Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0156 Papaver somniferum HOM05D006514 ORTHO05D008138 2.1e-38 161.8 77 100.0
PSO339G3417 Papaver somniferum HOM05D006514 ORTHO05D008138 4.0e-37 157.5 77 96.1
GSVIVG01037960001 Vitis vinifera HOM05D006514 ORTHO05D008138 3.7e-22 107.8 63 76.2
Nn1g05070 Nelumbo nucifera HOM05D006514 ORTHO05D008138 4.5e-20 100.9 53 83.0
PSO017G0544 Papaver somniferum HOM05D006514 ORTHO05D008138 1.7e-19 99.0 51 84.3
CDE04G3777 Ceratophyllum demersum HOM05D006514 ORTHO05D008138 2.9e-19 98.2 59 72.9
Ciclev10023245m.g Citrus clementina HOM05D006514 ORTHO05D008138 8.5e-19 96.7 57 71.9
MD03G1065900 Malus domestica HOM05D006514 ORTHO05D008138 8.5e-19 96.7 50 82.0
Migut.H00182 Erythranthe guttata HOM05D006514 ORTHO05D008138 1.1e-18 96.3 57 71.9
Dinv36061 Davidia involucrata HOM05D006514 ORTHO05D008138 1.9e-18 95.5 55 74.5
MD11G1070700 Malus domestica HOM05D006514 ORTHO05D008138 1.9e-18 95.5 50 82.0
Gohir.A03G078101 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.5e-18 95.1 55 74.5
Gohir.D02G094200 Gossypium hirsutum HOM05D006514 ORTHO05D008138 2.5e-18 95.1 55 72.7
Gorai.005G107100 Gossypium raimondii HOM05D006514 ORTHO05D008138 2.5e-18 95.1 55 72.7
RcHm_v2.0_Chr5g0070251 Rosa chinensis HOM05D006514 ORTHO05D008138 3.2e-18 94.7 55 72.7
Hma1.2p1_0203F.1_g086530 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 7.2e-18 93.6 50 80.0
Hma1.2p1_0023F.1_g014910 Hydrangea macrophylla HOM05D006514 ORTHO05D008138 1.2e-17 92.8 50 78.0
Rhsim08G0113100 Rhododendron simsii HOM05D006514 ORTHO05D008138 1.2e-17 92.8 53 77.4
Potri.002G263100 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.6e-17 92.4 55 70.9
Thecc.08G024100 Theobroma cacao HOM05D006514 ORTHO05D008138 1.6e-17 92.4 55 70.9
vmacro17857 Vaccinium macrocarpon HOM05D006514 ORTHO05D008138 1.6e-17 92.4 51 78.4
Zm00001eb368290 Zea mays HOM05D006514 ORTHO05D008138 1.6e-17 92.4 59 64.4
Duzib093G1568 Durio zibethinus HOM05D000207 ORTHO05D001482 2.1e-17 92.0 55 67.3
QL12p026537 Quercus lobata HOM05D006514 ORTHO05D008138 2.1e-17 92.0 50 80.0
QL12p026562 Quercus lobata HOM05D006514 ORTHO05D008138 2.1e-17 92.0 50 80.0
AL1G16530 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 2.7e-17 91.7 55 72.7
AT1G06515 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 2.7e-17 91.7 55 72.7
Carub.0001s0587 Capsella rubella HOM05D006514 ORTHO05D008138 2.7e-17 91.7 55 72.7
THA.LOC104800827 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 2.7e-17 91.7 55 72.7
Prupe.6G054600 Prunus persica HOM05D006514 ORTHO05D008138 3.6e-17 91.3 50 78.0
CiPaw.07G206900 Carya illinoinensis HOM05D006514 ORTHO05D008138 4.6e-17 90.9 50 76.0
Thhalv10009956m.g Eutrema salsugineum HOM05D006514 ORTHO05D008138 4.6e-17 90.9 55 72.7
Manes.05G162000 Manihot esculenta HOM05D006514 ORTHO05D008138 4.6e-17 90.9 55 72.7
PGSC0003DMG400015499 Solanum tuberosum HOM05D006514 ORTHO05D008138 4.6e-17 90.9 55 70.9
Migut.N00499 Erythranthe guttata HOM05D006514 ORTHO05D008138 6.1e-17 90.5 55 69.1
RcHm_v2.0_Chr7g0176991 Rosa chinensis HOM05D006514 ORTHO05D008138 6.1e-17 90.5 55 70.9
MSTRG.24295 Avicennia marina HOM05D006514 ORTHO05D008138 1.0e-16 89.7 50 76.0
Carub.0004s1216 Capsella rubella HOM05D006514 ORTHO05D008138 1.0e-16 89.7 55 69.1
Potri.001G000400 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.0e-16 89.7 55 69.1
Potri.002G263300 Populus trichocarpa HOM05D006514 ORTHO05D008138 1.0e-16 89.7 55 69.1
CiPaw.13G075100 Carya illinoinensis HOM05D006514 ORTHO05D008138 1.3e-16 89.4 55 70.9
AT2G30942 Arabidopsis thaliana HOM05D006514 ORTHO05D008138 1.8e-16 89.0 55 69.1
DCAR_025932 Daucus carota HOM05D006514 ORTHO05D008138 1.8e-16 89.0 66 59.1
unitig_85.g27236 Utricularia gibba HOM05D006514 ORTHO05D008138 1.8e-16 89.0 62 66.1
A04p23650 Brassica napus HOM05D006514 ORTHO05D008138 3.0e-16 88.2 49 75.5
BraA04t17890Z Brassica rapa HOM05D006514 ORTHO05D008138 3.0e-16 88.2 49 75.5
FAN16G2060 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.0e-16 88.2 51 72.5
CSS0043768 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 3.9e-16 87.8 55 72.7
Cc07_g09230 Coffea canephora HOM05D006514 ORTHO05D008138 3.9e-16 87.8 61 67.2
Duzib116G0168 Durio zibethinus HOM05D006514 ORTHO05D008138 3.9e-16 87.8 55 67.3
Os07g0446900 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 3.9e-16 87.8 60 65.0
SHI24607 Sapria himalayana HOM05D006514 ORTHO05D008138 3.9e-16 87.8 57 68.4
CARHR006120 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.1e-16 87.4 51 72.5
FvH4_3g38980 Fragaria vesca HOM05D006514 ORTHO05D008138 5.1e-16 87.4 50 74.0
FAN21G1628 Fragaria x ananassa HOM05D006514 ORTHO05D008138 5.1e-16 87.4 50 74.0
BcaB02g06800 Brassica carinata HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BcaC07g42061 Brassica carinata HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
A09p66940 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
A10p05150 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
C05p04760 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
C08p51170 Brassica napus HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BolC5t29247H Brassica oleracea HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BolC8t52644H Brassica oleracea HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BraA09t42029Z Brassica rapa HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BraA10t42782Z Brassica rapa HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
Duzib041G0253 Durio zibethinus HOM05D006514 ORTHO05D008138 6.7e-16 87.0 50 70.0
Oeu025460.1 Olea europaea HOM05D006514 ORTHO05D008138 6.7e-16 87.0 51 74.5
BcaB06g28396 Brassica carinata HOM05D006514 ORTHO05D008138 8.7e-16 86.7 45 80.0
BcaB06g28465 Brassica carinata HOM05D006514 ORTHO05D008138 8.7e-16 86.7 45 80.0
C04p60100 Brassica napus HOM05D006514 ORTHO05D008138 8.7e-16 86.7 45 80.0
BolC4t27513H Brassica oleracea HOM05D006514 ORTHO05D008138 8.7e-16 86.7 45 80.0
PGR004G0716 Punica granatum HOM05D006514 ORTHO05D008138 8.7e-16 86.7 50 74.0
AL4G25910 Arabidopsis lyrata HOM05D006514 ORTHO05D008138 1.1e-15 86.3 45 77.8
TWI12G0206 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 1.1e-15 86.3 55 70.9
SalBow8G0801 Salvia bowleyana HOM05D006514 ORTHO05D008138 1.5e-15 85.9 45 82.2
THA.LOC104815841 Tarenaya hassleriana HOM05D006514 ORTHO05D008138 1.5e-15 85.9 45 82.2
Cc10_g03090 Coffea canephora HOM05D006514 ORTHO05D008138 2.5e-15 85.1 50 74.0
CAN.G358.121 Capsicum annuum HOM05D006514 ORTHO05D008138 3.3e-15 84.7 51 70.6
CsaV3_5G038690 Cucumis sativus L. HOM05D006514 ORTHO05D008138 3.3e-15 84.7 45 84.4
Gohir.D01G105000 Gossypium hirsutum HOM05D006514 ORTHO05D008138 3.3e-15 84.7 50 72.0
Gorai.002G129000 Gossypium raimondii HOM05D006514 ORTHO05D008138 3.3e-15 84.7 50 72.0
Sed0005431 Sechium edule HOM05D006514 ORTHO05D008138 3.3e-15 84.7 55 69.1
TWI36G0631 Tripterygium wilfordii HOM05D006514 ORTHO05D008138 3.3e-15 84.7 50 72.0
Eucgr.F04183 Eucalyptus grandis HOM05D006514 ORTHO05D008138 5.7e-15 84.0 53 69.8
Oeu009866.1 Olea europaea HOM05D006514 ORTHO05D008138 5.7e-15 84.0 51 72.5
Gohir.A01G116600 Gossypium hirsutum HOM05D006514 ORTHO05D008138 7.4e-15 83.6 50 70.0
CANSAT01G0756 Cannabis sativa HOM05D006514 ORTHO05D008138 1.3e-14 82.8 47 74.5
TAR628G0909 Trochodendron aralioides HOM05D006514 ORTHO05D008138 4.8e-14 80.9 47 76.6
CARHR124460 Cardamine hirsuta HOM05D006514 ORTHO05D008138 5.3e-13 77.4 51 62.7
SEGI_00006 Sequoiadendron giganteum HOM05D006514 ORTHO05D008138 5.3e-13 77.4 46 76.1
Lalb_Chr13g0293771 Lupinus albus HOM05D006514 ORTHO05D008138 6.9e-13 77.0 55 61.8
arahy.Tifrunner.gnm1.ann1.0361F1 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.6e-12 75.1 55 63.6
arahy.Tifrunner.gnm1.ann1.TUTF01 Arachis hypogaea HOM05D006514 ORTHO05D008138 2.6e-12 75.1 55 63.6
arahy.Tifrunner.gnm1.ann1.40255N Arachis hypogaea HOM05D006514 ORTHO05D008138 3.4e-12 74.7 55 63.6
arahy.Tifrunner.gnm1.ann1.4217G9 Arachis hypogaea HOM05D006514 ORTHO05D008138 7.7e-12 73.6 39 82.1
FAN11G3963 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.2e-11 72.0 50 64.0
Lj4g0001345 Lotus japonicus HOM05D006514 ORTHO05D008138 2.9e-11 71.6 39 76.9
Os04g0518650 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 2.9e-11 71.6 56 60.7
Zm00001eb096700 Zea mays HOM05D007724 ORTHO05D009363 3.8e-11 71.2 60 50.0
Phvul.002G183600 Phaseolus vulgaris HOM05D006514 ORTHO05D008138 1.4e-10 69.3 45 71.1
Lalb_Chr11g0074141 Lupinus albus HOM05D006514 ORTHO05D008138 1.9e-10 68.9 39 76.9
ATR0733G176 Amborella trichopoda HOM05D006514 ORTHO05D008138 2.5e-10 68.6 44 70.5
FAN16G1919 Fragaria x ananassa HOM05D006514 ORTHO05D008138 3.2e-10 68.2 112 38.4
Glyma.05G140300 Glycine max HOM05D006514 ORTHO05D008138 3.2e-10 68.2 39 79.5
Glyma.08G095700 Glycine max HOM05D006514 ORTHO05D008138 4.2e-10 67.8 39 76.9
Lalb_Chr08g0232711 Lupinus albus HOM05D006514 ORTHO05D008138 5.5e-10 67.4 38 76.3
Aa31LG1G7590 Aethionema arabicum HOM05D006514 ORTHO05D008138 9.4e-10 66.6 86 41.9
Ca_07248_v3 Cicer arietinum L. HOM05D006514 ORTHO05D008138 9.4e-10 66.6 39 74.4
FAN11G3335 Fragaria x ananassa HOM05D006514 ORTHO05D008138 2.1e-09 65.5 45 66.7
CSS0047171 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.8e-08 62.4 34 79.4
FAN25G0650 Fragaria x ananassa HOM05D006514 ORTHO05D008138 1.8e-08 62.4 29 89.7
Ah.06g182360 Amaranthus hybridus HOM05D006514 ORTHO05D008138 1.5e-07 59.3 31 80.6
C04p41290 Brassica napus HOM05D006514 ORTHO05D008138 2.0e-07 58.9 29 79.3
Nitab4.5_0003410g0060 Nicotiana tabacum HOM05D006514 ORTHO05D008138 2.6e-07 58.5 28 92.9
Lsat_1_v5_gn_1_26540 Lactuca sativa HOM05D006514 ORTHO05D008138 5.7e-07 57.4 31 83.9
CSS0042829 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.7e-06 55.8 76 43.4
CSS0047355 Camellia sinensis var. sinensis HOM05D006514 ORTHO05D008138 1.7e-06 55.8 76 43.4
Medtr7g024350 Medicago truncatula HOM05D006514 ORTHO05D008138 1.7e-06 55.8 31 74.2
Os07g0446600 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 1.7e-06 55.8 31 77.4
Os07g0447200 Oryza sativa ssp. japonica HOM05D006514 ORTHO05D008138 8.2e-06 53.5 31 67.7


User provided reference genes

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