Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0715 Papaver somniferum HOM05D007481 ORTHO05D009444 3.5e-146 521.5 253 100.0
PSO339G5056 Papaver somniferum HOM05D007481 ORTHO05D009444 8.4e-132 473.8 252 92.5
Nn2g13707 Nelumbo nucifera HOM05D007481 ORTHO05D009444 2.9e-100 369.0 252 72.2
QL07p035708 Quercus lobata HOM05D007481 ORTHO05D009444 3.5e-98 362.1 254 68.9
Potri.006G100100 Populus trichocarpa HOM05D007481 ORTHO05D009444 1.1e-96 357.1 247 70.0
COL.COLO4_14539 Corchorus olitorius HOM05D007481 ORTHO05D009444 3.3e-96 355.5 251 66.1
CiPaw.10G156500 Carya illinoinensis HOM05D007481 ORTHO05D009444 4.3e-96 355.1 247 69.2
Thecc.05G016400 Theobroma cacao HOM05D007481 ORTHO05D009444 5.7e-96 354.8 259 66.0
Prupe.6G277100 Prunus persica HOM05D007481 ORTHO05D009444 1.3e-95 353.6 245 68.2
GSVIVG01033961001 Vitis vinifera HOM05D007481 ORTHO05D009444 4.8e-95 351.7 256 66.4
MD04G1152000 Malus domestica HOM05D007481 ORTHO05D009444 6.3e-95 351.3 250 65.6
Aqoxy2G00902 Aquilegia oxysepala HOM05D007481 ORTHO05D009444 1.1e-94 350.5 250 69.6
ECA248G3524 Erigeron canadensis HOM05D007481 ORTHO05D009444 1.1e-94 350.5 243 67.5
Gohir.D09G160700 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.1e-94 350.5 253 65.2
CSS0016102 Camellia sinensis var. sinensis HOM05D007481 ORTHO05D009444 1.4e-94 350.1 249 68.3
RcHm_v2.0_Chr3g0463171 Rosa chinensis HOM05D007481 ORTHO05D009444 1.8e-94 349.7 250 66.4
Sed0020862 Sechium edule HOM05D007481 ORTHO05D009444 5.3e-94 348.2 254 66.1
CAN.G616.2 Capsicum annuum HOM05D007481 ORTHO05D009444 1.2e-93 347.1 247 67.6
Cfa017210 Carpinus fangiana HOM05D007481 ORTHO05D009444 2.6e-93 345.9 233 68.2
Manes.09G104600 Manihot esculenta HOM05D007481 ORTHO05D009444 4.5e-93 345.1 246 67.5
Aa31LG1G23100 Aethionema arabicum HOM05D007481 ORTHO05D009444 5.9e-93 344.7 246 65.0
FAN05G5358 Fragaria x ananassa HOM05D007481 ORTHO05D009444 5.9e-93 344.7 249 65.1
Sabra06G0076900 Salix brachista HOM05D007481 ORTHO05D009444 1.3e-92 343.6 256 64.5
PGR031G3607 Punica granatum HOM05D007481 ORTHO05D009444 1.7e-92 343.2 244 67.2
Eucgr.B02817 Eucalyptus grandis HOM05D007481 ORTHO05D009444 2.9e-92 342.4 247 64.4
CsaV3_4G026270 Cucumis sativus L. HOM05D007481 ORTHO05D009444 3.8e-92 342.0 239 68.2
PGSC0003DMG400011097 Solanum tuberosum HOM05D007481 ORTHO05D009444 3.8e-92 342.0 252 65.1
Actinidia11588 Actinidia chinensis HOM05D007481 ORTHO05D009444 6.5e-92 341.3 246 68.7
ClCG04G007010 Citrullus lanatus HOM05D007481 ORTHO05D009444 6.5e-92 341.3 240 66.7
Dinv04699 Davidia involucrata HOM05D007481 ORTHO05D009444 6.5e-92 341.3 247 67.2
CANSAT35G1044 Cannabis sativa HOM05D007481 ORTHO05D009444 8.5e-92 340.9 249 63.1
HanXRQChr01g0007111 Helianthus annuus HOM05D007481 ORTHO05D009444 1.9e-91 339.7 249 63.5
Psat7g244960 Pisum sativum HOM05D007481 ORTHO05D009444 2.5e-91 339.3 245 64.9
Solyc10g085160.2 Solanum lycopersicum HOM05D007481 ORTHO05D009444 4.2e-91 338.6 250 64.8
Medtr4g012440 Medicago truncatula HOM05D007481 ORTHO05D009444 5.5e-91 338.2 247 64.8
Sopen10g034630 Solanum pennellii HOM05D007481 ORTHO05D009444 5.5e-91 338.2 250 64.8
Nitab4.5_0003666g0020 Nicotiana tabacum HOM05D007481 ORTHO05D009444 7.2e-91 337.8 250 65.2
TWI74G0365 Tripterygium wilfordii HOM05D007481 ORTHO05D009444 7.2e-91 337.8 247 66.0
Gorai.006G182400 Gossypium raimondii HOM05D007481 ORTHO05D009444 1.2e-90 337.0 288 57.3
Cc06_g01380 Coffea canephora HOM05D007481 ORTHO05D009444 2.1e-90 336.3 244 65.6
Lj3g0018029 Lotus japonicus HOM05D007481 ORTHO05D009444 7.9e-90 334.3 253 63.2
Migut.L02012 Erythranthe guttata HOM05D007481 ORTHO05D009444 1.0e-89 334.0 250 65.2
FAN02G0465 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.8e-89 333.2 253 62.8
Nitab4.5_0003024g0060 Nicotiana tabacum HOM05D007481 ORTHO05D009444 1.8e-89 333.2 263 62.0
Peaxi162Scf00009g01813 Petunia axillaris HOM05D007481 ORTHO05D009444 6.7e-89 331.3 250 63.6
THA.LOC104816191 Tarenaya hassleriana HOM05D007481 ORTHO05D009444 1.1e-88 330.5 249 63.5
Phvul.010G001400 Phaseolus vulgaris HOM05D007481 ORTHO05D009444 1.5e-88 330.1 253 62.1
Glyma.03G058200 Glycine max HOM05D007481 ORTHO05D009444 2.5e-88 329.3 253 62.5
Sc07g0006570 Simmondsia chinensis HOM05D007481 ORTHO05D009444 2.5e-88 329.3 244 64.3
SGA_v2.0_scaffold240G44095 Striga asiatica HOM05D003907 ORTHO05D004819 2.5e-88 329.3 241 64.7
Ca_20231_v3 Cicer arietinum L. HOM05D007481 ORTHO05D009444 3.3e-88 328.9 244 62.7
arahy.Tifrunner.gnm1.ann1.7RHW31 Arachis hypogaea HOM05D007481 ORTHO05D009444 4.3e-88 328.6 245 64.1
C02p00150 Brassica napus HOM05D007481 ORTHO05D009444 5.7e-88 328.2 245 62.9
BolC2t06012H Brassica oleracea HOM05D007481 ORTHO05D009444 1.6e-87 326.6 245 62.4
BraA02t04685Z Brassica rapa HOM05D007481 ORTHO05D009444 2.2e-87 326.2 245 62.4
BcaC03g13078 Brassica carinata HOM05D007481 ORTHO05D009444 2.8e-87 325.9 245 62.4
Sp6g40760 Schrenkiella parvula HOM05D007481 ORTHO05D009444 2.8e-87 325.9 242 61.6
BcaB05g21923 Brassica carinata HOM05D007481 ORTHO05D009444 4.8e-87 325.1 240 62.5
ATR0618G339 Amborella trichopoda HOM05D007481 ORTHO05D009444 2.4e-86 322.8 243 65.0
MSTRG.10219 Avicennia marina HOM05D007481 ORTHO05D009444 2.4e-86 322.8 257 63.0
Lalb_Chr07g0193571 Lupinus albus HOM05D007481 ORTHO05D009444 4.1e-86 322.0 244 63.5
Ciclev10012584m.g Citrus clementina HOM05D007481 ORTHO05D009444 1.2e-85 320.5 242 62.4
TPR.G13336 Trifolium pratense HOM05D007481 ORTHO05D009444 1.2e-85 320.5 250 62.0
Thhalv10014504m.g Eutrema salsugineum HOM05D007481 ORTHO05D009444 2.0e-85 319.7 244 61.5
Lj3A953G52 Lonicera japonica HOM05D007481 ORTHO05D009444 2.6e-85 319.3 255 62.7
AL6G10600 Arabidopsis lyrata HOM05D007481 ORTHO05D009444 3.4e-85 318.9 243 61.7
CARHR211840 Cardamine hirsuta HOM05D007481 ORTHO05D009444 5.9e-85 318.2 243 61.3
Carub.0006s0036 Capsella rubella HOM05D007481 ORTHO05D009444 1.7e-84 316.6 243 60.5
FAN14G0098 Fragaria x ananassa HOM05D007481 ORTHO05D009444 1.7e-84 316.6 309 52.8
AT5G01470 Arabidopsis thaliana HOM05D007481 ORTHO05D009444 6.5e-84 314.7 239 61.1
arahy.Tifrunner.gnm1.ann1.6XTR6T Arachis hypogaea HOM05D007481 ORTHO05D009444 9.4e-83 310.8 245 61.2
Duzib093G0021 Durio zibethinus HOM05D007481 ORTHO05D009444 9.4e-83 310.8 207 68.6
FAN09G2325 Fragaria x ananassa HOM05D007481 ORTHO05D009444 9.4e-83 310.8 249 61.0
unitig_736.g22787 Utricularia gibba HOM05D007481 ORTHO05D009444 1.2e-82 310.5 235 62.6
Ah.02g115900 Amaranthus hybridus HOM05D003907 ORTHO05D004819 1.6e-82 310.1 255 57.3
Lsat_1_v5_gn_5_149561 Lactuca sativa HOM05D007481 ORTHO05D009444 2.8e-79 299.3 243 59.7
vmacro20262 Vaccinium macrocarpon HOM05D007481 ORTHO05D009444 6.3e-79 298.1 253 61.7
TAR633G1799 Trochodendron aralioides HOM05D007481 ORTHO05D009444 1.8e-78 296.6 257 60.3
Zm00001eb063270 Zea mays HOM05D007481 ORTHO05D009444 1.8e-78 296.6 261 56.3
SEGI_08492 Sequoiadendron giganteum HOM05D007481 ORTHO05D009444 2.2e-76 289.7 280 53.6
Hund11009 Selenicereus undatus HOM05D007481 ORTHO05D009444 1.1e-75 287.3 276 51.8
Rhsim05G0214800 Rhododendron simsii HOM05D007481 ORTHO05D009444 3.6e-74 282.3 301 49.8
Os03g0826700 Oryza sativa ssp. japonica HOM05D007481 ORTHO05D009444 3.0e-73 279.3 253 56.9
MELO3C003292.2 Cucumis melo HOM05D007481 ORTHO05D009444 2.0e-72 276.6 195 67.7
Gohir.A09G165100 Gossypium hirsutum HOM05D007481 ORTHO05D009444 1.3e-71 273.9 195 66.2
FvH4_6g11480 Fragaria vesca HOM05D007481 ORTHO05D009444 1.8e-70 270.0 184 68.5
SMO119G0350 Selaginella moellendorffii HOM05D007481 ORTHO05D009444 1.6e-69 266.9 209 61.2
CDE02G3625 Ceratophyllum demersum HOM05D007481 ORTHO05D009444 7.7e-69 264.6 190 69.5
SalBow4G1731 Salvia bowleyana HOM05D007481 ORTHO05D009444 2.9e-68 262.7 182 65.9
Pp3c17_21930 Physcomitrium patens HOM05D007481 ORTHO05D009444 1.5e-67 260.4 274 50.4
AagrBONN_evm.TU.Sc2ySwM_228.1780 Anthoceros agrestis HOM05D007481 ORTHO05D009444 6.1e-66 255.0 213 56.3
Haze_20985 Corylus avellana HOM05D007481 ORTHO05D009444 8.0e-66 254.6 262 54.2
Mapoly0103s0024 Marchantia polymorpha HOM05D007481 ORTHO05D009444 1.2e-64 250.8 270 48.1
Cpa.g.sc11.154 Carica papaya HOM05D007481 ORTHO05D009444 4.4e-64 248.8 246 54.5
CBR_g4113 Chara braunii HOM05D007481 ORTHO05D009444 9.1e-62 241.1 283 46.6
MBI14_g30737_MAGBIO Magnolia biondii HOM05D007481 ORTHO05D009444 1.5e-59 233.8 259 50.6
FAN14G2270 Fragaria x ananassa HOM05D000872 ORTHO05D000777 6.1e-58 228.4 313 45.4
HPP92_003771 Vanilla planifolia HOM05D007481 ORTHO05D009444 3.7e-47 192.6 181 57.5
DCAR_015418 Daucus carota HOM05D007481 ORTHO05D009444 2.4e-46 189.9 135 66.7
Atru.chr8.2241 Acer truncatum HOM05D007481 ORTHO05D009444 5.0e-44 182.2 116 74.1
VMungo0331G0457 Vigna mungo HOM05D007481 ORTHO05D009444 3.3e-43 179.5 137 62.0
Eucgr.B02818 Eucalyptus grandis HOM05D007481 ORTHO05D009444 2.3e-20 103.6 89 56.2
EL10Ac5g12562 Beta vulgaris HOM05D007481 ORTHO05D009444 3.9e-20 102.8 94 52.1
Oeu006297.1 Olea europaea HOM05D007481 ORTHO05D009444 1.9e-19 100.5 86 57.0
AUR62030437 Chenopodium quinoa HOM05D007481 ORTHO05D009444 1.2e-10 71.2 40 70.0
Pp3c3_3170 Physcomitrium patens HOM05D006745 ORTHO05D008449 1.4e-09 67.8 159 29.6
Os02g0120300 Oryza sativa ssp. japonica HOM05D006745 ORTHO05D008449 1.2e-08 64.7 121 31.4
Cc07_g11200 Coffea canephora HOM05D006745 ORTHO05D008449 2.0e-08 63.9 121 30.6
SalBow3G1250 Salvia bowleyana HOM05D006745 ORTHO05D008449 4.4e-08 62.8 168 29.8
BcaC04g22675 Brassica carinata HOM05D006745 ORTHO05D008449 1.7e-07 60.8 122 31.1
Lsat_1_v5_gn_3_71521 Lactuca sativa HOM05D006745 ORTHO05D008449 1.7e-07 60.8 120 28.3
THA.LOC104817830 Tarenaya hassleriana HOM05D006745 ORTHO05D008449 1.7e-07 60.8 139 29.5
BcaC04g22678 Brassica carinata HOM05D006745 ORTHO05D008449 2.2e-07 60.5 120 30.8
BolC9t54579H Brassica oleracea HOM05D006745 ORTHO05D008449 2.2e-07 60.5 120 30.8
Carub.0002s0099 Capsella rubella HOM05D006745 ORTHO05D008449 2.2e-07 60.5 120 30.0
BcaB07g31542 Brassica carinata HOM05D006745 ORTHO05D008449 2.9e-07 60.1 120 30.8
Manes.01G150100 Manihot esculenta HOM05D006745 ORTHO05D008449 2.9e-07 60.1 195 28.7
PSO675G1483 Papaver somniferum HOM05D006745 ORTHO05D008449 2.9e-07 60.1 146 28.8
RcHm_v2.0_Chr2g0101571 Rosa chinensis HOM05D005677 ORTHO05D006966 2.9e-07 60.1 182 27.5
Aa31LG2G1020 Aethionema arabicum HOM05D006745 ORTHO05D008449 4.9e-07 59.3 121 29.8
A09p13970 Brassica napus HOM05D006745 ORTHO05D008449 4.9e-07 59.3 120 30.8
PGR119G0426 Punica granatum HOM05D006745 ORTHO05D008449 4.9e-07 59.3 140 30.0
Zm00001eb229980 Zea mays HOM05D006745 ORTHO05D008449 4.9e-07 59.3 121 28.9
Sc22g0002270 Simmondsia chinensis HOM05D006745 ORTHO05D008449 6.4e-07 58.9 172 30.2
PSO541G1183 Papaver somniferum HOM05D006745 ORTHO05D008449 1.1e-06 58.2 174 25.9
HanXRQChr16g0531741 Helianthus annuus HOM05D006745 ORTHO05D008449 1.4e-06 57.8 119 28.6
Nn6g31942 Nelumbo nucifera HOM05D006745 ORTHO05D008449 1.4e-06 57.8 170 24.7
Eucgr.I02315 Eucalyptus grandis HOM05D006745 ORTHO05D008449 1.9e-06 57.4 140 28.6
SGA_v2.0_scaffold77G25309 Striga asiatica HOM05D006745 ORTHO05D008449 1.9e-06 57.4 173 27.2
TWI73G1304 Tripterygium wilfordii HOM05D006745 ORTHO05D008449 1.9e-06 57.4 170 27.1
AL2G11270 Arabidopsis lyrata HOM05D006745 ORTHO05D008449 2.4e-06 57.0 120 29.2
Haze_03682 Corylus avellana HOM05D006745 ORTHO05D008449 2.4e-06 57.0 191 24.1
FAN26G2780 Fragaria x ananassa HOM05D005677 ORTHO05D006966 3.2e-06 56.6 198 25.3
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 3.2e-06 56.6 119 28.6
Solyc02g061950.4 Solanum lycopersicum HOM05D006745 ORTHO05D008449 3.2e-06 56.6 174 27.0
HPP92_012950 Vanilla planifolia HOM05D006745 ORTHO05D008449 3.2e-06 56.6 146 27.4
Lsat_1_v5_gn_4_152101 Lactuca sativa HOM05D005677 ORTHO05D006966 4.2e-06 56.2 138 31.2
arahy.Tifrunner.gnm1.ann1.DU2BQF Arachis hypogaea HOM05D006745 ORTHO05D008449 5.4e-06 55.8 139 30.2
arahy.Tifrunner.gnm1.ann1.EE1FTG Arachis hypogaea HOM05D006745 ORTHO05D008449 5.4e-06 55.8 139 30.2
Migut.N00678 Erythranthe guttata HOM05D006745 ORTHO05D008449 5.4e-06 55.8 119 26.1
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 5.4e-06 55.8 143 30.8
MELO3C007934.2 Cucumis melo HOM05D006745 ORTHO05D008449 7.1e-06 55.5 129 27.9
AUR62003702 Chenopodium quinoa HOM05D006745 ORTHO05D008449 9.3e-06 55.1 169 27.8
CsaV3_6G047410 Cucumis sativus L. HOM05D006745 ORTHO05D008449 9.3e-06 55.1 128 27.3
ECA246G0119 Erigeron canadensis HOM05D006745 ORTHO05D008449 9.3e-06 55.1 120 27.5
FvH4_1g13310 Fragaria vesca HOM05D005677 ORTHO05D006966 9.3e-06 55.1 198 25.3
FAN19G0062 Fragaria x ananassa HOM05D005677 ORTHO05D006966 9.3e-06 55.1 198 25.3


User provided reference genes

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