Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0535 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 2192.5 1074 100.0
PSO339G1765 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 1918.3 1128 85.0
Dinv31713 Davidia involucrata HOM05D007235 ORTHO05D008985 0.0e+00 1381.3 1187 59.0
Dinv31712 Davidia involucrata HOM05D007235 ORTHO05D008985 0.0e+00 1373.6 1184 58.6
Atru.chr8.1458 Acer truncatum HOM05D007235 ORTHO05D008985 0.0e+00 1371.7 1131 61.1
Aqoxy2G01076 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 0.0e+00 1369.4 1205 58.6
MD12G1029200 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1365.1 1180 59.3
Aqoxy2G01105 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 0.0e+00 1360.9 1198 58.3
Prupe.7G102400 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1356.3 1179 58.8
CSS0040083 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1350.5 1174 58.0
CSS0010120 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1344.7 1147 59.2
FvH4_6g19350 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1340.9 1189 57.8
CSS0012377 Camellia sinensis var. sinensis HOM05D007235 ORTHO05D008985 0.0e+00 1338.6 1149 59.0
Cfa016637 Carpinus fangiana HOM05D007235 ORTHO05D008985 0.0e+00 1338.6 1109 61.8
FAN02G2734 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1337.8 1184 58.0
FAN14G5756 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1337.0 1189 57.7
CiPaw.10G011900 Carya illinoinensis HOM05D007235 ORTHO05D008985 0.0e+00 1329.7 1149 58.7
PSO801G0111 Papaver somniferum HOM05D007235 ORTHO05D008985 0.0e+00 1313.9 999 68.0
Manes.09G053100 Manihot esculenta HOM05D007235 ORTHO05D008985 0.0e+00 1312.7 1173 57.4
Duzib093G1209 Durio zibethinus HOM05D007235 ORTHO05D008985 0.0e+00 1312.4 1164 58.5
Lj2C141T11 Lonicera japonica HOM05D007235 ORTHO05D008985 0.0e+00 1294.3 1138 57.4
Rhsim03G0070500 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1290.0 1173 55.8
Actinidia05406 Actinidia chinensis HOM05D007235 ORTHO05D008985 0.0e+00 1288.9 1190 56.1
FvH4_6g19352 Fragaria vesca HOM05D007235 ORTHO05D008985 0.0e+00 1288.1 1166 57.5
TWI74G0874 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 0.0e+00 1278.5 1184 55.7
TWI74G1128 Tripterygium wilfordii HOM05D007235 ORTHO05D008985 0.0e+00 1271.5 1184 55.7
Haze_19642 Corylus avellana HOM05D007235 ORTHO05D008985 0.0e+00 1268.8 1077 60.7
Potri.006G210150 Populus trichocarpa HOM05D007235 ORTHO05D008985 0.0e+00 1266.9 1154 56.8
Potri.006G210325 Populus trichocarpa HOM05D007235 ORTHO05D008985 0.0e+00 1265.8 1184 55.7
FAN14G3457 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1264.2 1190 55.6
Rhsim03G0072800 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1261.1 1169 55.3
CsaV3_6G040770 Cucumis sativus L. HOM05D007235 ORTHO05D008985 0.0e+00 1257.7 1173 54.5
Lsat_1_v5_gn_9_21080 Lactuca sativa HOM05D007235 ORTHO05D008985 0.0e+00 1246.9 1168 55.7
Prupe.8G215200 Prunus persica HOM05D007235 ORTHO05D008985 0.0e+00 1242.6 1204 54.6
Sabra06G0161900 Salix brachista HOM05D007235 ORTHO05D008985 0.0e+00 1240.3 1121 56.9
ClCG04G010150 Citrullus lanatus HOM05D007235 ORTHO05D008985 0.0e+00 1237.2 1165 54.8
SalBow3G3787 Salvia bowleyana HOM05D007235 ORTHO05D008985 0.0e+00 1204.1 1171 53.5
MELO3C024556.2 Cucumis melo HOM05D007235 ORTHO05D008985 0.0e+00 1203.0 1285 49.4
QL07p038338 Quercus lobata HOM05D007235 ORTHO05D008985 0.0e+00 1201.0 1090 56.2
SalBow3G1230 Salvia bowleyana HOM05D007235 ORTHO05D008985 0.0e+00 1192.9 1162 52.7
FAN02G0370 Fragaria x ananassa HOM05D007235 ORTHO05D008985 0.0e+00 1187.2 1106 56.3
MD10G1176100 Malus domestica HOM05D007235 ORTHO05D008985 0.0e+00 1186.0 1188 52.8
Rhsim03G0070400 Rhododendron simsii HOM05D007235 ORTHO05D008985 0.0e+00 1183.3 1098 55.3
TAR623G1371 Trochodendron aralioides HOM05D007235 ORTHO05D008985 0.0e+00 1178.3 1008 60.0
DCAR_013408 Daucus carota HOM05D007235 ORTHO05D008985 0.0e+00 1176.4 1116 53.7
MBI17_g35889_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 0.0e+00 1159.4 1214 51.3
HPP92_006812 Vanilla planifolia HOM05D007235 ORTHO05D008985 0.0e+00 1134.0 1185 49.5
DCAR_007760 Daucus carota HOM05D007235 ORTHO05D008985 0.0e+00 1120.1 1176 50.3
Cc06_g21800 Coffea canephora HOM05D007235 ORTHO05D008985 5.6e-310 1067.8 1106 51.4
Duzib106G1334 Durio zibethinus HOM05D007235 ORTHO05D008985 4.9e-306 1054.7 1007 54.9
GSVIVG01033880001 Vitis vinifera HOM05D007235 ORTHO05D008985 9.2e-297 1023.8 842 61.5
SEGI_22450 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 1.7e-290 1003.0 1115 48.3
Sed0026179 Sechium edule HOM05D007235 ORTHO05D008985 4.1e-289 998.4 884 57.2
Gorai.002G238500 Gossypium raimondii HOM05D007235 ORTHO05D008985 1.2e-288 996.9 861 59.5
Atru.chr8.1456 Acer truncatum HOM05D007235 ORTHO05D008985 1.9e-286 989.6 871 57.2
Ciclev10011029m.g Citrus clementina HOM05D007235 ORTHO05D008985 1.2e-285 986.9 902 56.2
Migut.J01009 Erythranthe guttata HOM05D007235 ORTHO05D008985 4.1e-281 971.8 1032 50.0
ATR0820G239 Amborella trichopoda HOM05D007235 ORTHO05D008985 1.7e-279 966.5 895 55.1
Gohir.D01G194350 Gossypium hirsutum HOM05D007235 ORTHO05D008985 8.7e-279 964.1 920 55.3
Gohir.A01G204950 Gossypium hirsutum HOM05D007235 ORTHO05D008985 1.1e-276 957.2 866 57.7
Lj7C625T8 Lonicera japonica HOM05D007235 ORTHO05D008985 2.6e-267 926.0 875 53.6
RcHm_v2.0_Chr3g0474611 Rosa chinensis HOM05D007235 ORTHO05D008985 8.7e-255 884.4 777 58.8
SEGI_15434 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 1.2e-248 864.0 946 49.2
RcHm_v2.0_Chr3g0474651 Rosa chinensis HOM05D007235 ORTHO05D008985 4.1e-244 849.0 777 57.0
Migut.J01008 Erythranthe guttata HOM05D007235 ORTHO05D008985 3.9e-239 832.4 830 52.7
AagrBONN_evm.TU.Sc2ySwM_228.2009 Anthoceros agrestis HOM05D007235 ORTHO05D008985 3.8e-234 815.8 1160 40.0
Cc06_g21890 Coffea canephora HOM05D007235 ORTHO05D008985 2.2e-229 800.0 758 54.0
COL.COLO4_29683 Corchorus olitorius HOM05D007235 ORTHO05D008985 2.7e-211 740.0 660 57.7
MBI17_g41037_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 4.4e-206 722.6 679 56.1
Mapoly0090s0057 Marchantia polymorpha HOM05D007235 ORTHO05D008985 7.5e-206 721.8 1264 36.0
Hma1.2p1_0769F.1_g215770 Hydrangea macrophylla HOM05D007235 ORTHO05D008985 2.9e-194 683.3 620 55.3
Haze_19644 Corylus avellana HOM05D007235 ORTHO05D008985 6.0e-163 579.3 624 51.4
TAR623G0688 Trochodendron aralioides HOM05D007235 ORTHO05D008985 6.2e-160 569.3 479 59.7
Aqoxy2G01077 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 1.8e-159 567.8 435 64.1
PSO339G2372 Papaver somniferum HOM05D007235 ORTHO05D008985 6.2e-152 542.7 416 66.1
Haze_19643 Corylus avellana HOM05D007235 ORTHO05D008985 4.5e-142 510.0 486 56.8
MBI17_g48245_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 6.5e-141 506.1 531 52.0
Aqoxy2G01078 Aquilegia oxysepala HOM05D007235 ORTHO05D008985 3.2e-140 503.8 422 60.7
QL07p038322 Quercus lobata HOM05D007235 ORTHO05D008985 2.2e-104 384.8 350 54.3
COL.COLO4_29681 Corchorus olitorius HOM05D007235 ORTHO05D008985 5.7e-97 360.1 316 57.6
Lj7A625G73 Lonicera japonica HOM05D007235 ORTHO05D008985 1.4e-95 355.5 284 64.1
MBI17_g41038_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 8.8e-90 336.3 334 51.5
MBI17_g48244_MAGBIO Magnolia biondii HOM05D007235 ORTHO05D008985 2.6e-89 334.7 353 49.6
Atru.chr8.1457 Acer truncatum HOM05D007235 ORTHO05D008985 1.7e-88 332.0 278 61.5
GSVIVG01033881001 Vitis vinifera HOM05D007235 ORTHO05D008985 1.2e-86 325.9 230 67.8
Gorai.002G238400 Gossypium raimondii HOM05D007235 ORTHO05D008985 9.5e-84 316.2 213 69.0
Gohir.A01G204900 Gossypium hirsutum HOM05D007235 ORTHO05D008985 3.4e-81 307.8 223 65.9
RcHm_v2.0_Chr3g0474671 Rosa chinensis HOM05D007235 ORTHO05D008985 7.0e-79 300.1 247 61.1
Ciclev10013621m.g Citrus clementina HOM05D007235 ORTHO05D008985 6.6e-77 293.5 230 61.3
Migut.J01007 Erythranthe guttata HOM05D007235 ORTHO05D008985 4.4e-73 280.8 218 60.1
QL07p038324 Quercus lobata HOM05D007235 ORTHO05D008985 8.3e-72 276.6 235 60.0
RcHm_v2.0_Chr3g0474591 Rosa chinensis HOM05D007235 ORTHO05D008985 4.6e-70 270.8 226 61.5
COL.COLO4_29682 Corchorus olitorius HOM05D007235 ORTHO05D008985 1.2e-65 256.1 207 63.8
Cfa016638 Carpinus fangiana HOM05D007235 ORTHO05D008985 7.5e-65 253.4 316 47.5
SEGI_13044 Sequoiadendron giganteum HOM05D007235 ORTHO05D008985 2.4e-63 248.4 211 55.9
Cfa021070 Carpinus fangiana HOM05D007235 ORTHO05D008985 5.6e-60 237.3 205 61.5
COL.COLO4_29684 Corchorus olitorius HOM05D002712 ORTHO05D007713 9.3e-39 166.8 131 64.9
ATR0820G010 Amborella trichopoda HOM05D007235 ORTHO05D008985 9.6e-36 156.8 127 55.9
Thecc.05G094000 Theobroma cacao HOM05D007235 ORTHO05D008985 6.9e-34 150.6 230 42.6
DCAR_007761 Daucus carota HOM05D007235 ORTHO05D008985 4.5e-33 147.9 109 64.2
QL07p038319 Quercus lobata HOM05D007235 ORTHO05D008985 1.0e-24 120.2 76 67.1
Cfa009503 Carpinus fangiana HOM05D007235 ORTHO05D008985 1.7e-24 119.4 757 22.7
QL07p038331 Quercus lobata HOM05D007235 ORTHO05D008985 3.8e-24 118.2 76 65.8
Actinidia37302 Actinidia chinensis HOM05D007235 ORTHO05D008985 2.8e-19 102.1 76 56.6
Dinv03307 Davidia involucrata HOM05D007235 ORTHO05D008985 2.2e-16 92.4 63 65.1
Dinv28424 Davidia involucrata HOM05D007235 ORTHO05D008985 3.2e-15 88.6 55 67.3
RcHm_v2.0_Chr3g0474631 Rosa chinensis HOM05D007235 ORTHO05D008985 1.0e-13 83.6 61 60.7
Ciclev10013607m.g Citrus clementina HOM05D007235 ORTHO05D008985 5.7e-12 77.8 68 55.9
Phvul.010G070584 Phaseolus vulgaris HOM05D001324 ORTHO05D001220 6.3e-11 74.3 547 23.2
CSS0032744 Camellia sinensis var. sinensis HOM05D001324 ORTHO05D001220 3.1e-10 72.0 530 22.5
Duzib212G0882 Durio zibethinus HOM05D001324 ORTHO05D001220 4.1e-10 71.6 535 20.6
VMungo1127G0502 Vigna mungo HOM05D001324 ORTHO05D001220 4.1e-10 71.6 551 22.9
CARHR003340 Cardamine hirsuta HOM05D001324 ORTHO05D001220 9.0e-10 70.5 550 21.6
Pp3c14_16140 Physcomitrium patens HOM05D001324 ORTHO05D001220 9.0e-10 70.5 540 22.8
C03p53160 Brassica napus HOM05D001324 ORTHO05D001220 1.2e-09 70.1 537 22.0
BcaC01g03373 Brassica carinata HOM05D001324 ORTHO05D001220 1.5e-09 69.7 543 21.2
BolC3t17581H Brassica oleracea HOM05D001324 ORTHO05D001220 1.5e-09 69.7 543 21.2
CSS0025103 Camellia sinensis var. sinensis HOM05D001324 ORTHO05D001220 1.5e-09 69.7 526 23.2
CiPaw.03G267800 Carya illinoinensis HOM05D001324 ORTHO05D001220 1.5e-09 69.7 541 22.6
QL09p040231 Quercus lobata HOM05D001324 ORTHO05D001220 2.0e-09 69.3 547 21.4
Glyma.12G132800 Glycine max HOM05D001324 ORTHO05D001220 2.6e-09 68.9 547 21.9
Lj6C627T4 Lonicera japonica HOM05D001324 ORTHO05D001220 2.6e-09 68.9 466 24.2
CiPaw.02G109200 Carya illinoinensis HOM05D001324 ORTHO05D001220 3.4e-09 68.6 551 22.1
Gohir.D09G229800 Gossypium hirsutum HOM05D001324 ORTHO05D001220 4.5e-09 68.2 210 31.0
CsaV3_3G028130 Cucumis sativus L. HOM05D001324 ORTHO05D001220 5.9e-09 67.8 545 20.9
Duzib151G0980 Durio zibethinus HOM05D001324 ORTHO05D001220 5.9e-09 67.8 211 30.3
Gohir.A10G109550 Gossypium hirsutum HOM05D001324 ORTHO05D001220 1.0e-08 67.0 541 22.6
MD14G1029500 Malus domestica HOM05D007235 ORTHO05D008985 1.0e-08 67.0 54 63.0
arahy.Tifrunner.gnm1.ann1.8CV590 Arachis hypogaea HOM05D001324 ORTHO05D001220 1.7e-08 66.2 569 22.1
CANSAT78G1809 Cannabis sativa HOM05D001324 ORTHO05D001220 2.9e-08 65.5 210 26.7
Lj1C71G11 Lonicera japonica HOM05D001324 ORTHO05D001220 2.9e-08 65.5 548 21.5
BcaB03g14624 Brassica carinata HOM05D001324 ORTHO05D001220 5.0e-08 64.7 539 21.2
Lalb_Chr01g0019591 Lupinus albus HOM05D001324 ORTHO05D001220 1.4e-07 63.2 554 21.3
Peaxi162Scf00045g01025 Petunia axillaris HOM05D001324 ORTHO05D001220 1.4e-07 63.2 489 22.9
Potri.004G234900 Populus trichocarpa HOM05D001324 ORTHO05D001220 1.4e-07 63.2 555 22.7
Glyma.10G183000 Glycine max HOM05D001324 ORTHO05D001220 2.5e-07 62.4 542 22.5
Aa31LG2G21800 Aethionema arabicum HOM05D001324 ORTHO05D001220 4.2e-07 61.6 217 25.8
Peaxi162Scf00045g01026 Petunia axillaris HOM05D001324 ORTHO05D001220 5.5e-07 61.2 489 23.1
Zm00001eb045960 Zea mays HOM05D001324 ORTHO05D001220 5.5e-07 61.2 559 21.6
A03p43260 Brassica napus HOM05D001324 ORTHO05D001220 7.2e-07 60.8 234 28.2
Hund11909 Selenicereus undatus HOM05D001324 ORTHO05D001220 9.4e-07 60.5 546 22.3
Psat3g057160 Pisum sativum HOM05D001324 ORTHO05D001220 1.6e-06 59.7 209 25.8
Dinv27074 Davidia involucrata HOM05D001324 ORTHO05D001220 2.1e-06 59.3 214 27.6
Cpa.g.sc2124.1 Carica papaya HOM05D001324 ORTHO05D001220 2.7e-06 58.9 543 21.2
ECA248G0785 Erigeron canadensis HOM05D001324 ORTHO05D001220 2.7e-06 58.9 562 22.1
QL06p019705 Quercus lobata HOM05D001324 ORTHO05D001220 3.6e-06 58.5 82 32.9
Rhsim13G0037900 Rhododendron simsii HOM05D001324 ORTHO05D001220 3.6e-06 58.5 233 27.5
Sp1g02830 Schrenkiella parvula HOM05D001324 ORTHO05D001220 3.6e-06 58.5 232 28.4
A10p02500 Brassica napus HOM05D001324 ORTHO05D001220 4.6e-06 58.2 213 27.7
BraA10t42518Z Brassica rapa HOM05D001324 ORTHO05D001220 7.9e-06 57.4 213 27.7


User provided reference genes

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