Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0074 Papaver somniferum HOM05D004776 ORTHO05D005777 0.0e+00 1119.0 576 100.0
PSO339G3038 Papaver somniferum HOM05D004776 ORTHO05D005777 5.1e-310 1067.0 577 95.1
PSO339G3219 Papaver somniferum HOM05D004776 ORTHO05D005777 5.3e-299 1030.4 587 91.5
PSO063G2354 Papaver somniferum HOM05D004776 ORTHO05D005777 1.3e-257 892.9 503 92.2
Nn2g11574 Nelumbo nucifera HOM05D004776 ORTHO05D005777 3.3e-224 781.9 576 70.7
TAR623G0387 Trochodendron aralioides HOM05D004776 ORTHO05D005777 1.6e-223 779.6 571 70.1
Aqoxy2G01783 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 1.1e-219 766.9 568 69.2
Hma1.2p1_0569F.1_g180290 Hydrangea macrophylla HOM05D004776 ORTHO05D005777 5.8e-205 718.0 569 65.4
QL01p015865 Quercus lobata HOM05D004776 ORTHO05D005777 2.2e-204 716.1 575 66.1
CSS0005795 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 1.1e-200 703.7 578 65.9
CSS0042525 Camellia sinensis var. sinensis HOM05D004776 ORTHO05D005777 5.6e-200 701.4 578 65.7
CiPaw.13G118600 Carya illinoinensis HOM05D004776 ORTHO05D005777 5.6e-200 701.4 569 65.6
GSVIVG01031509001 Vitis vinifera HOM05D004776 ORTHO05D005777 1.5e-197 693.3 570 65.3
MD11G1145200 Malus domestica HOM05D004776 ORTHO05D005777 2.6e-197 692.6 575 63.5
HanXRQChr11g0346181 Helianthus annuus HOM05D004776 ORTHO05D005777 3.4e-197 692.2 570 64.4
Ciclev10028099m.g Citrus clementina HOM05D004776 ORTHO05D005777 4.4e-197 691.8 569 64.9
CANSAT54G2950 Cannabis sativa HOM05D004776 ORTHO05D005777 2.9e-196 689.1 574 62.7
RcHm_v2.0_Chr2g0122071 Rosa chinensis HOM05D004776 ORTHO05D005777 1.2e-194 683.7 570 63.5
Lj3g0025221 Lotus japonicus HOM05D004776 ORTHO05D005777 1.0e-193 680.6 569 63.4
Thecc.09G348100 Theobroma cacao HOM05D004776 ORTHO05D005777 1.7e-193 679.9 572 63.1
TWI79G1687 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 1.7e-193 679.9 570 63.3
Prupe.6G108100 Prunus persica HOM05D004776 ORTHO05D005777 3.0e-193 679.1 579 62.5
Actinidia20436 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.5e-192 676.8 576 63.9
Phvul.005G131900 Phaseolus vulgaris HOM05D004776 ORTHO05D005777 1.5e-192 676.8 572 62.8
Manes.04G015500 Manihot esculenta HOM05D004776 ORTHO05D005777 1.9e-192 676.4 568 64.6
TWI31G0757 Tripterygium wilfordii HOM05D004776 ORTHO05D005777 5.6e-192 674.9 569 63.3
FvH4_1g24650 Fragaria vesca HOM05D004776 ORTHO05D005777 1.3e-191 673.7 575 63.0
Lalb_Chr03g0027621 Lupinus albus HOM05D004776 ORTHO05D005777 1.3e-191 673.7 570 63.0
Medtr2g095420 Medicago truncatula HOM05D004776 ORTHO05D005777 6.2e-191 671.4 568 62.7
vmacro14409 Vaccinium macrocarpon HOM05D004776 ORTHO05D005777 8.1e-191 671.0 574 63.8
Gorai.013G268700 Gossypium raimondii HOM05D004776 ORTHO05D005777 1.1e-190 670.6 577 62.2
ECA248G3913 Erigeron canadensis HOM05D004776 ORTHO05D005777 1.4e-190 670.2 579 61.7
TPR.G11629 Trifolium pratense HOM05D004776 ORTHO05D005777 1.8e-190 669.8 568 63.0
FAN26G3463 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.1e-190 669.1 582 62.4
CAN.G1755.5 Capsicum annuum HOM05D004776 ORTHO05D005777 4.0e-190 668.7 573 60.6
FAN28G2552 Fragaria x ananassa HOM05D004776 ORTHO05D005777 4.0e-190 668.7 582 62.5
FAN19G0403 Fragaria x ananassa HOM05D004776 ORTHO05D005777 9.0e-190 667.5 582 62.2
Glyma.13G323400 Glycine max HOM05D004776 ORTHO05D005777 9.0e-190 667.5 572 61.9
Psat0s3241g0040 Pisum sativum HOM05D004776 ORTHO05D005777 9.0e-190 667.5 568 63.0
Potri.009G007900 Populus trichocarpa HOM05D004776 ORTHO05D005777 1.5e-189 666.8 569 63.6
PGR102G1642 Punica granatum HOM05D004776 ORTHO05D005777 4.5e-189 665.2 571 61.5
PGSC0003DMG400007163 Solanum tuberosum HOM05D004776 ORTHO05D005777 1.3e-188 663.7 571 61.1
FAN23G0844 Fragaria x ananassa HOM05D004776 ORTHO05D005777 8.4e-188 661.0 579 62.5
Gorai.003G144600 Gossypium raimondii HOM05D004776 ORTHO05D005777 4.2e-187 658.7 566 62.2
Solyc06g074960.4 Solanum lycopersicum HOM05D004776 ORTHO05D005777 7.1e-187 657.9 577 60.3
VMungo1080G0818 Vigna mungo HOM05D004776 ORTHO05D006187 2.7e-186 656.0 572 62.1
Gohir.D03G137500 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.9e-185 652.1 566 61.8
CsaV3_1G013400 Cucumis sativus L. HOM05D004776 ORTHO05D005777 1.1e-184 650.6 571 60.8
Haze_23751 Corylus avellana HOM05D004776 ORTHO05D005777 1.9e-184 649.8 560 63.6
Sed0027733 Sechium edule HOM05D004776 ORTHO05D005777 1.9e-184 649.8 565 61.1
Cc01_g10560 Coffea canephora HOM05D004776 ORTHO05D005777 9.6e-184 647.5 576 60.9
Cfa010344 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.1e-183 646.4 530 65.1
THA.LOC104799516 Tarenaya hassleriana HOM05D004776 ORTHO05D005777 6.2e-183 644.8 579 59.4
AL5G23530 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 1.2e-181 640.6 573 58.8
Rhsim01G0212300 Rhododendron simsii HOM05D004776 ORTHO05D005777 2.0e-181 639.8 609 59.6
AUR62014926 Chenopodium quinoa HOM05D004776 ORTHO05D005777 1.7e-180 636.7 573 60.6
AT3G45040 Arabidopsis thaliana HOM05D004776 ORTHO05D005777 2.9e-180 636.0 573 58.8
Oeu018486.2 Olea europaea HOM05D004776 ORTHO05D005777 2.9e-180 636.0 581 59.6
arahy.Tifrunner.gnm1.ann1.K18VCE Arachis hypogaea HOM05D004776 ORTHO05D005777 4.9e-180 635.2 579 60.1
SGA_v2.0_scaffold116G32209 Striga asiatica HOM05D004776 ORTHO05D005777 4.9e-180 635.2 568 59.2
ATR1132G031 Amborella trichopoda HOM05D004776 ORTHO05D005777 8.4e-180 634.4 577 59.6
arahy.Tifrunner.gnm1.ann1.69IQEU Arachis hypogaea HOM05D004776 ORTHO05D005777 3.2e-179 632.5 570 60.7
BcaC09g49697 Brassica carinata HOM05D004776 ORTHO05D005777 3.2e-179 632.5 569 58.7
Sp5g16230 Schrenkiella parvula HOM05D004776 ORTHO05D005777 4.2e-179 632.1 568 59.0
ClCG03G002670 Citrullus lanatus HOM05D004776 ORTHO05D005777 1.2e-178 630.6 572 59.4
Dinv29356 Davidia involucrata HOM05D004776 ORTHO05D006187 1.2e-178 630.6 512 64.5
CARHR150930 Cardamine hirsuta HOM05D004776 ORTHO05D005777 1.6e-178 630.2 570 57.9
Sabra09G0004700 Salix brachista HOM05D004776 ORTHO05D005777 2.7e-178 629.4 590 59.8
Carub.0005s1082 Capsella rubella HOM05D004776 ORTHO05D005777 6.0e-178 628.2 573 57.9
arahy.Tifrunner.gnm1.ann1.UZ8W9W Arachis hypogaea HOM05D004776 ORTHO05D005777 1.0e-177 627.5 579 59.2
BolC1t03347H Brassica oleracea HOM05D004776 ORTHO05D005777 3.0e-177 625.9 568 58.6
Gohir.D13G237900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 3.9e-177 625.5 577 59.4
C04p17380 Brassica napus HOM05D004776 ORTHO05D005777 6.7e-177 624.8 569 58.0
BolC4t23289H Brassica oleracea HOM05D004776 ORTHO05D005777 6.7e-177 624.8 569 58.0
BcaC02g11340 Brassica carinata HOM05D004776 ORTHO05D005777 8.7e-177 624.4 569 58.0
COL.COLO4_34701 Corchorus olitorius HOM05D004776 ORTHO05D005777 1.5e-176 623.6 504 64.1
A05p13030 Brassica napus HOM05D004776 ORTHO05D005777 1.9e-176 623.2 569 58.3
AUR62029209 Chenopodium quinoa HOM05D004776 ORTHO05D005777 3.3e-176 622.5 571 59.9
BraA05t20243Z Brassica rapa HOM05D004776 ORTHO05D005777 4.3e-176 622.1 569 58.2
C01p33820 Brassica napus HOM05D004776 ORTHO05D005777 3.7e-175 619.0 594 56.2
SalBow3G4083 Salvia bowleyana HOM05D004776 ORTHO05D005777 4.8e-175 618.6 590 58.0
BcaB05g23422 Brassica carinata HOM05D004776 ORTHO05D005777 6.2e-175 618.2 582 56.9
Duzib168G1494 Durio zibethinus HOM05D004776 ORTHO05D005777 9.0e-174 614.4 565 59.6
Peaxi162Scf01159g00227 Petunia axillaris HOM05D004776 ORTHO05D005777 1.1e-171 607.4 612 55.2
MSTRG.17776 Avicennia marina HOM05D004776 ORTHO05D005777 3.2e-171 605.9 568 58.3
A01p26580 Brassica napus HOM05D004776 ORTHO05D005777 9.3e-171 604.4 574 56.6
Duzib170G0082 Durio zibethinus HOM05D004776 ORTHO05D005777 4.6e-170 602.1 597 57.8
BraA01t02588Z Brassica rapa HOM05D004776 ORTHO05D005777 2.3e-169 599.7 575 56.5
Nitab4.5_0000106g0400 Nicotiana tabacum HOM05D004776 ORTHO05D005777 6.9e-166 588.2 579 57.0
Eucgr.B02538 Eucalyptus grandis HOM05D004776 ORTHO05D005777 1.5e-165 587.0 466 64.6
Ca_01388_v3 Cicer arietinum L. HOM05D004776 ORTHO05D006187 1.0e-164 584.3 486 64.0
Sc05g0005060 Simmondsia chinensis HOM05D004776 ORTHO05D005777 9.4e-163 577.8 509 62.3
MELO3C035466.2 Cucumis melo HOM05D004776 ORTHO05D005777 1.4e-161 573.9 648 51.5
HPP92_025805 Vanilla planifolia HOM05D004776 ORTHO05D005777 1.1e-160 570.9 537 57.0
arahy.Tifrunner.gnm1.ann1.MGN1WG Arachis hypogaea HOM05D004776 ORTHO05D005777 1.5e-160 570.5 589 54.8
Lj1A206T59 Lonicera japonica HOM05D004776 ORTHO05D005777 1.5e-160 570.5 489 61.8
SEGI_33157 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 1.5e-160 570.5 569 53.8
Thhalv10002461m.g Eutrema salsugineum HOM05D004776 ORTHO05D005777 3.8e-156 555.8 513 57.1
DCAR_006106 Daucus carota HOM05D004776 ORTHO05D005777 5.0e-156 555.4 571 55.9
SEGI_23621 Sequoiadendron giganteum HOM05D004776 ORTHO05D005777 2.4e-150 536.6 512 55.7
Lsat_1_v5_gn_1_63021 Lactuca sativa HOM05D004776 ORTHO05D005777 9.1e-150 534.6 573 53.4
EL10Ac9g22573 Beta vulgaris HOM05D004776 ORTHO05D005777 1.7e-148 530.4 572 55.4
Glyma.12G177300 Glycine max HOM05D004776 ORTHO05D005777 6.7e-145 518.5 491 57.6
Nitab4.5_0006015g0020 Nicotiana tabacum HOM05D004776 ORTHO05D005777 1.2e-138 497.7 595 50.4
Manes.11G150502 Manihot esculenta HOM05D004776 ORTHO05D005777 8.0e-138 495.0 553 53.2
MBI18_g10191_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.5e-136 490.7 340 73.2
Migut.N02573 Erythranthe guttata HOM05D004776 ORTHO05D005777 3.2e-131 473.0 489 54.6
Sopen06g031360 Solanum pennellii HOM05D004776 ORTHO05D005777 1.8e-129 467.2 354 67.5
Gohir.A03G030900 Gossypium hirsutum HOM05D004776 ORTHO05D005777 5.2e-129 465.7 354 67.8
Zm00001eb232190 Zea mays HOM05D004776 ORTHO05D005777 1.2e-125 454.5 489 51.7
unitig_8.g3670 Utricularia gibba HOM05D004776 ORTHO05D005777 3.0e-121 439.9 528 49.2
Oeu029897.2 Olea europaea HOM05D004776 ORTHO05D005777 4.5e-117 426.0 408 57.8
AL5G23500 Arabidopsis lyrata HOM05D004776 ORTHO05D005777 3.3e-107 393.3 370 57.3
PGR094G0002 Punica granatum HOM05D004776 ORTHO05D005777 5.6e-107 392.5 242 79.8
PGR094G0004 Punica granatum HOM05D004776 ORTHO05D005777 5.6e-107 392.5 242 79.8
Aqoxy3G00574 Aquilegia oxysepala HOM05D004776 ORTHO05D005777 4.7e-106 389.4 234 81.6
Actinidia14011 Actinidia chinensis HOM05D004776 ORTHO05D005777 6.8e-105 385.6 243 81.5
MBI18_g20776_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 4.1e-102 376.3 404 54.5
MBI18_g43296_MAGBIO Magnolia biondii HOM05D004776 ORTHO05D005777 1.6e-98 364.4 283 66.1
Cpa.g.sc1.24 Carica papaya HOM05D004776 ORTHO05D005777 3.7e-95 353.2 426 49.3
Hund01475 Selenicereus undatus HOM05D004776 ORTHO05D005777 4.9e-95 352.8 417 49.6
BcaNung05690 Brassica carinata HOM05D004776 ORTHO05D005777 3.9e-92 343.2 422 49.5
BcaNung05691 Brassica carinata HOM05D004776 ORTHO05D005777 3.6e-90 336.7 398 48.5
Mapoly0124s0030 Marchantia polymorpha HOM05D004776 ORTHO05D005777 6.8e-89 332.4 573 38.4
Actinidia03704 Actinidia chinensis HOM05D004776 ORTHO05D005777 1.1e-86 325.1 192 84.4
MD00G1033900 Malus domestica HOM05D004776 ORTHO05D005777 5.1e-84 316.2 406 45.8
Pp3c13_8200 Physcomitrium patens HOM05D004776 ORTHO05D005777 8.1e-82 308.9 580 36.4
Atru.chr3.3553 Acer truncatum HOM05D004776 ORTHO05D005777 2.0e-80 304.3 310 54.5
Actinidia03705 Actinidia chinensis HOM05D004776 ORTHO05D005777 3.2e-78 297.0 336 49.7
Atru.chr3.3552 Acer truncatum HOM05D004776 ORTHO05D005777 7.3e-75 285.8 159 86.2
Aa31LG4G14110 Aethionema arabicum HOM05D004776 ORTHO05D005777 9.3e-62 242.3 143 83.9
CDE06G1539 Ceratophyllum demersum HOM05D004776 ORTHO05D005777 7.4e-59 232.6 180 68.9
MD03G1126100 Malus domestica HOM05D004776 ORTHO05D005777 1.6e-58 231.5 466 35.8
Gohir.1Z049525 Gossypium hirsutum HOM05D004776 ORTHO05D005777 6.2e-58 229.6 143 83.2
Gohir.A13G232250 Gossypium hirsutum HOM05D004776 ORTHO05D005777 1.2e-56 225.3 143 81.1
Cpa.g.sc1.25 Carica papaya HOM05D004776 ORTHO05D005777 1.1e-54 218.8 134 82.1
FAN27G1933 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.5e-54 217.6 128 87.5
Ca_01994_v3 Cicer arietinum L. HOM05D004776 ORTHO05D005777 3.5e-53 213.8 232 51.3
CBR_g19018 Chara braunii HOM05D000019 ORTHO05D000002 7.4e-51 206.1 529 32.1
AagrBONN_evm.TU.Sc2ySwM_228.5408 Anthoceros agrestis HOM05D004776 ORTHO05D005777 1.2e-48 198.7 502 30.9
FAN05G3839 Fragaria x ananassa HOM05D004776 ORTHO05D005777 1.1e-35 155.6 88 88.6
FAN07G0780 Fragaria x ananassa HOM05D004776 ORTHO05D005777 7.0e-33 146.4 92 80.4
Os02g0142250 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 1.0e-31 142.5 181 48.1
Os02g0146500 Oryza sativa ssp. japonica HOM05D004776 ORTHO05D005777 2.5e-30 137.9 211 42.2
Gohir.A03G030950 Gossypium hirsutum HOM05D004776 ORTHO05D005777 2.7e-24 117.9 162 46.3
FAN23G0725 Fragaria x ananassa HOM05D004776 ORTHO05D005777 3.5e-24 117.5 125 50.4
MCO11G119 Micromonas commoda HOM05D004776 ORTHO05D005777 4.5e-24 117.1 547 27.8
MD00G1033800 Malus domestica HOM05D004776 ORTHO05D005777 2.0e-19 101.7 132 45.5
Cfa026928 Carpinus fangiana HOM05D004776 ORTHO05D005777 2.2e-18 98.2 258 28.3
Cre06.g277700 Chlamydomonas reinhardtii HOM05D004776 ORTHO05D005777 1.8e-17 95.1 257 30.7
FAN10G3619 Fragaria x ananassa HOM05D004776 ORTHO05D005777 2.0e-16 91.7 52 86.5
MD00G1165500 Malus domestica HOM05D004776 ORTHO05D005777 2.7e-16 91.3 90 52.2
Atru.chr3.3551 Acer truncatum HOM05D004776 ORTHO05D005777 4.2e-14 84.0 41 95.1
PRCOL_00000088 Prasinoderma coloniale HOM05D004776 ORTHO05D005777 5.6e-06 57.0 200 27.5


User provided reference genes

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