7 1005 71.0
DCAR_018683 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1432.5 1041 68.9
Gohir.D01G216252 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1428.3 1010 71.1
DCAR_015390 Daucus carota HOM05D004746 ORTHO05D005863 0.0e+00 1426.0 1008 70.1
Ah.02g115550 Amaranthus hybridus HOM05D004746 ORTHO05D005863 0.0e+00 1425.6 1024 69.6
Sed0023855 Sechium edule HOM05D004746 ORTHO05D005863 0.0e+00 1418.7 1012 69.4
Dinv13139 Davidia involucrata HOM05D004746 ORTHO05D005863 0.0e+00 1418.3 914 76.5
CsaV3_3G021150 Cucumis sativus L. HOM05D004746 ORTHO05D005863 0.0e+00 1415.6 1012 69.5
AUR62030473 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1413.3 1014 69.9
Actinidia29088 Actinidia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1411.7 996 72.2
MELO3C020253.2 Cucumis melo HOM05D004746 ORTHO05D005863 0.0e+00 1411.7 1011 69.1
arahy.Tifrunner.gnm1.ann1.U1NNDF Arachis hypogaea HOM05D004746 ORTHO05D005863 0.0e+00 1410.2 1009 70.4
Hund10978 Selenicereus undatus HOM05D004746 ORTHO05D005863 0.0e+00 1404.0 1010 70.1
CiPaw.09G211600 Carya illinoinensis HOM05D004746 ORTHO05D005863 0.0e+00 1400.2 1010 70.5
Cfa017175 Carpinus fangiana HOM05D004746 ORTHO05D005863 0.0e+00 1397.5 914 75.9
Oeu063393.2 Olea europaea HOM05D004746 ORTHO05D005863 0.0e+00 1394.8 1142 63.1
TWI77G0319 Tripterygium wilfordii HOM05D004746 ORTHO05D005863 0.0e+00 1390.6 1009 70.0
SGA_v2.0_scaffold85G26719 Striga asiatica HOM05D004746 ORTHO05D005863 0.0e+00 1388.6 1064 66.1
MBI01_g40022_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 0.0e+00 1373.2 933 72.8
ATR0681G361 Amborella trichopoda HOM05D004746 ORTHO05D005863 0.0e+00 1357.4 1015 65.6
AUR62010444 Chenopodium quinoa HOM05D004746 ORTHO05D005863 0.0e+00 1356.7 1008 68.8
Sabra16G0115800 Salix brachista HOM05D004746 ORTHO05D005863 0.0e+00 1351.3 1095 65.1
Gohir.D01G216126 Gossypium hirsutum HOM05D004746 ORTHO05D005863 0.0e+00 1350.9 1025 67.8
Haze_21030 Corylus avellana HOM05D004746 ORTHO05D005863 0.0e+00 1339.7 1025 68.4
CDE08G1427 Ceratophyllum demersum HOM05D004746 ORTHO05D005863 0.0e+00 1330.5 1015 66.7
Peaxi162Scf01132g00141 Petunia axillaris HOM05D004746 ORTHO05D005863 0.0e+00 1318.9 1018 66.0
Sc01g0006870 Simmondsia chinensis HOM05D004746 ORTHO05D005863 0.0e+00 1311.6 910 71.0
BcaC01g04209 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1263.1 1011 63.3
HPP92_001120 Vanilla planifolia HOM05D004746 ORTHO05D005863 0.0e+00 1258.8 1014 63.2
unitig_26.g9084 Utricularia gibba HOM05D004746 ORTHO05D005863 0.0e+00 1257.3 1014 62.4
BcaC05g29630 Brassica carinata HOM05D004746 ORTHO05D005863 0.0e+00 1244.2 1000 63.4
CARHR083300 Cardamine hirsuta HOM05D004746 ORTHO05D005863 0.0e+00 1195.6 835 70.2
Zm00001eb111960 Zea mays HOM05D004746 ORTHO05D005863 0.0e+00 1174.8 964 60.7
SEGI_16247 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 0.0e+00 1120.9 882 61.6
Cpa.g.sc120.53 Carica papaya HOM05D004746 ORTHO05D005863 0.0e+00 1091.3 851 66.3
Lj3C949T2 Lonicera japonica HOM05D004746 ORTHO05D005863 1.1e-299 1033.5 822 65.2
TAR633G1894 Trochodendron aralioides HOM05D004746 ORTHO05D005863 1.1e-299 1033.5 611 82.7
Mapoly0056s0005 Marchantia polymorpha HOM05D004746 ORTHO05D005863 1.7e-297 1026.2 1024 50.0
Pp3c2_22550 Physcomitrium patens HOM05D004746 ORTHO05D005863 1.1e-294 1016.9 1015 50.0
Pp3c14_210 Physcomitrium patens HOM05D004746 ORTHO05D005863 4.5e-293 1011.5 1015 50.1
Nitab4.5_0000195g0230 Nicotiana tabacum HOM05D004746 ORTHO05D005863 2.9e-284 982.2 725 68.6
Nitab4.5_0009417g0010 Nicotiana tabacum HOM05D004746 ORTHO05D005863 8.4e-276 954.1 704 68.5
MD04G1000200 Malus domestica HOM05D004746 ORTHO05D005863 2.3e-273 946.0 611 74.5
AagrBONN_evm.TU.Sc2ySwM_362.215 Anthoceros agrestis HOM05D004746 ORTHO05D005863 5.1e-265 918.3 994 47.7
SMO241G0033 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 6.7e-257 891.3 1037 45.0
Prupe.1G000100 Prunus persica HOM05D004746 ORTHO05D005863 1.7e-239 833.6 617 67.4
Dinv16905 Davidia involucrata HOM05D004746 ORTHO05D005863 4.1e-238 828.9 537 76.0
SMO232G0101 Selaginella moellendorffii HOM05D004746 ORTHO05D005863 2.0e-232 810.1 1020 43.0
GSVIVG01003938001 Vitis vinifera HOM05D004746 ORTHO05D005863 2.2e-231 806.6 508 78.0
COL.COLO4_14503 Corchorus olitorius HOM05D004746 ORTHO05D005863 1.0e-228 797.7 507 75.1
FAN12G3124 Fragaria x ananassa HOM05D004746 ORTHO05D005863 5.4e-222 775.4 507 74.0
GSVIVG01003936001 Vitis vinifera HOM05D004746 ORTHO05D005863 6.4e-215 751.9 502 75.3
Os07g0693400 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 3.5e-205 719.5 1010 42.4
ClCG05G011310 Citrullus lanatus HOM05D004746 ORTHO05D005863 6.0e-173 612.5 468 66.5
MD04G1000400 Malus domestica HOM05D004746 ORTHO05D005863 4.8e-154 549.7 397 71.0
PRCOL_00000669 Prasinoderma coloniale HOM05D004746 ORTHO05D005863 6.1e-133 479.6 1039 31.4
HPP92_001053 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.3e-132 477.6 389 62.5
ClCG05G011270 Citrullus lanatus HOM05D004746 ORTHO05D005863 1.7e-127 461.5 545 48.3
HPP92_001054 Vanilla planifolia HOM05D004746 ORTHO05D005863 2.2e-127 461.1 404 60.4
Rhsim05G0217800 Rhododendron simsii HOM05D004746 ORTHO05D005863 6.8e-124 449.5 409 58.7
Cre02.g078885 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D005863 3.0e-116 424.1 1162 28.5
PGSC0003DMG400006259 Solanum tuberosum HOM05D004746 ORTHO05D005863 2.4e-113 414.5 308 68.8
Prupe.1G000300 Prunus persica HOM05D004746 ORTHO05D005863 4.5e-112 410.2 383 58.7
Glyma.16G097102 Glycine max HOM05D004746 ORTHO05D005863 4.1e-105 387.1 303 64.7
Dinv16904 Davidia involucrata HOM05D004746 ORTHO05D005863 1.2e-101 375.6 469 47.8
Glyma.16G097152 Glycine max HOM05D004746 ORTHO05D005863 4.9e-98 363.6 281 68.0
Os03g0292900 Oryza sativa ssp. japonica HOM05D004746 ORTHO05D005863 7.3e-86 323.2 300 53.0
Psat2g043480 Pisum sativum HOM05D004746 ORTHO05D005863 6.0e-80 303.5 222 68.5
CBR_g44564 Chara braunii HOM05D000019 ORTHO05D000048 5.2e-76 290.4 310 46.1
Lsat_1_v5_gn_5_53800 Lactuca sativa HOM05D004746 ORTHO05D005863 3.6e-69 267.7 213 63.8
Lj3A949T17 Lonicera japonica HOM05D004746 ORTHO05D005863 2.4e-68 265.0 245 60.8
ClCG05G011300 Citrullus lanatus HOM05D004746 ORTHO05D005863 2.7e-64 251.5 141 83.7
CBR_g44557 Chara braunii HOM05D004746 ORTHO05D005863 1.3e-53 216.1 177 59.9
CDE04G0811 Ceratophyllum demersum HOM05D000083 ORTHO05D000196 5.7e-46 190.7 136 70.6
Glyma.16G097051 Glycine max HOM05D004746 ORTHO05D005863 1.8e-44 185.7 126 73.0
CAN.G5.2 Capsicum annuum HOM05D004746 ORTHO05D005863 1.0e-34 153.3 132 61.4
Lsat_1_v5_gn_5_87500 Lactuca sativa HOM05D004746 ORTHO05D005863 4.2e-33 147.9 179 48.6
CBR_g44565 Chara braunii HOM05D004746 ORTHO05D001702 6.7e-31 140.6 183 40.4
COL.COLO4_14504 Corchorus olitorius HOM05D004746 ORTHO05D005863 4.4e-30 137.9 88 77.3
Lsat_1_v5_gn_5_55000 Lactuca sativa HOM05D004746 ORTHO05D005863 2.0e-27 129.0 89 66.3
CAN.G5.1 Capsicum annuum HOM05D004746 ORTHO05D005863 4.5e-27 127.9 92 66.3
CAN.G610.28 Capsicum annuum HOM05D004746 ORTHO05D005863 5.9e-27 127.5 79 78.5
Psat0ss9382g0120 Pisum sativum HOM05D002370 ORTHO05D003878 5.0e-26 124.4 82 70.7
Psat3g181680 Pisum sativum HOM05D004746 ORTHO05D005863 3.9e-23 114.8 78 70.5
SEGI_11102 Sequoiadendron giganteum HOM05D004746 ORTHO05D005863 5.7e-22 110.9 123 51.2
Psat2g086560 Pisum sativum HOM05D004629 ORTHO05D002382 2.8e-21 108.6 68 75.0
Lsat_1_v5_gn_6_87921 Lactuca sativa HOM05D004228 ORTHO05D005137 4.5e-19 101.3 106 56.6
Lj3A949T18 Lonicera japonica HOM05D004746 ORTHO05D005863 2.2e-18 99.0 76 64.5
MD14G1122700 Malus domestica HOM05D000325 ORTHO05D001655 2.5e-17 95.5 109 50.5
Pp3c15_21650 Physcomitrium patens HOM05D002786 ORTHO05D003493 1.8e-15 89.4 869 22.2
CBR_g44559 Chara braunii HOM05D000019 ORTHO05D000353 8.8e-15 87.0 103 47.6
SalBow5G0496 Salvia bowleyana HOM05D004746 ORTHO05D005863 2.6e-14 85.5 78 53.8
Cre02.g084650 Chlamydomonas reinhardtii HOM05D004746 ORTHO05D146592 1.3e-13 83.2 580 21.9
MBI01_g36267_MAGBIO Magnolia biondii HOM05D004746 ORTHO05D005863 3.1e-12 78.6 47 72.3
Mapoly0014s0213 Marchantia polymorpha HOM05D002786 ORTHO05D003493 1.6e-11 76.3 174 32.2
Cpa.g.sc120.51 Carica papaya HOM05D004746 ORTHO05D005863 3.5e-11 75.1 47 74.5
FAN17G0995 Fragaria x ananassa HOM05D004746 ORTHO05D005863 4.5e-11 74.7 56 66.1
AL1G39580 Arabidopsis lyrata HOM05D001046 ORTHO05D005883 7.7e-11 73.9 133 33.8
Pp3c9_22260 Physcomitrium patens HOM05D002786 ORTHO05D003493 7.7e-11 73.9 168 31.0
AT1G26170 Arabidopsis thaliana HOM05D001046 ORTHO05D005883 2.9e-10 72.0 133 33.1
Sp1g22490 Schrenkiella parvula HOM05D001046 ORTHO05D005883 1.5e-09 69.7 143 30.8
AagrBONN_evm.TU.Sc2ySwM_344.2799 Anthoceros agrestis HOM05D002786 ORTHO05D003493 1.9e-09 69.3 167 29.3
A07p12760 Brassica napus HOM05D001046 ORTHO05D005883 1.9e-09 69.3 148 30.4
CAN.G740.7 Capsicum annuum HOM05D004746 ORTHO05D005863 1.9e-09 69.3 47 70.2
CARHR025740 Cardamine hirsuta HOM05D001046 ORTHO05D005883 3.2e-09 68.6 133 32.3
Psat0s1759g0080 Pisum sativum HOM05D001955 ORTHO05D001917 6.1e-08 64.3 39 69.2
BolC7t42425H Brassica oleracea HOM05D001046 ORTHO05D005883 1.4e-07 63.2 158 29.1
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.8e-07 62.8 47 53.2
BcaC06g35168 Brassica carinata HOM05D001046 ORTHO05D005883 3.0e-07 62.0 145 29.0
C07p19150 Brassica napus HOM05D001046 ORTHO05D005883 3.0e-07 62.0 158 28.5
Lj2g0002950 Lotus japonicus HOM05D001046 ORTHO05D005883 6.8e-07 60.8 143 26.6
Lalb_Chr17g0342751 Lupinus albus HOM05D003602 ORTHO05D004808 2.6e-06 58.9 135 28.9
HPP92_002938 Vanilla planifolia HOM05D003602 ORTHO05D004808 3.4e-06 58.5 144 27.8
GSVIVG01012023001 Vitis vinifera HOM05D001046 ORTHO05D005883 4.4e-06 58.2 137 24.8
ATR0609G059 Amborella trichopoda HOM05D002786 ORTHO05D003493 5.7e-06 57.8 150 26.7
SalBow6G0725 Salvia bowleyana HOM05D002786 ORTHO05D003493 5.7e-06 57.8 202 25.7


User provided reference genes

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