Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0450 Papaver somniferum HOM05D004806 ORTHO05D005397 0.0e+00 1371.3 717 100.0
PSO339G2633 Papaver somniferum HOM05D004806 ORTHO05D005397 0.0e+00 1281.9 748 92.0
TAR369G0441 Trochodendron aralioides HOM05D004806 ORTHO05D005397 5.6e-157 558.9 723 52.3
Nn2g11386 Nelumbo nucifera HOM05D004806 ORTHO05D005397 2.2e-153 547.0 733 50.3
MBI14_g36885_MAGBIO Magnolia biondii HOM05D004806 ORTHO05D005397 2.7e-151 540.0 752 49.9
Nn2g13619 Nelumbo nucifera HOM05D004806 ORTHO05D005397 9.6e-149 531.6 696 51.4
CSS0019944 Camellia sinensis var. sinensis HOM05D004806 ORTHO05D005397 6.0e-135 485.7 744 46.0
Dinv34423 Davidia involucrata HOM05D004806 ORTHO05D005397 6.0e-135 485.7 687 49.3
Dinv20955 Davidia involucrata HOM05D004806 ORTHO05D005397 2.8e-132 476.9 731 46.5
Dinv20988 Davidia involucrata HOM05D004806 ORTHO05D005397 2.8e-132 476.9 731 46.5
Gohir.D10G243800 Gossypium hirsutum HOM05D004806 ORTHO05D005397 2.8e-132 476.9 722 46.5
Aqoxy4G02663 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 3.7e-132 476.5 704 47.9
Thecc.10G026200 Theobroma cacao HOM05D004806 ORTHO05D005397 1.8e-131 474.2 737 45.5
Manes.10G017800 Manihot esculenta HOM05D004806 ORTHO05D005397 2.4e-131 473.8 618 49.0
Gorai.011G280200 Gossypium raimondii HOM05D004806 ORTHO05D005397 6.9e-131 472.2 723 46.5
Actinidia33944 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.8e-129 466.5 693 48.1
CiPaw.01G295700 Carya illinoinensis HOM05D004806 ORTHO05D005397 4.9e-129 466.1 655 46.3
Gohir.D06G170100 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.9e-129 466.1 683 47.0
RcHm_v2.0_Chr1g0369401 Rosa chinensis HOM05D004806 ORTHO05D005397 5.5e-128 462.6 711 45.9
Nitab4.5_0000737g0020 Nicotiana tabacum HOM05D004806 ORTHO05D005397 7.1e-128 462.2 657 47.9
Lj1C950G18 Lonicera japonica HOM05D004806 ORTHO05D005397 2.1e-127 460.7 705 45.5
Gorai.010G199100 Gossypium raimondii HOM05D004806 ORTHO05D005397 3.5e-127 459.9 667 46.5
Duzib114G0963 Durio zibethinus HOM05D004806 ORTHO05D005397 6.7e-126 455.7 727 45.3
Duzib106G0751 Durio zibethinus HOM05D004806 ORTHO05D005397 8.7e-126 455.3 627 48.2
Potri.010G192800 Populus trichocarpa HOM05D004806 ORTHO05D005397 3.3e-125 453.4 686 47.7
Gohir.A10G229600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.3e-125 453.0 719 46.0
Nitab4.5_0003720g0010 Nicotiana tabacum HOM05D004806 ORTHO05D005397 5.7e-125 452.6 680 46.5
FAN10G3438 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.8e-124 450.3 680 45.3
Atru.chr12.242 Acer truncatum HOM05D004806 ORTHO05D005397 3.7e-124 449.9 667 46.6
FvH4_7g24020 Fragaria vesca HOM05D004806 ORTHO05D005397 4.8e-124 449.5 685 45.3
Prupe.2G246100 Prunus persica HOM05D004806 ORTHO05D005397 4.8e-124 449.5 709 46.0
FAN06G0754 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.4e-123 448.0 680 45.1
FAN03G1683 Fragaria x ananassa HOM05D004806 ORTHO05D005397 1.8e-123 447.6 680 44.9
Gohir.A06G164600 Gossypium hirsutum HOM05D004806 ORTHO05D005397 4.0e-123 446.4 655 46.6
PGR142G0174 Punica granatum HOM05D004806 ORTHO05D005397 6.9e-123 445.7 691 44.4
Ciclev10030877m.g Citrus clementina HOM05D004806 ORTHO05D005397 9.0e-123 445.3 653 46.1
AUR62012206 Chenopodium quinoa HOM05D004806 ORTHO05D005397 1.5e-122 444.5 640 46.2
MD01G1147200 Malus domestica HOM05D004806 ORTHO05D005397 2.6e-122 443.7 716 45.0
Potri.008G064500 Populus trichocarpa HOM05D004806 ORTHO05D005397 2.6e-122 443.7 711 46.4
QL08p062653 Quercus lobata HOM05D004806 ORTHO05D005397 5.8e-122 442.6 705 44.1
Peaxi162Scf00401g00118 Petunia axillaris HOM05D004806 ORTHO05D005397 1.7e-121 441.0 657 46.4
AUR62022839 Chenopodium quinoa HOM05D004806 ORTHO05D005397 3.8e-121 439.9 643 45.1
TWI53G0900 Tripterygium wilfordii HOM05D004806 ORTHO05D005397 1.4e-120 438.0 706 45.3
Eucgr.G03032 Eucalyptus grandis HOM05D004806 ORTHO05D005397 9.3e-120 435.3 662 45.2
vmacro06995 Vaccinium macrocarpon HOM05D004806 ORTHO05D005397 1.1e-117 428.3 618 45.8
Cc02_g06920 Coffea canephora HOM05D004806 ORTHO05D005397 1.5e-117 427.9 685 45.1
CiPaw.02G189800 Carya illinoinensis HOM05D004806 ORTHO05D005397 1.9e-117 427.6 717 42.8
Sabra08G0047400 Salix brachista HOM05D004806 ORTHO05D005397 1.3e-116 424.9 716 44.7
MELO3C008275.2 Cucumis melo HOM05D004806 ORTHO05D005397 1.6e-116 424.5 691 43.7
PGSC0003DMG400027178 Solanum tuberosum HOM05D004806 ORTHO05D005397 2.2e-116 424.1 628 46.3
FAN01G2868 Fragaria x ananassa HOM05D004806 ORTHO05D005397 2.8e-116 423.7 730 42.1
Ah.10g036410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.8e-116 422.9 715 43.1
Solyc05g052630.4 Solanum lycopersicum HOM05D004806 ORTHO05D005397 4.8e-116 422.9 628 46.0
HanXRQChr14g0459971 Helianthus annuus HOM05D004806 ORTHO05D005397 6.3e-116 422.5 656 45.1
SalBow6G1823 Salvia bowleyana HOM05D004806 ORTHO05D005397 6.3e-116 422.5 732 43.0
SalBow6G1361 Salvia bowleyana HOM05D004806 ORTHO05D005397 8.2e-116 422.2 730 43.3
Sopen05g031160 Solanum pennellii HOM05D004806 ORTHO05D005397 2.4e-115 420.6 628 45.7
ECA238G2978 Erigeron canadensis HOM05D004806 ORTHO05D005397 5.3e-115 419.5 637 44.4
Hund15980 Selenicereus undatus HOM05D004806 ORTHO05D005397 2.0e-114 417.5 723 41.8
Ca_05931_v3 Cicer arietinum L. HOM05D004806 ORTHO05D005397 7.7e-114 415.6 733 41.3
Sc11g0007270 Simmondsia chinensis HOM05D004806 ORTHO05D005397 1.0e-113 415.2 699 44.6
Actinidia29677 Actinidia chinensis HOM05D004806 ORTHO05D005397 3.8e-113 413.3 719 43.5
Sed0002029 Sechium edule HOM05D004806 ORTHO05D005397 3.8e-113 413.3 711 42.8
Glyma.14G062000 Glycine max HOM05D004806 ORTHO05D005397 3.2e-112 410.2 714 43.7
COL.COLO4_25659 Corchorus olitorius HOM05D004806 ORTHO05D005397 4.2e-112 409.8 695 43.2
Lsat_1_v5_gn_2_121900 Lactuca sativa HOM05D004806 ORTHO05D005397 7.2e-112 409.1 693 41.8
Ah.16g103100 Amaranthus hybridus HOM05D004806 ORTHO05D005397 4.6e-111 406.4 694 42.9
Nitab4.5_0004338g0050 Nicotiana tabacum HOM05D004806 ORTHO05D005397 4.6e-111 406.4 659 42.3
Psat2g035600 Pisum sativum HOM05D004806 ORTHO05D005397 6.1e-111 406.0 658 43.2
arahy.Tifrunner.gnm1.ann1.76KK00 Arachis hypogaea HOM05D004806 ORTHO05D005397 2.3e-110 404.1 685 42.6
Phvul.008G226400 Phaseolus vulgaris HOM05D004806 ORTHO05D005397 2.3e-110 404.1 733 41.2
Hund13832 Selenicereus undatus HOM05D004806 ORTHO05D005397 3.9e-110 403.3 669 42.9
DCAR_027553 Daucus carota HOM05D004806 ORTHO05D005397 8.8e-110 402.1 705 43.0
VMungo0647G1582 Vigna mungo HOM05D004806 ORTHO05D005397 9.7e-109 398.7 699 42.1
Migut.F01427 Erythranthe guttata HOM05D004806 ORTHO05D005397 2.8e-108 397.1 698 41.5
TPR.G8038 Trifolium pratense HOM05D004806 ORTHO05D005397 3.7e-108 396.7 714 41.0
Medtr5g081880 Medicago truncatula HOM05D004806 ORTHO05D005397 8.2e-108 395.6 653 42.6
EL10Ac2g04786 Beta vulgaris HOM05D004806 ORTHO05D005397 1.5e-106 391.3 820 37.1
Aqoxy2G00978 Aquilegia oxysepala HOM05D004806 ORTHO05D005397 4.5e-106 389.8 569 48.2
Lalb_Chr04g0250791 Lupinus albus HOM05D004806 ORTHO05D005397 3.8e-105 386.7 702 41.5
arahy.Tifrunner.gnm1.ann1.13YYB8 Arachis hypogaea HOM05D004806 ORTHO05D005397 3.6e-103 380.2 592 43.9
CDE02G2339 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 3.0e-102 377.1 641 41.5
THA.LOC104824306 Tarenaya hassleriana HOM05D004806 ORTHO05D005397 8.8e-102 375.6 713 40.5
Nitab4.5_0002100g0120 Nicotiana tabacum HOM05D004806 ORTHO05D005397 9.7e-101 372.1 590 43.4
Aa31LG5G19660 Aethionema arabicum HOM05D004806 ORTHO05D005397 9.1e-99 365.5 695 39.0
Oeu055830.1 Olea europaea HOM05D004806 ORTHO05D005397 2.3e-94 350.9 682 40.2
HanXRQChr07g0200671 Helianthus annuus HOM05D004806 ORTHO05D005397 1.5e-93 348.2 673 39.7
unitig_52.g16836 Utricularia gibba HOM05D004806 ORTHO05D005397 2.6e-93 347.4 686 39.7
HPP92_018194 Vanilla planifolia HOM05D004806 ORTHO05D005397 2.6e-93 347.4 641 40.1
Carub.0004s2208 Capsella rubella HOM05D004806 ORTHO05D005397 1.7e-92 344.7 633 39.3
LjContig00357g0026481 Lotus japonicus HOM05D004806 ORTHO05D005397 2.8e-92 344.0 693 37.5
ClCG11G006350 Citrullus lanatus HOM05D004806 ORTHO05D005397 8.2e-92 342.4 590 43.7
CsaV3_6G001640 Cucumis sativus L. HOM05D004806 ORTHO05D005397 8.2e-92 342.4 580 43.4
Haze_17182 Corylus avellana HOM05D004806 ORTHO05D005397 2.2e-89 334.3 556 42.8
Sp4g22260 Schrenkiella parvula HOM05D004806 ORTHO05D005397 2.9e-89 334.0 646 39.0
AT2G39950 Arabidopsis thaliana HOM05D004806 ORTHO05D005397 1.5e-88 331.6 647 38.8
Zm00001eb297980 Zea mays HOM05D004806 ORTHO05D005397 1.0e-86 325.5 529 42.5
AL4G37530 Arabidopsis lyrata HOM05D004806 ORTHO05D005397 6.3e-84 316.2 655 38.2
BraA05t19615Z Brassica rapa HOM05D004806 ORTHO05D005397 2.4e-83 314.3 646 37.9
C04p07550 Brassica napus HOM05D004806 ORTHO05D005397 5.4e-83 313.2 646 37.9
BolC4t22372H Brassica oleracea HOM05D004806 ORTHO05D005397 5.4e-83 313.2 646 37.9
Thhalv10017559m.g Eutrema salsugineum HOM05D004806 ORTHO05D005397 2.7e-82 310.8 626 37.9
HanXRQChr08g0222261 Helianthus annuus HOM05D004806 ORTHO05D005397 1.9e-80 304.7 580 39.8
SGA_v2.0_scaffold76G25081 Striga asiatica HOM05D004806 ORTHO05D005397 6.3e-76 289.7 673 35.1
Sc11g0006990 Simmondsia chinensis HOM05D004806 ORTHO05D005397 5.4e-75 286.6 294 56.5
Lsat_1_v5_gn_8_12421 Lactuca sativa HOM05D004806 ORTHO05D005397 2.9e-73 280.8 585 39.0
GSVIVG01016366001 Vitis vinifera HOM05D004806 ORTHO05D005397 9.5e-72 275.8 219 65.8
SGA_v2.0_scaffold343G49443 Striga asiatica HOM05D004806 ORTHO05D005397 6.8e-70 269.6 560 38.6
Rhsim03G0140100 Rhododendron simsii HOM05D004806 ORTHO05D005397 1.2e-66 258.8 599 36.1
Oeu036630.1 Olea europaea HOM05D004806 ORTHO05D005397 4.6e-66 256.9 549 37.9
Sed0010788 Sechium edule HOM05D004806 ORTHO05D005397 2.3e-65 254.6 496 40.5
ATR0618G022 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.6e-64 250.0 251 56.6
Manes.07G125400 Manihot esculenta HOM05D004806 ORTHO05D005397 6.8e-62 243.0 450 42.4
CDE09G0712 Ceratophyllum demersum HOM05D004806 ORTHO05D005397 9.2e-59 232.6 278 48.6
Glyma.02G254400 Glycine max HOM05D004806 ORTHO05D005397 1.3e-57 228.8 513 38.6
TAR623G1028 Trochodendron aralioides HOM05D004806 ORTHO05D005397 6.2e-55 219.9 614 36.0
Lalb_Chr17g0346601 Lupinus albus HOM05D004806 ORTHO05D005397 2.4e-51 208.0 541 34.4
AagrBONN_evm.TU.Sc2ySwM_368.289 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.7e-49 201.8 216 50.9
CARHR134870 Cardamine hirsuta HOM05D004806 ORTHO05D005397 3.0e-49 201.1 490 35.1
Mapoly0096s0071 Marchantia polymorpha HOM05D004806 ORTHO05D005397 1.5e-45 188.7 336 38.4
CBR_g37391 Chara braunii HOM05D004806 ORTHO05D005397 1.0e-41 176.0 414 33.3
Sabra10G0148400 Salix brachista HOM05D004806 ORTHO05D005397 6.0e-34 150.2 144 58.3
SMO358G0301 Selaginella moellendorffii HOM05D004806 ORTHO05D005397 4.3e-32 144.1 400 32.2
Oeu059753.1 Olea europaea HOM05D004806 ORTHO05D005397 1.3e-31 142.5 123 61.0
RcHm_v2.0_Chr1g0369361 Rosa chinensis HOM05D004806 ORTHO05D005397 2.1e-31 141.7 208 48.6
A05p06470 Brassica napus HOM05D004806 ORTHO05D005397 2.6e-29 134.8 144 52.8
MD07G1214200 Malus domestica HOM05D004806 ORTHO05D005397 3.8e-28 131.0 151 53.0
TPR.G40368 Trifolium pratense HOM05D004806 ORTHO05D005397 8.4e-28 129.8 130 55.4
SHI03525 Sapria himalayana HOM05D004806 ORTHO05D005397 2.4e-27 128.3 468 27.6
CDE09G1248 Ceratophyllum demersum HOM05D000530 ORTHO05D003341 3.5e-26 124.4 258 40.3
Lalb_Chr17g0346611 Lupinus albus HOM05D004806 ORTHO05D005397 7.9e-26 123.2 117 56.4
SHI03526 Sapria himalayana HOM05D004806 ORTHO05D005397 3.0e-25 121.3 138 47.8
BcaB02g09066 Brassica carinata HOM05D004806 ORTHO05D005397 4.3e-24 117.5 228 36.0
Oeu022381.1 Olea europaea HOM05D004806 ORTHO05D005397 2.0e-21 108.6 133 50.4
AagrBONN_evm.TU.Sc2ySwM_369.624 Anthoceros agrestis HOM05D004806 ORTHO05D005397 1.3e-20 105.9 104 50.0
Os07g0100500 Oryza sativa ssp. japonica HOM05D004806 ORTHO05D005397 4.9e-20 104.0 74 66.2
ATR0618G087 Amborella trichopoda HOM05D004806 ORTHO05D005397 2.7e-18 98.2 139 46.0
Haze_17183 Corylus avellana HOM05D004806 ORTHO05D005397 6.2e-15 87.0 84 54.8
ATR0723G011 Amborella trichopoda HOM05D004806 ORTHO05D005397 5.3e-14 84.0 74 56.8
SalBow6G4818 Salvia bowleyana HOM05D004806 ORTHO05D005397 5.3e-14 84.0 99 52.5
Zm00001eb057510 Zea mays HOM05D004806 ORTHO05D005397 5.3e-14 84.0 74 55.4
CAN.G853.43 Capsicum annuum HOM05D004806 ORTHO05D005397 3.8e-12 77.8 63 58.7
Oeu043075.1 Olea europaea HOM05D004806 ORTHO05D005397 2.5e-11 75.1 101 46.5
Pp3c26_8620 Physcomitrium patens HOM05D004806 ORTHO05D005397 2.7e-10 71.6 101 35.6
Ah.05g175410 Amaranthus hybridus HOM05D004806 ORTHO05D005397 2.5e-08 65.1 50 60.0
RcHm_v2.0_Chr1g0313541 Rosa chinensis HOM05D004806 ORTHO05D005397 7.4e-08 63.5 59 57.6
MBI19_g13733_MAGBIO Magnolia biondii HOM05D003847 ORTHO05D011443 2.4e-06 58.5 41 70.7


User provided reference genes

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