Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0209 Papaver somniferum HOM05D005754 ORTHO05D006843 1.0e-160 570.1 304 100.0
PSO339G5576 Papaver somniferum HOM05D005754 ORTHO05D006843 2.0e-156 555.8 304 97.7
TAR636G0743 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.1e-133 480.3 304 83.2
TAR636G1551 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.1e-133 480.3 304 83.2
TAR633G0926 Trochodendron aralioides HOM05D005754 ORTHO05D006843 1.5e-130 469.9 304 82.2
Aqoxy2G00957 Aquilegia oxysepala HOM05D005754 ORTHO05D006843 4.2e-130 468.4 304 82.6
Nn2g13637 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.2e-129 466.8 293 84.0
Nn2g13638 Nelumbo nucifera HOM05D005754 ORTHO05D006843 1.2e-129 466.8 293 84.0
Duzib151G1210 Durio zibethinus HOM05D005754 ORTHO05D006843 5.7e-127 458.0 304 78.6
QL03p068630 Quercus lobata HOM05D005754 ORTHO05D006843 8.2e-126 454.1 303 77.9
QL05p030092 Quercus lobata HOM05D005754 ORTHO05D006843 8.2e-126 454.1 303 77.9
CiPaw.09G178700 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.6e-124 449.9 304 77.3
Haze_05263 Corylus avellana HOM05D005754 ORTHO05D006843 3.5e-124 448.7 303 79.2
Cfa001129 Carpinus fangiana HOM05D005754 ORTHO05D006843 5.9e-124 448.0 304 78.9
Manes.16G050000 Manihot esculenta HOM05D005754 ORTHO05D006843 7.7e-124 447.6 304 77.0
CiPaw.09G178800 Carya illinoinensis HOM05D005754 ORTHO05D006843 1.3e-123 446.8 304 76.6
MD05G1011700 Malus domestica HOM05D005754 ORTHO05D006843 1.7e-123 446.4 304 78.0
Thecc.04G266000 Theobroma cacao HOM05D005754 ORTHO05D006843 2.9e-123 445.7 304 76.6
COL.COLO4_15977 Corchorus olitorius HOM05D005754 ORTHO05D006843 6.5e-123 444.5 304 76.6
Medtr3g077990 Medicago truncatula HOM05D005754 ORTHO05D006843 1.5e-122 443.4 302 76.2
Ciclev10016094m.g Citrus clementina HOM05D005754 ORTHO05D006843 2.5e-122 442.6 295 78.6
CSS0030019 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 3.2e-122 442.2 296 78.4
TPR.G24478 Trifolium pratense HOM05D005754 ORTHO05D006843 3.2e-122 442.2 295 77.6
Ca_04011_v3 Cicer arietinum L. HOM05D005754 ORTHO05D006843 1.2e-121 440.3 295 78.3
Lalb_Chr17g0344101 Lupinus albus HOM05D005754 ORTHO05D006843 2.1e-121 439.5 295 78.3
MSTRG.26599 Avicennia marina HOM05D005754 ORTHO05D006843 2.7e-121 439.1 295 78.0
Glyma.12G019600 Glycine max HOM05D005754 ORTHO05D006843 2.7e-121 439.1 295 78.3
Gorai.006G250700 Gossypium raimondii HOM05D005754 ORTHO05D006843 2.7e-121 439.1 304 75.3
Gohir.D09G228000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.6e-121 438.7 304 75.3
TWI53G2110 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.4e-120 436.8 295 78.0
TWI74G1242 Tripterygium wilfordii HOM05D005754 ORTHO05D006843 1.8e-120 436.4 295 77.6
Gohir.A09G227000 Gossypium hirsutum HOM05D005754 ORTHO05D006843 3.0e-120 435.6 304 75.0
SalBow5G0150 Salvia bowleyana HOM05D005754 ORTHO05D006843 3.0e-120 435.6 304 75.0
TPR.G21775 Trifolium pratense HOM05D005754 ORTHO05D006843 5.2e-120 434.9 295 76.6
VMungo1127G0046 Vigna mungo HOM05D005754 ORTHO05D006843 5.2e-120 434.9 304 76.0
Rhsim08G0028000 Rhododendron simsii HOM05D005754 ORTHO05D006843 8.8e-120 434.1 304 75.3
Potri.001G160600 Populus trichocarpa HOM05D005754 ORTHO05D006843 1.5e-119 433.3 304 75.0
Prupe.8G016600 Prunus persica HOM05D005754 ORTHO05D006843 1.5e-119 433.3 304 76.3
Cpa.g.sc17.6 Carica papaya HOM05D005754 ORTHO05D006843 2.0e-119 433.0 304 75.7
vmacro03555 Vaccinium macrocarpon HOM05D005754 ORTHO05D006843 2.6e-119 432.6 304 74.7
ATR0618G331 Amborella trichopoda HOM05D005754 ORTHO05D006843 3.4e-119 432.2 295 76.3
Zm00001eb185080 Zea mays HOM05D005754 ORTHO05D006843 4.4e-119 431.8 292 78.4
THA.LOC104798565 Tarenaya hassleriana HOM05D005754 ORTHO05D006843 5.7e-119 431.4 305 76.1
Atru.chr10.361 Acer truncatum HOM05D005754 ORTHO05D006843 9.7e-119 430.6 290 77.9
CARHR129140 Cardamine hirsuta HOM05D005754 ORTHO05D006843 9.7e-119 430.6 293 78.2
Cc09_g05360 Coffea canephora HOM05D005754 ORTHO05D006843 9.7e-119 430.6 302 73.2
Os02g0622200 Oryza sativa ssp. japonica HOM05D005754 ORTHO05D006843 9.7e-119 430.6 293 76.5
Sabra03G0045000 Salix brachista HOM05D005754 ORTHO05D006843 1.7e-118 429.9 304 74.3
Potri.003G074300 Populus trichocarpa HOM05D005754 ORTHO05D006843 2.2e-118 429.5 301 74.1
arahy.Tifrunner.gnm1.ann1.RJAX1V Arachis hypogaea HOM05D005754 ORTHO05D006843 4.8e-118 428.3 293 77.8
FvH4_2g14913 Fragaria vesca HOM05D005754 ORTHO05D006843 1.8e-117 426.4 291 78.7
RcHm_v2.0_Chr6g0277521 Rosa chinensis HOM05D005754 ORTHO05D006843 2.4e-117 426.0 299 76.6
CAN.G809.72 Capsicum annuum HOM05D005754 ORTHO05D006843 3.1e-117 425.6 304 72.7
Nitab4.5_0006976g0040 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.1e-117 425.6 295 74.6
Rhsim02G0117500 Rhododendron simsii HOM05D005754 ORTHO05D006843 3.1e-117 425.6 304 73.7
arahy.Tifrunner.gnm1.ann1.9I9HCV Arachis hypogaea HOM05D005754 ORTHO05D006843 5.3e-117 424.9 293 77.5
Nitab4.5_0006933g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 9.1e-117 424.1 295 74.2
AT2G34980 Arabidopsis thaliana HOM05D005754 ORTHO05D006843 1.6e-116 423.3 292 76.7
Solyc02g081610.3 Solanum lycopersicum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 295 73.9
Sopen02g026230 Solanum pennellii HOM05D005754 ORTHO05D006843 1.6e-116 423.3 295 73.9
PGSC0003DMG400017743 Solanum tuberosum HOM05D005754 ORTHO05D006843 1.6e-116 423.3 295 73.9
Sed0006244 Sechium edule HOM05D005754 ORTHO05D006843 5.9e-116 421.4 304 73.4
Aa31LG9G16220 Aethionema arabicum HOM05D005754 ORTHO05D006843 7.7e-116 421.0 296 76.7
MELO3C021702.2 Cucumis melo HOM05D005754 ORTHO05D006843 1.0e-115 420.6 293 74.7
Oeu063995.1 Olea europaea HOM05D005754 ORTHO05D006843 1.3e-115 420.2 295 75.6
Prupe.7G012900 Prunus persica HOM05D005754 ORTHO05D006843 2.2e-115 419.5 304 73.4
ClCG01G009960 Citrullus lanatus HOM05D005754 ORTHO05D006843 3.8e-115 418.7 293 75.1
Thhalv10016993m.g Eutrema salsugineum HOM05D005754 ORTHO05D006843 8.5e-115 417.5 305 74.4
PGSC0003DMG400024410 Solanum tuberosum HOM05D005754 ORTHO05D006843 8.5e-115 417.5 295 73.2
Lj3g0027197 Lotus japonicus HOM05D005754 ORTHO05D006843 1.1e-114 417.2 295 74.6
DCAR_002228 Daucus carota HOM05D005754 ORTHO05D006843 1.5e-114 416.8 293 76.1
BraA05t20016Z Brassica rapa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 293 75.1
FAN24G3472 Fragaria x ananassa HOM05D005754 ORTHO05D006843 3.2e-114 415.6 291 77.0
FvH4_1g22930 Fragaria vesca HOM05D005754 ORTHO05D006843 4.2e-114 415.2 289 77.5
PGR142G3917 Punica granatum HOM05D005754 ORTHO05D006843 9.4e-114 414.1 295 74.2
RcHm_v2.0_Chr3g0496061 Rosa chinensis HOM05D005754 ORTHO05D006843 3.6e-113 412.1 304 71.7
FAN28G1898 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.1e-113 411.4 304 72.4
C04p13810 Brassica napus HOM05D005754 ORTHO05D006843 8.0e-113 411.0 293 74.4
BolC4t22971H Brassica oleracea HOM05D005754 ORTHO05D006843 8.0e-113 411.0 293 74.4
BcaB02g09492 Brassica carinata HOM05D005754 ORTHO05D006843 1.0e-112 410.6 292 74.3
MD12G1011000 Malus domestica HOM05D005754 ORTHO05D006843 1.0e-112 410.6 304 72.4
HanXRQChr04g0115041 Helianthus annuus HOM05D005754 ORTHO05D006843 2.3e-112 409.5 281 76.2
BcaB02g09491 Brassica carinata HOM05D005754 ORTHO05D006843 3.0e-112 409.1 306 72.9
Migut.H00867 Erythranthe guttata HOM05D005754 ORTHO05D006843 4.0e-112 408.7 291 75.9
Sc15g0000060 Simmondsia chinensis HOM05D005754 ORTHO05D006843 5.2e-112 408.3 290 73.8
Lj2P343T23 Lonicera japonica HOM05D005754 ORTHO05D006843 9.8e-111 404.1 281 76.5
A05p10720 Brassica napus HOM05D005754 ORTHO05D006843 1.3e-110 403.7 293 73.0
AL4G30990 Arabidopsis lyrata HOM05D005754 ORTHO05D006843 8.3e-110 401.0 293 74.4
Dinv31187 Davidia involucrata HOM05D005754 ORTHO05D006843 5.4e-109 398.3 295 72.9
Ah.01g016960 Amaranthus hybridus HOM05D005754 ORTHO05D006843 7.0e-109 397.9 294 72.1
BcaC02g07743 Brassica carinata HOM05D004145 ORTHO05D006843 9.1e-109 397.5 304 71.1
Carub.0004s1667 Capsella rubella HOM05D005754 ORTHO05D006843 9.1e-109 397.5 293 73.0
AUR62038334 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.0e-107 394.0 299 70.2
unitig_747.g21312 Utricularia gibba HOM05D005754 ORTHO05D006843 8.6e-107 391.0 295 68.1
EL10Ac9g21106 Beta vulgaris HOM05D005754 ORTHO05D006843 1.1e-106 390.6 296 70.9
FAN19G0110 Fragaria x ananassa HOM05D005754 ORTHO05D006843 1.1e-106 390.6 281 76.2
Lsat_1_v5_gn_5_184141 Lactuca sativa HOM05D005754 ORTHO05D006843 1.5e-106 390.2 298 70.1
SEGI_24883 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 1.9e-106 389.8 302 66.6
SGA_v2.0_scaffold184G40027 Striga asiatica HOM05D005754 ORTHO05D006843 2.3e-104 382.9 305 68.2
Eucgr.G02638 Eucalyptus grandis HOM05D005754 ORTHO05D006843 3.7e-102 375.6 295 68.5
FAN26G0490 Fragaria x ananassa HOM05D005754 ORTHO05D006843 4.9e-102 375.2 281 74.0
HPP92_025694 Vanilla planifolia HOM05D005754 ORTHO05D006843 9.2e-101 370.9 290 69.0
AUR62023912 Chenopodium quinoa HOM05D005754 ORTHO05D006843 1.0e-99 367.5 281 69.8
SHI51133 Sapria himalayana HOM05D005754 ORTHO05D006843 2.1e-97 359.8 292 65.8
Lsat_1_v5_gn_2_60361 Lactuca sativa HOM05D005754 ORTHO05D006843 1.8e-96 356.7 273 71.4
SHI47983 Sapria himalayana HOM05D005754 ORTHO05D006843 1.3e-83 313.9 272 64.7
Pp3c1_31960 Physcomitrium patens HOM05D005754 ORTHO05D006843 1.2e-81 307.4 306 55.9
Psat4g130160 Pisum sativum HOM05D005754 ORTHO05D006843 1.2e-79 300.8 220 72.3
QL06p000087 Quercus lobata HOM05D005754 ORTHO05D006843 6.0e-76 288.5 295 57.3
Phvul.011G021750 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 3.9e-75 285.8 194 78.4
FAN27G3249 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.8e-72 275.0 194 76.8
AagrBONN_evm.TU.Sc2ySwM_368.2727 Anthoceros agrestis HOM05D005754 ORTHO05D006843 3.2e-69 266.2 295 51.5
AUR62040653 Chenopodium quinoa HOM05D002008 ORTHO05D006843 4.3e-66 255.8 195 70.8
SMO174G0201 Selaginella moellendorffii HOM05D005754 ORTHO05D006843 5.8e-63 245.4 291 48.8
Atru.chr10.357 Acer truncatum HOM05D005754 ORTHO05D006843 9.9e-63 244.6 163 74.8
GSVIVG01012143001 Vitis vinifera HOM05D005754 ORTHO05D006843 3.8e-62 242.7 159 80.5
SEGI_06024 Sequoiadendron giganteum HOM05D005754 ORTHO05D006843 8.4e-62 241.5 194 63.4
Mapoly0096s0067 Marchantia polymorpha HOM05D005754 ORTHO05D006843 2.2e-54 216.9 339 42.8
ClCG01G008540 Citrullus lanatus HOM05D005754 ORTHO05D006843 2.7e-52 209.9 292 47.3
Phvul.011G022000 Phaseolus vulgaris HOM05D005754 ORTHO05D006843 5.1e-51 205.7 139 77.7
ECA238G2846 Erigeron canadensis HOM05D005754 ORTHO05D006843 3.4e-47 193.0 132 72.7
Psat4g130000 Pisum sativum HOM05D005754 ORTHO05D006843 9.3e-45 184.9 235 51.1
Peaxi162Scf00048g00146 Petunia axillaris HOM05D005754 ORTHO05D006843 2.2e-38 163.7 202 48.0
Psat7g123440 Pisum sativum HOM05D005754 ORTHO05D006843 4.2e-37 159.5 186 51.6
TPR.G29739 Trifolium pratense HOM05D005754 ORTHO05D006843 4.2e-37 159.5 116 75.0
Sp2g07050 Schrenkiella parvula HOM05D005754 ORTHO05D006843 2.7e-36 156.8 111 73.9
CSS0033773 Camellia sinensis var. sinensis HOM05D005754 ORTHO05D006843 1.1e-32 144.8 169 52.7
CBR_g21245 Chara braunii HOM05D005754 ORTHO05D006843 2.4e-32 143.7 182 44.0
Nitab4.5_0011913g0010 Nicotiana tabacum HOM05D005754 ORTHO05D006843 3.8e-30 136.3 90 72.2
FAN15G0194 Fragaria x ananassa HOM05D005754 ORTHO05D006843 6.5e-30 135.6 97 77.3
CARHR278340 Cardamine hirsuta HOM05D005754 ORTHO05D006843 4.7e-20 102.8 86 64.0
Cre02.g109850 Chlamydomonas reinhardtii HOM05D005754 ORTHO05D006843 3.3e-18 96.7 284 29.2
Medtr3g464840 Medicago truncatula HOM05D000092 ORTHO05D005910 2.2e-17 94.0 85 69.4
MCO15G034 Micromonas commoda HOM05D005754 ORTHO05D006843 1.4e-16 91.3 302 27.8
BcaC02g11579 Brassica carinata HOM05D005754 ORTHO05D006843 5.3e-16 89.4 60 73.3
Cfa024382 Carpinus fangiana HOM05D005754 ORTHO05D006843 4.5e-15 86.3 172 37.2
Hund00745 Selenicereus undatus HOM05D005754 ORTHO05D006843 1.7e-14 84.3 49 79.6
CsaV3_1G018460 Cucumis sativus L. HOM05D001859 ORTHO05D001836 8.5e-14 82.0 43 81.4
Psat4g159400 Pisum sativum HOM05D003463 ORTHO05D004846 4.0e-11 73.2 150 37.3
BcaB06g28814 Brassica carinata HOM05D005754 ORTHO05D006843 1.2e-07 61.6 56 55.4


User provided reference genes

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