Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0293 Papaver somniferum HOM05D004934 ORTHO05D005924 3.2e-46 188.3 117 100.0
PSO339G6001 Papaver somniferum HOM05D004934 ORTHO05D005924 4.2e-46 188.0 117 99.1
Aqoxy4G02760 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 3.6e-29 131.7 112 59.8
GSVIVG01036114001 Vitis vinifera HOM05D004934 ORTHO05D005924 5.2e-28 127.9 114 60.5
Nn2g14177 Nelumbo nucifera HOM05D004934 ORTHO05D005924 2.6e-27 125.6 111 60.4
Hma1.2p1_0587F.1_g184270 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 5.8e-27 124.4 111 60.4
Hund18761 Selenicereus undatus HOM05D004934 ORTHO05D005924 1.7e-26 122.9 111 58.6
TAR633G0561 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.7e-26 122.9 111 60.4
Dinv42546 Davidia involucrata HOM05D004934 ORTHO05D005924 2.2e-26 122.5 111 59.5
Actinidia35468 Actinidia chinensis HOM05D004934 ORTHO05D005924 2.4e-25 119.0 117 55.6
AUR62036196 Chenopodium quinoa HOM05D004934 ORTHO05D005924 4.1e-25 118.2 116 56.9
Atru.chr3.3218 Acer truncatum HOM05D004934 ORTHO05D005924 1.6e-24 116.3 114 65.8
AUR62009749 Chenopodium quinoa HOM05D004934 ORTHO05D005924 2.0e-24 115.9 112 57.1
PGR102G3359 Punica granatum HOM05D004934 ORTHO05D005924 3.5e-24 115.2 120 56.7
unitig_27.g25034 Utricularia gibba HOM05D004934 ORTHO05D005924 3.5e-24 115.2 112 56.2
Nitab4.5_0000227g0280 Nicotiana tabacum HOM05D004934 ORTHO05D005924 6.0e-24 114.4 117 55.6
Peaxi162Scf00040g00023 Petunia axillaris HOM05D004934 ORTHO05D005924 6.0e-24 114.4 111 54.1
EL10Ac7g15830 Beta vulgaris HOM05D004934 ORTHO05D005924 7.8e-24 114.0 116 56.9
CANSAT54G1198 Cannabis sativa HOM05D004934 ORTHO05D005924 7.8e-24 114.0 127 53.5
Nitab4.5_0002914g0100 Nicotiana tabacum HOM05D004934 ORTHO05D005924 7.8e-24 114.0 117 55.6
Dinv22836 Davidia involucrata HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 55.9
Solyc11g068510.2 Solanum lycopersicum HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 55.9
Sopen11g027220 Solanum pennellii HOM05D004934 ORTHO05D005924 1.0e-23 113.6 111 55.9
CiPaw.14G099500 Carya illinoinensis HOM05D004934 ORTHO05D005924 1.7e-23 112.8 116 55.2
Migut.N02487 Erythranthe guttata HOM05D004934 ORTHO05D005924 1.7e-23 112.8 115 57.4
ATR0609G030 Amborella trichopoda HOM05D004934 ORTHO05D005924 2.3e-23 112.5 113 53.1
FvH4_5g26820 Fragaria vesca HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 52.9
FAN04G2654 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 52.9
FAN13G2036 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 119 52.9
Lsat_1_v5_gn_6_38900 Lactuca sativa HOM05D004934 ORTHO05D005924 2.3e-23 112.5 117 51.3
Zm00001eb369670 Zea mays HOM05D004934 ORTHO05D005924 2.3e-23 112.5 114 56.1
Cfa010007 Carpinus fangiana HOM05D004934 ORTHO05D005924 3.0e-23 112.1 125 50.4
Eucgr.B03844 Eucalyptus grandis HOM05D004934 ORTHO05D005924 3.0e-23 112.1 111 54.1
Nitab4.5_0000755g0070 Nicotiana tabacum HOM05D004934 ORTHO05D005924 3.0e-23 112.1 114 56.1
PGSC0003DMG400026356 Solanum tuberosum HOM05D004934 ORTHO05D005924 3.0e-23 112.1 111 55.0
Zm00001eb151060 Zea mays HOM05D004934 ORTHO05D005924 3.0e-23 112.1 114 54.4
Gohir.D08G015900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 5.0e-23 111.3 119 52.1
Nitab4.5_0012586g0010 Nicotiana tabacum HOM05D004934 ORTHO05D005924 5.0e-23 111.3 114 56.1
TWI31G0143 Tripterygium wilfordii HOM05D004934 ORTHO05D005924 5.0e-23 111.3 115 51.3
QL01p012137 Quercus lobata HOM05D004934 ORTHO05D005924 8.6e-23 110.5 118 60.2
RcHm_v2.0_Chr5g0045641 Rosa chinensis HOM05D004934 ORTHO05D005924 1.1e-22 110.2 119 51.3
vmacro14353 Vaccinium macrocarpon HOM05D004934 ORTHO05D005924 1.1e-22 110.2 111 52.3
Ciclev10029605m.g Citrus clementina HOM05D004934 ORTHO05D005924 1.9e-22 109.4 114 50.9
TAR636G0935 Trochodendron aralioides HOM05D004934 ORTHO05D005924 1.9e-22 109.4 111 51.4
Gorai.004G010200 Gossypium raimondii HOM05D004934 ORTHO05D005924 2.5e-22 109.0 119 50.4
Prupe.6G131900 Prunus persica HOM05D004934 ORTHO05D005924 2.5e-22 109.0 117 54.7
Aa31LG5G8260 Aethionema arabicum HOM05D004934 ORTHO05D005924 3.3e-22 108.6 116 60.3
Sc06g0008770 Simmondsia chinensis HOM05D004934 ORTHO05D005924 3.3e-22 108.6 113 53.1
AT2G27730 Arabidopsis thaliana HOM05D004934 ORTHO05D005924 5.6e-22 107.8 116 58.6
Cc01_g09040 Coffea canephora HOM05D004934 ORTHO05D005924 7.3e-22 107.5 112 53.6
Lj3g0027260 Lotus japonicus HOM05D004934 ORTHO05D005924 7.3e-22 107.5 116 49.1
Sed0020870 Sechium edule HOM05D004934 ORTHO05D005924 7.3e-22 107.5 111 55.9
Ca_19413_v3 Cicer arietinum L. HOM05D004934 ORTHO05D005924 9.5e-22 107.1 117 53.8
THA.LOC104800543 Tarenaya hassleriana HOM05D004934 ORTHO05D005924 9.5e-22 107.1 121 51.2
Gohir.A08G005600 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.2e-21 106.7 119 49.6
CAN.G1524.5 Capsicum annuum HOM05D004934 ORTHO05D005924 1.6e-21 106.3 113 51.3
Thecc.09G281300 Theobroma cacao HOM05D004934 ORTHO05D005924 1.6e-21 106.3 118 49.2
Glyma.11G182300 Glycine max HOM05D004934 ORTHO05D005924 2.1e-21 105.9 117 52.1
Duzib168G1921 Durio zibethinus HOM05D004934 ORTHO05D005924 2.8e-21 105.5 118 50.8
MD03G1147400 Malus domestica HOM05D004934 ORTHO05D005924 2.8e-21 105.5 112 60.7
AL4G22570 Arabidopsis lyrata HOM05D004934 ORTHO05D005924 3.6e-21 105.1 116 56.0
Medtr4g052910 Medicago truncatula HOM05D004934 ORTHO05D005924 3.6e-21 105.1 119 51.3
Peaxi162Scf00757g00422 Petunia axillaris HOM05D004934 ORTHO05D005924 4.7e-21 104.8 118 55.1
Phvul.011G095100 Phaseolus vulgaris HOM05D004934 ORTHO05D005924 4.7e-21 104.8 116 51.7
Sp4g10520 Schrenkiella parvula HOM05D004934 ORTHO05D005924 4.7e-21 104.8 117 52.1
CsaV3_1G014900 Cucumis sativus L. HOM05D004934 ORTHO05D005924 6.2e-21 104.4 117 54.7
Glyma.12G090500 Glycine max HOM05D004934 ORTHO05D005924 6.2e-21 104.4 117 52.1
Potri.009G163100 Populus trichocarpa HOM05D004934 ORTHO05D005924 6.2e-21 104.4 112 50.9
HanXRQChr13g0397481 Helianthus annuus HOM05D004934 ORTHO05D005924 8.0e-21 104.0 112 52.7
Psat7g187720 Pisum sativum HOM05D004934 ORTHO05D005924 8.0e-21 104.0 119 59.7
CSS0038235 Camellia sinensis var. sinensis HOM05D004934 ORTHO05D005924 1.1e-20 103.6 103 58.3
Gohir.A09G096200 Gossypium hirsutum HOM05D004934 ORTHO05D005924 1.1e-20 103.6 114 53.5
Lalb_Chr03g0028151 Lupinus albus HOM05D004934 ORTHO05D005924 1.1e-20 103.6 116 53.4
TPR.G17236 Trifolium pratense HOM05D004934 ORTHO05D005924 1.1e-20 103.6 116 51.7
VMungo1127G1656 Vigna mungo HOM05D004934 ORTHO05D005924 1.1e-20 103.6 116 50.0
BcaB02g10110 Brassica carinata HOM05D004934 ORTHO05D005924 1.4e-20 103.2 117 56.4
MSTRG.17705 Avicennia marina HOM05D004934 ORTHO05D005924 1.8e-20 102.8 113 50.4
Duzib170G0221 Durio zibethinus HOM05D004934 ORTHO05D005924 1.8e-20 102.8 119 56.3
Sabra09G0127300 Salix brachista HOM05D004934 ORTHO05D005924 1.8e-20 102.8 110 53.6
ECA233G4139 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.3e-20 102.4 112 53.6
Gohir.D09G095900 Gossypium hirsutum HOM05D004934 ORTHO05D005924 2.3e-20 102.4 114 52.6
MD11G1166100 Malus domestica HOM05D004934 ORTHO05D005924 2.3e-20 102.4 124 49.2
BcaC02g08235 Brassica carinata HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.0
A07p18350 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 116 50.9
C04p56900 Brassica napus HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.0
BolC4t27225H Brassica oleracea HOM05D004934 ORTHO05D005924 4.0e-20 101.7 117 53.0
Manes.04G003100 Manihot esculenta HOM05D004934 ORTHO05D005924 4.0e-20 101.7 116 51.7
arahy.Tifrunner.gnm1.ann1.Q13MWU Arachis hypogaea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 119 48.7
arahy.Tifrunner.gnm1.ann1.Q2H7V9 Arachis hypogaea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 119 48.7
BcaC02g10898 Brassica carinata HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 55.2
C04p23930 Brassica napus HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 55.2
BolC4t23886H Brassica oleracea HOM05D004934 ORTHO05D005924 5.2e-20 101.3 116 55.2
BcaB06g28164 Brassica carinata HOM05D004934 ORTHO05D005924 8.9e-20 100.5 118 51.7
CARHR120400 Cardamine hirsuta HOM05D004934 ORTHO05D005924 8.9e-20 100.5 115 51.3
Lalb_Chr01g0004881 Lupinus albus HOM05D004934 ORTHO05D005924 8.9e-20 100.5 119 50.4
BraA07t29551Z Brassica rapa HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 58.1
ClCG01G011970 Citrullus lanatus HOM05D004934 ORTHO05D005924 1.5e-19 99.8 117 51.3
Oeu031471.1 Olea europaea HOM05D004934 ORTHO05D005924 1.5e-19 99.8 119 49.6
MSTRG.12371 Avicennia marina HOM05D004934 ORTHO05D005924 2.6e-19 99.0 119 50.4
Carub.0004s0847 Capsella rubella HOM05D004934 ORTHO05D005924 2.6e-19 99.0 116 52.6
A04p21090 Brassica napus HOM05D004934 ORTHO05D005924 3.4e-19 98.6 115 52.2
BraA04t17678Z Brassica rapa HOM05D004934 ORTHO05D005924 3.4e-19 98.6 115 52.2
CDE12G0371 Ceratophyllum demersum HOM05D004622 ORTHO05D005431 3.4e-19 98.6 112 49.1
Lsat_1_v5_gn_2_59421 Lactuca sativa HOM05D004934 ORTHO05D005924 4.4e-19 98.2 112 54.5
HanXRQChr11g0324151 Helianthus annuus HOM05D004934 ORTHO05D005924 1.7e-18 96.3 118 57.6
RcHm_v2.0_Chr5g0046361 Rosa chinensis HOM05D004934 ORTHO05D005924 1.7e-18 96.3 127 45.7
Potri.004G201700 Populus trichocarpa HOM05D004934 ORTHO05D005924 2.9e-18 95.5 116 50.9
Oeu035567.1 Olea europaea HOM05D004934 ORTHO05D005924 4.9e-18 94.7 119 60.5
Sabra04G0136300 Salix brachista HOM05D004934 ORTHO05D005924 8.3e-18 94.0 120 50.0
Thhalv10017451m.g Eutrema salsugineum HOM05D004934 ORTHO05D005924 1.1e-17 93.6 115 57.4
Aqoxy2G01124 Aquilegia oxysepala HOM05D004934 ORTHO05D005924 1.9e-17 92.8 104 53.8
CDE04G1608 Ceratophyllum demersum HOM05D004934 ORTHO05D005924 3.2e-17 92.0 121 45.5
Rhsim13G0112500 Rhododendron simsii HOM05D004934 ORTHO05D005924 6.0e-16 87.8 154 39.6
BcaC02g10901 Brassica carinata HOM05D004934 ORTHO05D005924 7.8e-16 87.4 104 56.7
Os08g0559000 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.9e-14 82.8 117 47.9
ECA238G4733 Erigeron canadensis HOM05D004934 ORTHO05D005924 2.5e-14 82.4 115 55.7
SGA_v2.0_scaffold177G39414 Striga asiatica HOM05D004934 ORTHO05D005924 3.3e-14 82.0 114 46.5
SGA_v2.0_scaffold295G47520 Striga asiatica HOM05D004934 ORTHO05D005924 5.6e-14 81.3 111 41.4
PSO384G4162 Papaver somniferum HOM05D004934 ORTHO05D005924 1.2e-13 80.1 110 46.4
DCAR_030570 Daucus carota HOM05D004934 ORTHO05D005924 2.1e-13 79.3 65 70.8
SalBow3G2207 Salvia bowleyana HOM05D004934 ORTHO05D005924 2.8e-13 79.0 116 46.6
FAN11G2484 Fragaria x ananassa HOM05D004934 ORTHO05D005924 3.6e-13 78.6 115 44.3
FvH4_3g25100 Fragaria vesca HOM05D004934 ORTHO05D005924 6.2e-13 77.8 115 44.3
Zm00001eb343400 Zea mays HOM05D004934 ORTHO05D005924 8.1e-13 77.4 82 52.4
PSO339G2388 Papaver somniferum HOM05D004934 ORTHO05D005924 5.2e-12 74.7 110 43.6
Pp3c1_22500 Physcomitrium patens HOM05D004934 ORTHO05D005924 5.2e-12 74.7 116 43.1
Nn6g34871 Nelumbo nucifera HOM05D004934 ORTHO05D005924 6.8e-12 74.3 47 78.7
Zm00001eb416000 Zea mays HOM05D004934 ORTHO05D005924 1.2e-11 73.6 82 51.2
DCAR_010342 Daucus carota HOM05D004934 ORTHO05D005924 1.7e-10 69.7 84 44.0
Pp3c14_2790 Physcomitrium patens HOM05D004934 ORTHO05D005924 1.1e-09 67.0 114 48.2
MBI05_g05303_MAGBIO Magnolia biondii HOM05D004934 ORTHO05D005924 1.4e-09 66.6 79 44.3
Os09g0568900 Oryza sativa ssp. japonica HOM05D004934 ORTHO05D005924 1.9e-09 66.2 78 48.7
AagrBONN_evm.TU.Sc2ySwM_228.2259 Anthoceros agrestis HOM05D004934 ORTHO05D005924 7.8e-08 60.8 128 38.3
HPP92_003219 Vanilla planifolia HOM05D004934 ORTHO05D005924 1.0e-07 60.5 87 41.4
FAN25G2937 Fragaria x ananassa HOM05D004934 ORTHO05D005924 2.3e-07 59.3 82 42.7
MELO3C004698.2 Cucumis melo HOM05D004934 ORTHO05D005924 2.5e-06 55.8 99 50.5
SEGI_07969 Sequoiadendron giganteum HOM05D004934 ORTHO05D005924 3.3e-06 55.5 48 64.6
CiPaw.14G033800 Carya illinoinensis HOM05D007506 ORTHO05D008409 4.3e-06 55.1 46 69.6
Aqoxy7G00781 Aquilegia oxysepala HOM05D007506 ORTHO05D008409 7.3e-06 54.3 39 74.4
Cpa.g.sc32.38 Carica papaya HOM05D004934 ORTHO05D005924 7.3e-06 54.3 34 73.5
Hma1.2p1_0587F.1_g184260 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.3e-06 54.3 33 69.7
Hma1.2p1_3516F.1_g336514 Hydrangea macrophylla HOM05D004934 ORTHO05D005924 7.3e-06 54.3 33 69.7


User provided reference genes

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