Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0054 Papaver somniferum HOM05D004402 ORTHO05D005314 0.0e+00 1100.5 544 100.0
PSO339G5499 Papaver somniferum HOM05D004402 ORTHO05D005314 2.9e-299 1031.2 517 98.6
Nn6g35264 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.9e-235 818.1 514 77.0
TAR633G1938 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.0e-231 805.8 516 76.9
TAR636G0918 Trochodendron aralioides HOM05D004402 ORTHO05D005314 5.1e-227 791.2 493 78.5
Dinv35795 Davidia involucrata HOM05D004402 ORTHO05D005314 3.3e-226 788.5 512 74.6
MBI17_g34762_MAGBIO Magnolia biondii HOM05D004402 ORTHO05D005314 3.6e-225 785.0 530 72.1
GSVIVG01033653001 Vitis vinifera HOM05D004402 ORTHO05D005314 2.4e-221 772.3 505 73.7
CSS0044786 Camellia sinensis var. sinensis HOM05D004402 ORTHO05D005314 2.7e-220 768.8 513 73.1
Atru.chr8.1786 Acer truncatum HOM05D004402 ORTHO05D005314 1.9e-218 762.7 511 73.0
Cfa017631 Carpinus fangiana HOM05D004402 ORTHO05D005314 9.6e-218 760.4 513 72.3
Phvul.001G179700 Phaseolus vulgaris HOM05D004402 ORTHO05D005314 1.3e-217 760.0 513 73.3
Prupe.7G128300 Prunus persica HOM05D004402 ORTHO05D005314 1.3e-217 760.0 513 72.9
Duzib093G2129 Durio zibethinus HOM05D004402 ORTHO05D005314 6.2e-217 757.7 513 72.5
Glyma.19G184800 Glycine max HOM05D004402 ORTHO05D005314 1.4e-216 756.5 513 72.9
Thecc.05G068900 Theobroma cacao HOM05D004402 ORTHO05D005314 3.1e-216 755.4 513 72.3
Ca_08910_v3 Cicer arietinum L. HOM05D004402 ORTHO05D005314 5.3e-216 754.6 512 73.4
Nn2g13812 Nelumbo nucifera HOM05D004402 ORTHO05D005314 3.4e-215 751.9 517 72.1
Lj1g0000599 Lotus japonicus HOM05D004402 ORTHO05D005314 7.6e-215 750.7 513 71.9
vmacro01673 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 9.9e-215 750.4 547 66.9
Glyma.03G184200 Glycine max HOM05D004402 ORTHO05D005314 1.3e-214 750.0 509 72.3
QL07p043056 Quercus lobata HOM05D004402 ORTHO05D005314 2.9e-214 748.8 511 71.4
ATR0910G004 Amborella trichopoda HOM05D004402 ORTHO05D005314 3.8e-214 748.4 518 71.6
CiPaw.10G128900 Carya illinoinensis HOM05D004402 ORTHO05D005314 6.4e-214 747.7 515 71.7
RcHm_v2.0_Chr3g0470441 Rosa chinensis HOM05D004402 ORTHO05D005314 2.4e-213 745.7 513 71.9
FvH4_6g16530 Fragaria vesca HOM05D004402 ORTHO05D005314 3.2e-213 745.3 513 71.7
Ciclev10011527m.g Citrus clementina HOM05D004402 ORTHO05D005314 4.2e-213 745.0 512 71.5
Gorai.009G414300 Gossypium raimondii HOM05D004402 ORTHO05D005314 3.5e-212 741.9 513 71.2
COL.COLO4_09330 Corchorus olitorius HOM05D004402 ORTHO05D005314 4.6e-212 741.5 511 72.2
Gohir.D04G110200 Gossypium hirsutum HOM05D004402 ORTHO05D005314 1.3e-211 740.0 513 71.0
Lalb_Chr20g0112571 Lupinus albus HOM05D004402 ORTHO05D005314 3.0e-211 738.8 510 71.8
Lalb_Chr25g0288951 Lupinus albus HOM05D004402 ORTHO05D005314 3.0e-211 738.8 512 71.1
Sabra06G0097300 Salix brachista HOM05D004402 ORTHO05D005314 6.7e-211 737.6 512 70.9
Peaxi162Scf00311g01314 Petunia axillaris HOM05D004402 ORTHO05D005314 8.7e-211 737.3 511 70.6
Oeu041487.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-210 736.5 513 70.6
Medtr7g102180 Medicago truncatula HOM05D004402 ORTHO05D005314 3.3e-210 735.3 512 70.7
Potri.006G123000 Populus trichocarpa HOM05D004402 ORTHO05D005314 1.6e-209 733.0 512 70.9
Nitab4.5_0000578g0080 Nicotiana tabacum HOM05D004402 ORTHO05D005314 2.1e-209 732.6 512 70.5
Cc06_g04350 Coffea canephora HOM05D004402 ORTHO05D005314 3.7e-209 731.9 512 69.9
TWI77G0706 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 4.8e-209 731.5 512 71.5
TWI74G0242 Tripterygium wilfordii HOM05D004402 ORTHO05D005314 2.4e-208 729.2 513 71.9
ClCG10G020050 Citrullus lanatus HOM05D004402 ORTHO05D005314 1.2e-207 726.9 513 69.0
Solyc09g008310.3 Solanum lycopersicum HOM05D004402 ORTHO05D005314 2.0e-207 726.1 512 69.9
Sopen09g003130 Solanum pennellii HOM05D004402 ORTHO05D005314 2.6e-207 725.7 512 69.7
Sc20g0005590 Simmondsia chinensis HOM05D004402 ORTHO05D005314 1.0e-206 723.8 513 68.4
arahy.Tifrunner.gnm1.ann1.DYK8MJ Arachis hypogaea HOM05D004402 ORTHO05D005314 2.2e-206 722.6 551 66.1
CsaV3_3G036050 Cucumis sativus L. HOM05D004402 ORTHO05D005314 3.8e-206 721.8 511 68.3
CANSAT80G1177 Cannabis sativa HOM05D004402 ORTHO05D005314 6.5e-206 721.1 513 68.8
Lj2C120T4 Lonicera japonica HOM05D004402 ORTHO05D005314 2.5e-205 719.2 474 75.1
Sopen10g033410 Solanum pennellii HOM05D004402 ORTHO05D005314 5.5e-205 718.0 511 69.1
Aa31LG1G21720 Aethionema arabicum HOM05D004402 ORTHO05D005314 7.1e-205 717.6 512 69.9
arahy.Tifrunner.gnm1.ann1.ZWC5L9 Arachis hypogaea HOM05D004402 ORTHO05D005314 7.1e-205 717.6 551 65.7
Dinv37323 Davidia involucrata HOM05D004402 ORTHO05D005314 7.1e-205 717.6 454 77.3
MSTRG.10328 Avicennia marina HOM05D004402 ORTHO05D005314 1.6e-204 716.5 512 68.9
HanXRQChr14g0454821 Helianthus annuus HOM05D004402 ORTHO05D005314 4.6e-204 714.9 503 69.2
DCAR_015004 Daucus carota HOM05D004402 ORTHO05D005314 2.3e-203 712.6 515 70.3
THA.LOC104823232 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 8.7e-203 710.7 512 68.9
Sed0020729 Sechium edule HOM05D004402 ORTHO05D005314 1.1e-202 710.3 513 67.6
vmacro07301 Vaccinium macrocarpon HOM05D004402 ORTHO05D005314 1.1e-202 710.3 600 60.2
PGR004G2373 Punica granatum HOM05D004402 ORTHO05D005314 1.6e-201 706.4 503 69.8
BraA10t45293Z Brassica rapa HOM05D004402 ORTHO05D005314 2.8e-201 705.7 512 68.6
Manes.12G084800 Manihot esculenta HOM05D004402 ORTHO05D005314 3.7e-201 705.3 514 68.7
A03p01170 Brassica napus HOM05D004402 ORTHO05D005314 6.3e-201 704.5 512 68.9
A10p32580 Brassica napus HOM05D004402 ORTHO05D005314 6.3e-201 704.5 512 68.4
C09p73380 Brassica napus HOM05D004402 ORTHO05D005314 8.2e-201 704.1 513 68.8
BcaC06g32058 Brassica carinata HOM05D004402 ORTHO05D005314 1.1e-200 703.7 512 68.4
Zm00001eb333440 Zea mays HOM05D004402 ORTHO05D005314 1.1e-200 703.7 518 67.4
HPP92_025807 Vanilla planifolia HOM05D004402 ORTHO05D005314 1.4e-200 703.4 521 68.5
BcaB01g05821 Brassica carinata HOM05D004402 ORTHO05D005314 1.8e-200 703.0 512 68.4
BolC2t06097H Brassica oleracea HOM05D004402 ORTHO05D005314 1.8e-200 703.0 513 68.2
CAN.G488.15 Capsicum annuum HOM05D004402 ORTHO05D005314 2.4e-200 702.6 511 67.1
BcaC06g32061 Brassica carinata HOM05D004402 ORTHO05D005314 3.1e-200 702.2 514 68.7
Eucgr.K02925 Eucalyptus grandis HOM05D004402 ORTHO05D005314 3.1e-200 702.2 513 69.4
MD04G1091700 Malus domestica HOM05D004402 ORTHO05D005314 5.3e-200 701.4 474 72.4
BcaB01g05839 Brassica carinata HOM05D004402 ORTHO05D005314 1.2e-199 700.3 512 68.6
BolC9t60074H Brassica oleracea HOM05D004402 ORTHO05D005314 1.2e-199 700.3 513 68.6
AUR62026916 Chenopodium quinoa HOM05D004402 ORTHO05D005314 1.2e-199 700.3 516 67.4
C03p01510 Brassica napus HOM05D004402 ORTHO05D005314 2.0e-199 699.5 512 68.6
CARHR209910 Cardamine hirsuta HOM05D004402 ORTHO05D005314 2.6e-199 699.1 512 68.2
AT5G03430 Arabidopsis thaliana HOM05D004402 ORTHO05D005314 3.4e-199 698.7 512 68.2
C02p01070 Brassica napus HOM05D004402 ORTHO05D005314 3.4e-199 698.7 513 67.8
BolC3t12705H Brassica oleracea HOM05D004402 ORTHO05D005314 3.4e-199 698.7 512 68.6
DCAR_017670 Daucus carota HOM05D004402 ORTHO05D005314 5.9e-199 698.0 505 69.7
CDE10G0806 Ceratophyllum demersum HOM05D004402 ORTHO05D005314 7.7e-199 697.6 512 67.2
MD12G1109700 Malus domestica HOM05D004402 ORTHO05D005314 1.7e-198 696.4 478 72.0
THA.LOC104826918 Tarenaya hassleriana HOM05D004402 ORTHO05D005314 1.7e-198 696.4 511 68.1
SalBow2G1223 Salvia bowleyana HOM05D004402 ORTHO05D005314 3.8e-198 695.3 504 67.9
COL.COLO4_26944 Corchorus olitorius HOM05D004402 ORTHO05D005314 8.5e-198 694.1 481 71.1
SalBow3G3127 Salvia bowleyana HOM05D004402 ORTHO05D005314 8.5e-198 694.1 504 68.1
Sp6g39310 Schrenkiella parvula HOM05D004402 ORTHO05D005314 1.4e-197 693.3 512 68.2
BraA02t04760Z Brassica rapa HOM05D004402 ORTHO05D005314 1.9e-197 693.0 515 68.2
Carub.0006s0224 Capsella rubella HOM05D004402 ORTHO05D005314 2.5e-197 692.6 512 67.4
Thhalv10013303m.g Eutrema salsugineum HOM05D004402 ORTHO05D005314 2.5e-197 692.6 520 66.7
FAN09G4748 Fragaria x ananassa HOM05D004402 ORTHO05D005314 3.2e-197 692.2 524 67.4
AL6G12780 Arabidopsis lyrata HOM05D004402 ORTHO05D005314 4.2e-197 691.8 512 67.6
FAN14G0478 Fragaria x ananassa HOM05D004402 ORTHO05D005314 2.7e-196 689.1 513 67.8
Solyc10g083960.2 Solanum lycopersicum HOM05D004402 ORTHO05D005314 3.6e-196 688.7 511 67.1
Migut.L01711 Erythranthe guttata HOM05D004402 ORTHO05D005314 7.9e-196 687.6 511 67.1
ECA238G0572 Erigeron canadensis HOM05D004402 ORTHO05D005314 2.5e-194 682.6 503 66.2
VMungo1383G0058 Vigna mungo HOM05D004402 ORTHO05D005314 3.3e-194 682.2 465 73.1
BraA03t09499Z Brassica rapa HOM05D004402 ORTHO05D005314 5.7e-194 681.4 495 69.1
EL10Ac7g16646 Beta vulgaris HOM05D004402 ORTHO05D005314 4.8e-193 678.3 584 59.9
Rhsim03G0090600 Rhododendron simsii HOM05D004402 ORTHO05D005314 1.1e-192 677.2 565 61.2
MELO3C009365.2 Cucumis melo HOM05D004402 ORTHO05D005314 2.6e-191 672.5 513 64.9
Lsat_1_v5_gn_1_51600 Lactuca sativa HOM05D004402 ORTHO05D005314 1.0e-190 670.6 500 66.6
ECA248G3038 Erigeron canadensis HOM05D004402 ORTHO05D005314 3.2e-189 665.6 501 66.1
AUR62042064 Chenopodium quinoa HOM05D004402 ORTHO05D005314 4.2e-189 665.2 516 65.5
FAN05G2520 Fragaria x ananassa HOM05D004402 ORTHO05D005314 5.1e-187 658.3 515 65.6
Nitab4.5_0000063g0160 Nicotiana tabacum HOM05D004402 ORTHO05D005314 5.1e-187 658.3 512 66.0
FAN05G1679 Fragaria x ananassa HOM05D004402 ORTHO05D005314 1.1e-186 657.1 524 64.9
Psat3g041880 Pisum sativum HOM05D004402 ORTHO05D005314 5.7e-186 654.8 453 72.6
Nitab4.5_0000814g0100 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.7e-186 654.1 512 66.0
Peaxi162Scf00722g00015 Petunia axillaris HOM05D004402 ORTHO05D005314 2.8e-185 652.5 512 64.8
FAN02G2572 Fragaria x ananassa HOM05D004402 ORTHO05D005314 7.0e-184 647.9 538 63.2
Ah.08g211550 Amaranthus hybridus HOM05D004402 ORTHO05D005314 3.5e-183 645.6 511 62.4
SGA_v2.0_scaffold75G24834 Striga asiatica HOM05D004402 ORTHO05D005314 5.9e-183 644.8 513 64.5
BcaB05g21840 Brassica carinata HOM05D004402 ORTHO05D005314 1.3e-182 643.7 504 64.1
Nitab4.5_0010955g0010 Nicotiana tabacum HOM05D004402 ORTHO05D005314 9.4e-181 637.5 526 62.4
Actinidia28911 Actinidia chinensis HOM05D004402 ORTHO05D005314 6.1e-180 634.8 471 67.5
Oeu005028.1 Olea europaea HOM05D004402 ORTHO05D005314 1.5e-178 630.2 525 62.3
BcaC03g13007 Brassica carinata HOM05D004402 ORTHO05D005314 3.7e-177 625.5 464 67.5
unitig_60.g25815 Utricularia gibba HOM05D004402 ORTHO05D005314 5.5e-173 611.7 536 59.5
Migut.J00646 Erythranthe guttata HOM05D004402 ORTHO05D005314 2.2e-161 573.2 402 69.7
CAN.G900.21 Capsicum annuum HOM05D004402 ORTHO05D005314 5.4e-160 568.5 402 69.4
AagrBONN_evm.TU.Sc2ySwM_362.2690 Anthoceros agrestis HOM05D004402 ORTHO05D005314 1.2e-154 550.8 527 53.7
Mapoly0054s0056 Marchantia polymorpha HOM05D004402 ORTHO05D005314 4.4e-154 548.9 556 53.1
Hund20335 Selenicereus undatus HOM05D004402 ORTHO05D005314 2.7e-151 539.7 663 48.0
Haze_20522 Corylus avellana HOM05D004402 ORTHO05D005314 1.2e-148 530.8 492 58.1
SMO146G0130 Selaginella moellendorffii HOM05D004402 ORTHO05D005314 4.0e-147 525.8 421 63.2
SHI12325 Sapria himalayana HOM05D004402 ORTHO05D005314 4.9e-137 492.3 463 57.0
TPR.G32815 Trifolium pratense HOM05D004402 ORTHO05D005314 2.7e-127 459.9 339 68.4
Aqoxy3G01670 Aquilegia oxysepala HOM05D004402 ORTHO05D005314 5.6e-125 452.2 279 77.4
SGA_v2.0_scaffold224G42938 Striga asiatica HOM05D004402 ORTHO05D005314 6.2e-124 448.7 510 49.6
PGSC0003DMG401028184 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.4e-112 409.1 273 71.8
Gohir.A04G071600 Gossypium hirsutum HOM05D004402 ORTHO05D005314 7.8e-111 405.2 275 73.1
Zm00001eb128460 Zea mays HOM05D004402 ORTHO05D005314 1.6e-92 344.4 240 67.9
SEGI_14784 Sequoiadendron giganteum HOM05D004402 ORTHO05D005314 1.8e-91 340.9 246 69.5
Zm00001eb127890 Zea mays HOM05D004402 ORTHO05D005314 1.0e-86 325.1 247 66.0
Gohir.A04G071700 Gossypium hirsutum HOM05D004402 ORTHO05D005314 2.0e-77 294.3 211 67.8
Hma1.2p1_0828F.1_g225130 Hydrangea macrophylla HOM05D004402 ORTHO05D005314 4.7e-71 273.1 217 65.4
Cre13.g592500 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D005314 4.7e-63 246.5 480 34.0
HanXRQChr07g0194721 Helianthus annuus HOM05D004402 ORTHO05D005314 5.2e-62 243.0 504 35.5
PRCOL_00001257 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 9.1e-59 232.3 397 35.5
Os01g0259600 Oryza sativa ssp. japonica HOM05D004402 ORTHO05D005314 2.4e-51 207.6 139 72.7
TAR636G0069 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.1e-43 182.2 189 50.3
TAR636G0130 Trochodendron aralioides HOM05D004402 ORTHO05D005314 1.4e-43 181.8 121 73.6
VMungo1383G2351 Vigna mungo HOM05D004402 ORTHO05D005314 3.4e-37 160.6 110 72.7
PRCOL_00006213 Prasinoderma coloniale HOM05D004402 ORTHO05D005314 2.2e-36 157.9 187 42.2
SalBow3G0082 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.6e-29 134.4 250 38.0
PGSC0003DMG400003892 Solanum tuberosum HOM05D004402 ORTHO05D005314 5.8e-29 133.3 112 58.0
SalBow3G2408 Salvia bowleyana HOM05D004402 ORTHO05D005314 7.5e-29 132.9 250 37.6
TPR.G11110 Trifolium pratense HOM05D004402 ORTHO05D005314 1.4e-27 128.6 68 83.8
SalBow3G1023 Salvia bowleyana HOM05D004402 ORTHO05D005314 2.5e-24 117.9 101 64.4
Cfa022272 Carpinus fangiana HOM05D004402 ORTHO05D005314 2.9e-20 104.4 185 30.8
HanXRQChr13g0396631 Helianthus annuus HOM05D004402 ORTHO05D005314 1.6e-18 98.6 86 62.8
CBR_g4033 Chara braunii HOM05D004402 ORTHO05D005314 5.1e-17 93.6 114 46.5
CAN.G900.20 Capsicum annuum HOM05D004402 ORTHO05D005314 2.6e-13 81.3 61 63.9
Lsat_1_v5_gn_6_17200 Lactuca sativa HOM05D004402 ORTHO05D005314 2.7e-10 71.2 85 47.1
Cre01.g026650 Chlamydomonas reinhardtii HOM05D004402 ORTHO05D007141 6.6e-09 66.6 211 27.0
TAR636G1582 Trochodendron aralioides HOM05D004402 ORTHO05D005314 2.8e-07 61.2 36 75.0
CBR_g4032 Chara braunii HOM05D004402 ORTHO05D043925 3.6e-07 60.8 35 77.1
Cfa025539 Carpinus fangiana HOM05D003439 ORTHO05D004062 2.4e-06 58.2 136 29.4


User provided reference genes

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