Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0028 Papaver somniferum HOM05D004765 ORTHO05D005900 0.0e+00 1106.7 564 100.0
PSO339G1244 Papaver somniferum HOM05D004765 ORTHO05D005900 0.0e+00 1093.6 564 98.6
Prupe.6G135800 Prunus persica HOM05D004765 ORTHO05D005900 1.5e-253 879.4 559 78.9
RcHm_v2.0_Chr5g0045881 Rosa chinensis HOM05D004765 ORTHO05D005900 3.3e-253 878.2 562 77.9
GSVIVG01036081001 Vitis vinifera HOM05D004765 ORTHO05D005900 7.3e-253 877.1 565 78.6
CiPaw.14G098100 Carya illinoinensis HOM05D004765 ORTHO05D005900 3.4e-250 868.2 561 77.4
CSS0013873 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.2e-249 865.5 557 77.7
CSS0028820 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 2.9e-249 865.1 557 77.7
Manes.11G164300 Manihot esculenta HOM05D004765 ORTHO05D005900 6.4e-249 864.0 556 77.5
Thecc.09G278900 Theobroma cacao HOM05D004765 ORTHO05D005900 1.4e-248 862.8 561 77.4
MD11G1168600 Malus domestica HOM05D004765 ORTHO05D005900 5.4e-248 860.9 559 77.5
Cfa009988 Carpinus fangiana HOM05D004765 ORTHO05D005900 1.2e-247 859.8 561 77.5
Dinv22819 Davidia involucrata HOM05D004765 ORTHO05D005900 3.5e-247 858.2 557 76.8
Actinidia07259 Actinidia chinensis HOM05D004765 ORTHO05D005900 4.6e-247 857.8 556 77.5
Dinv08934 Davidia involucrata HOM05D004765 ORTHO05D005900 1.0e-246 856.7 554 76.7
FAN11G2377 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.0e-246 856.7 559 76.9
FAN16G1441 Fragaria x ananassa HOM05D004765 ORTHO05D005900 1.7e-246 855.9 559 76.9
MD03G1149800 Malus domestica HOM05D004765 ORTHO05D005900 1.7e-246 855.9 563 76.7
Potri.009G160400 Populus trichocarpa HOM05D004765 ORTHO05D005900 2.3e-246 855.5 558 76.5
COL.COLO4_34006 Corchorus olitorius HOM05D004765 ORTHO05D005900 3.9e-246 854.7 561 76.8
vmacro14340 Vaccinium macrocarpon HOM05D004765 ORTHO05D005900 3.9e-246 854.7 551 77.3
Actinidia24229 Actinidia chinensis HOM05D004765 ORTHO05D005900 8.6e-246 853.6 556 77.0
Gorai.009G084100 Gossypium raimondii HOM05D004765 ORTHO05D005900 1.5e-245 852.8 561 76.3
Gohir.A05G079600 Gossypium hirsutum HOM05D004765 ORTHO05D005900 1.9e-245 852.4 561 76.5
PGR119G0504 Punica granatum HOM05D004765 ORTHO05D005900 2.5e-245 852.0 559 77.6
Ciclev10028115m.g Citrus clementina HOM05D004765 ORTHO05D005900 5.6e-245 850.9 565 75.9
Gohir.D05G082500 Gossypium hirsutum HOM05D004765 ORTHO05D005900 7.3e-245 850.5 561 75.9
Sabra09G0125600 Salix brachista HOM05D004765 ORTHO05D005900 9.6e-245 850.1 561 76.5
QL01p011857 Quercus lobata HOM05D004765 ORTHO05D005900 2.1e-244 849.0 563 76.4
Cpa.g.sc195.23 Carica papaya HOM05D004765 ORTHO05D005900 8.1e-244 847.0 549 76.5
FAN21G2648 Fragaria x ananassa HOM05D004765 ORTHO05D005900 4.0e-243 844.7 574 74.9
CSS0015967 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 9.0e-243 843.6 555 77.1
FAN25G0471 Fragaria x ananassa HOM05D004765 ORTHO05D005900 9.0e-243 843.6 582 74.1
CSS0022046 Camellia sinensis var. sinensis HOM05D004765 ORTHO05D005900 3.4e-242 841.6 555 76.9
Gohir.D09G096800 Gossypium hirsutum HOM05D004765 ORTHO05D005900 5.8e-242 840.9 561 75.8
Gorai.006G113500 Gossypium raimondii HOM05D004765 ORTHO05D005900 7.6e-242 840.5 561 75.6
Sabra04G0134200 Salix brachista HOM05D004765 ORTHO05D005900 1.3e-241 839.7 562 74.4
TWI31G1403 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 1.3e-241 839.7 563 75.5
Gohir.A09G097000 Gossypium hirsutum HOM05D004765 ORTHO05D005900 2.2e-241 839.0 561 75.4
Potri.004G198200 Populus trichocarpa HOM05D004765 ORTHO05D005900 6.4e-241 837.4 558 74.7
Sc12g0004610 Simmondsia chinensis HOM05D004765 ORTHO05D005900 6.4e-241 837.4 565 74.0
Haze_23347 Corylus avellana HOM05D004765 ORTHO05D005900 8.4e-241 837.0 629 69.6
CANSAT54G2137 Cannabis sativa HOM05D004765 ORTHO05D005900 1.1e-240 836.6 560 75.4
Aqoxy2G01052 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 4.2e-240 834.7 565 75.4
TWI79G1303 Tripterygium wilfordii HOM05D004765 ORTHO05D005900 5.4e-240 834.3 556 75.2
Nn6g34806 Nelumbo nucifera HOM05D004765 ORTHO05D005900 4.6e-239 831.2 562 76.0
Glyma.12G091700 Glycine max HOM05D004765 ORTHO05D005900 3.0e-238 828.6 549 76.0
TPR.G17196 Trifolium pratense HOM05D004765 ORTHO05D005900 1.9e-237 825.9 549 76.0
DCAR_006171 Daucus carota HOM05D004765 ORTHO05D005900 2.5e-237 825.5 558 75.1
Lalb_Chr01g0004931 Lupinus albus HOM05D004765 ORTHO05D005900 3.3e-237 825.1 549 76.0
Hund20934 Selenicereus undatus HOM05D004765 ORTHO05D005900 4.3e-237 824.7 557 73.8
Ca_19442_v3 Cicer arietinum L. HOM05D004765 ORTHO05D005900 1.3e-236 823.2 549 75.8
Lalb_Chr03g0028231 Lupinus albus HOM05D004765 ORTHO05D005900 1.3e-236 823.2 549 75.6
Carub.0005s1005 Capsella rubella HOM05D004765 ORTHO05D005900 6.2e-236 820.8 555 73.9
Rhsim01G0203800 Rhododendron simsii HOM05D004765 ORTHO05D005900 8.1e-236 820.5 602 70.1
AT3G44330 Arabidopsis thaliana HOM05D004765 ORTHO05D005900 1.1e-235 820.1 558 73.7
Medtr4g052530 Medicago truncatula HOM05D004765 ORTHO05D005900 1.4e-235 819.7 569 73.8
Glyma.11G181400 Glycine max HOM05D004765 ORTHO05D005900 1.8e-235 819.3 549 75.0
Phvul.011G096100 Phaseolus vulgaris HOM05D004765 ORTHO05D005900 2.4e-235 818.9 549 74.7
Lsat_1_v5_gn_1_77581 Lactuca sativa HOM05D004765 ORTHO05D005900 4.0e-235 818.1 559 73.3
CARHR104550 Cardamine hirsuta HOM05D004765 ORTHO05D005900 5.3e-235 817.8 555 73.9
AL5G22480 Arabidopsis lyrata HOM05D004765 ORTHO05D005900 2.0e-234 815.8 558 73.3
Eucgr.J00522 Eucalyptus grandis HOM05D004765 ORTHO05D005900 2.0e-234 815.8 544 76.3
Atru.chr3.3169 Acer truncatum HOM05D004765 ORTHO05D005900 5.8e-234 814.3 539 76.8
THA.LOC104814781 Tarenaya hassleriana HOM05D004765 ORTHO05D005900 1.7e-233 812.8 555 73.7
Sp5g16890 Schrenkiella parvula HOM05D004765 ORTHO05D005900 2.9e-233 812.0 555 73.5
Thhalv10010249m.g Eutrema salsugineum HOM05D004765 ORTHO05D005900 8.4e-233 810.4 555 73.5
HanXRQChr11g0343661 Helianthus annuus HOM05D004765 ORTHO05D005900 8.4e-233 810.4 555 73.7
HanXRQChr01g0024031 Helianthus annuus HOM05D004765 ORTHO05D005900 1.4e-232 809.7 562 72.8
arahy.Tifrunner.gnm1.ann1.HXUJ4C Arachis hypogaea HOM05D004765 ORTHO05D005900 1.9e-232 809.3 549 74.3
Aqoxy4G02718 Aquilegia oxysepala HOM05D004765 ORTHO05D005900 3.2e-232 808.5 600 68.8
BcaB01g01169 Brassica carinata HOM05D004765 ORTHO05D005900 3.2e-232 808.5 555 72.4
arahy.Tifrunner.gnm1.ann1.E8Y1JT Arachis hypogaea HOM05D004765 ORTHO05D005900 1.2e-231 806.6 549 74.1
BraA06t25294Z Brassica rapa HOM05D004765 ORTHO05D005900 1.2e-231 806.6 555 73.0
Lj3g0002417 Lotus japonicus HOM05D004765 ORTHO05D005900 1.6e-231 806.2 549 74.5
A06p22050 Brassica napus HOM05D004765 ORTHO05D005900 2.1e-231 805.8 555 73.0
Cc01_g08830 Coffea canephora HOM05D004765 ORTHO05D005900 4.6e-231 804.7 567 71.8
Sed0019641 Sechium edule HOM05D004765 ORTHO05D005900 4.6e-231 804.7 565 72.4
ClCG01G011820 Citrullus lanatus HOM05D004765 ORTHO05D005900 6.0e-231 804.3 566 73.1
ECA248G3663 Erigeron canadensis HOM05D004765 ORTHO05D005900 6.0e-231 804.3 558 72.8
Duzib170G0619 Durio zibethinus HOM05D004765 ORTHO05D005900 1.9e-229 799.3 561 72.2
BcaC01g02231 Brassica carinata HOM05D004765 ORTHO05D005900 3.3e-229 798.5 552 72.6
A06p26850 Brassica napus HOM05D004765 ORTHO05D005900 4.3e-229 798.1 552 72.8
MELO3C025589.2 Cucumis melo HOM05D004765 ORTHO05D005900 4.3e-229 798.1 565 72.4
ATR0081G060 Amborella trichopoda HOM05D004765 ORTHO05D005900 5.6e-229 797.7 562 71.2
C03p69330 Brassica napus HOM05D004765 ORTHO05D005900 5.6e-229 797.7 555 72.3
BolC3t19191H Brassica oleracea HOM05D004765 ORTHO05D005900 5.6e-229 797.7 555 72.3
MSTRG.18770 Avicennia marina HOM05D004765 ORTHO05D005900 9.6e-229 797.0 552 73.2
BcaC01g02031 Brassica carinata HOM05D004765 ORTHO05D005900 3.7e-228 795.0 555 71.9
CsaV3_1G015080 Cucumis sativus L. HOM05D004765 ORTHO05D005900 8.1e-228 793.9 565 71.7
BcaB02g10755 Brassica carinata HOM05D004765 ORTHO05D005900 5.8e-226 787.7 556 72.1
CDE08G1681 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 1.3e-225 786.6 548 73.0
Migut.N02474 Erythranthe guttata HOM05D004765 ORTHO05D005900 2.2e-225 785.8 561 71.8
Nitab4.5_0003068g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.2e-225 785.8 553 73.4
Nitab4.5_0000227g0370 Nicotiana tabacum HOM05D004765 ORTHO05D005900 1.9e-224 782.7 568 71.8
Peaxi162Scf00224g00217 Petunia axillaris HOM05D004765 ORTHO05D005900 2.4e-224 782.3 555 72.3
AUR62020257 Chenopodium quinoa HOM05D004765 ORTHO05D005900 5.5e-224 781.2 533 73.9
Peaxi162Scf00345g01023 Petunia axillaris HOM05D004765 ORTHO05D005900 1.2e-223 780.0 562 71.7
Sopen11g027390 Solanum pennellii HOM05D004765 ORTHO05D005900 2.1e-223 779.2 565 71.3
Solyc11g068670.2 Solanum lycopersicum HOM05D004765 ORTHO05D005900 3.5e-223 778.5 565 71.3
Aa31LG4G13830 Aethionema arabicum HOM05D004765 ORTHO05D005900 7.9e-223 777.3 537 72.8
Solyc01g009380.3 Solanum lycopersicum HOM05D004765 ORTHO05D005900 1.8e-222 776.2 566 70.7
Nitab4.5_0008177g0070 Nicotiana tabacum HOM05D004765 ORTHO05D005900 7.4e-221 770.8 611 67.8
Nitab4.5_0000731g0090 Nicotiana tabacum HOM05D004765 ORTHO05D005900 2.4e-219 765.8 546 72.9
SalBow6G2851 Salvia bowleyana HOM05D004765 ORTHO05D005900 2.0e-218 762.7 598 66.9
Os08g0102100 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D005900 2.6e-218 762.3 555 68.5
EL10Ac7g16329 Beta vulgaris HOM05D004765 ORTHO05D005900 4.5e-218 761.5 632 63.0
Psat7g187280 Pisum sativum HOM05D004765 ORTHO05D005900 5.8e-218 761.1 504 75.6
HPP92_006357 Vanilla planifolia HOM05D004765 ORTHO05D005900 1.7e-217 759.6 559 69.1
CAN.G745.10 Capsicum annuum HOM05D004765 ORTHO05D005900 4.9e-217 758.1 563 69.4
Oeu051604.1 Olea europaea HOM05D004765 ORTHO05D005900 5.1e-214 748.0 557 69.7
SGA_v2.0_scaffold177G39433 Striga asiatica HOM05D004765 ORTHO05D005900 2.8e-212 742.3 561 68.3
Zm00001eb259900 Zea mays HOM05D004765 ORTHO05D005900 8.2e-212 740.7 557 65.9
SGA_v2.0_scaffold295G47508 Striga asiatica HOM05D004765 ORTHO05D005900 1.2e-207 726.9 559 65.8
Duzib168G0312 Durio zibethinus HOM05D004765 ORTHO05D005900 2.1e-207 726.1 559 67.8
FvH4_3g25670 Fragaria vesca HOM05D004765 ORTHO05D005900 1.0e-206 723.8 474 76.2
Lj1A257T30 Lonicera japonica HOM05D004765 ORTHO05D005900 5.0e-201 704.9 453 77.5
unitig_0.g1473 Utricularia gibba HOM05D004765 ORTHO05D005900 1.4e-200 703.4 578 63.8
Mapoly0185s0020 Marchantia polymorpha HOM05D004765 ORTHO05D005900 7.9e-199 697.6 564 62.4
CDE02G4012 Ceratophyllum demersum HOM05D004765 ORTHO05D005900 3.0e-198 695.7 567 65.6
Sc12g0004660 Simmondsia chinensis HOM05D004765 ORTHO05D005900 1.3e-196 690.3 480 72.1
Zm00001eb198750 Zea mays HOM05D004765 ORTHO05D005900 3.8e-193 678.7 505 65.3
Migut.D02363 Erythranthe guttata HOM05D004765 ORTHO05D005900 7.4e-189 664.5 477 70.0
Pp3c12_11630 Physcomitrium patens HOM05D004765 ORTHO05D005900 1.8e-182 643.3 547 60.1
SMO141G0161 Selaginella moellendorffii HOM05D004765 ORTHO05D005900 4.4e-181 638.6 564 58.9
AUR62001526 Chenopodium quinoa HOM05D004765 ORTHO05D005900 9.5e-168 594.3 413 71.9
TAR633G2468 Trochodendron aralioides HOM05D004765 ORTHO05D005900 2.8e-159 566.2 367 76.3
BraA06t25618Z Brassica rapa HOM05D004765 ORTHO05D005900 1.4e-158 563.9 394 70.8
C03p67600 Brassica napus HOM05D004765 ORTHO05D005900 3.0e-158 562.8 394 70.6
BolSC21t60262H Brassica oleracea HOM05D004765 ORTHO05D005900 3.4e-157 559.3 394 70.3
Oeu014468.1 Olea europaea HOM05D004765 ORTHO05D005900 6.0e-154 548.5 359 78.0
CBR_g17963 Chara braunii HOM05D004765 ORTHO05D005900 8.6e-145 518.1 559 49.9
AagrBONN_evm.TU.Sc2ySwM_368.2350 Anthoceros agrestis HOM05D004765 ORTHO05D005900 3.5e-138 496.1 533 48.6
Sopen01g004890 Solanum pennellii HOM05D004765 ORTHO05D005900 2.6e-125 453.4 334 69.8
VMungo1127G1239 Vigna mungo HOM05D004765 ORTHO05D005900 1.3e-116 424.5 272 77.2
CAN.G226.4 Capsicum annuum HOM05D004765 ORTHO05D005900 3.1e-110 403.3 273 72.9
SEGI_38882 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.0e-93 347.4 220 76.4
Migut.D02428 Erythranthe guttata HOM05D004765 ORTHO05D005900 4.5e-77 293.1 198 76.8
CAN.G30.1 Capsicum annuum HOM05D004765 ORTHO05D005900 5.9e-77 292.7 193 71.0
Psat4g157520 Pisum sativum HOM05D004765 ORTHO05D005900 3.1e-62 243.8 228 59.2
SEGI_20304 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 7.7e-53 212.6 141 74.5
CAN.G198.33 Capsicum annuum HOM05D004765 ORTHO05D005900 1.3e-47 195.3 151 62.9
CAN.G1211.3 Capsicum annuum HOM05D004765 ORTHO05D005900 2.4e-46 191.0 146 66.4
CAN.G79.7 Capsicum annuum HOM05D004765 ORTHO05D005900 1.4e-41 175.3 117 71.8
CAN.G79.6 Capsicum annuum HOM05D004765 ORTHO05D005900 8.9e-41 172.6 186 52.2
TAR633G0557 Trochodendron aralioides HOM05D004765 ORTHO05D005900 5.4e-30 136.7 85 82.4
Lj1C257T9 Lonicera japonica HOM05D004765 ORTHO05D030006 2.1e-26 124.8 86 72.1
Sc12g0004650 Simmondsia chinensis HOM05D004765 ORTHO05D030006 1.1e-22 112.5 91 64.8
QL04p027443 Quercus lobata HOM05D004765 ORTHO05D030006 1.9e-22 111.7 83 71.1
SEGI_24377 Sequoiadendron giganteum HOM05D004765 ORTHO05D030006 2.7e-21 107.8 90 55.6
SEGI_19690 Sequoiadendron giganteum HOM05D004765 ORTHO05D005900 2.3e-20 104.8 96 56.2
VMungo0251G2550 Vigna mungo HOM05D000107 ORTHO05D000001 3.0e-20 104.4 109 51.4
Os12g0509400 Oryza sativa ssp. japonica HOM05D004765 ORTHO05D296799 1.6e-10 72.0 53 64.2
Pp3c10_16910 Physcomitrium patens HOM05D004765 ORTHO05D315325 4.2e-06 57.4 112 33.0


User provided reference genes

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