Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO801G0019 Papaver somniferum HOM05D005744 ORTHO05D007503 2.3e-254 881.7 444 100.0
PSO339G3552 Papaver somniferum HOM05D005744 ORTHO05D007503 7.1e-227 790.4 422 95.3
PSO782G2798 Papaver somniferum HOM05D005744 ORTHO05D007503 6.2e-223 777.3 421 91.0
Nn3g16475 Nelumbo nucifera HOM05D005744 ORTHO05D007503 5.7e-176 621.3 414 72.0
GSVIVG01008538001 Vitis vinifera HOM05D005744 ORTHO05D007503 5.3e-174 614.8 417 71.2
Aqoxy3G01542 Aquilegia oxysepala HOM05D005744 ORTHO05D007503 7.7e-173 610.9 414 70.5
PSO478G2520 Papaver somniferum HOM05D005744 ORTHO05D007503 3.3e-168 595.5 344 84.9
COL.COLO4_28103 Corchorus olitorius HOM05D005744 ORTHO05D007503 1.1e-166 590.5 419 69.7
Manes.14G051500 Manihot esculenta HOM05D005744 ORTHO05D007503 1.0e-164 583.9 421 68.4
Potri.015G095400 Populus trichocarpa HOM05D005744 ORTHO05D007503 1.0e-164 583.9 414 67.6
Thecc.03G128600 Theobroma cacao HOM05D005744 ORTHO05D007503 1.0e-164 583.9 417 67.1
Gorai.008G206000 Gossypium raimondii HOM05D005744 ORTHO05D007503 3.8e-164 582.0 417 67.6
Ciclev10020324m.g Citrus clementina HOM05D005744 ORTHO05D007503 1.9e-163 579.7 412 66.7
Gohir.D12G191700 Gossypium hirsutum HOM05D005744 ORTHO05D007503 2.5e-163 579.3 417 67.1
Gohir.A12G189400 Gossypium hirsutum HOM05D005744 ORTHO05D007503 4.2e-163 578.6 417 67.1
Atru.chr9.1122 Acer truncatum HOM05D005744 ORTHO05D007503 5.5e-163 578.2 418 67.2
QL10p003203 Quercus lobata HOM05D005744 ORTHO05D007503 7.2e-163 577.8 413 69.2
CSS0041302 Camellia sinensis var. sinensis HOM05D005744 ORTHO05D007503 1.0e-161 573.9 419 66.6
CiPaw.11G008100 Carya illinoinensis HOM05D005744 ORTHO05D007503 1.0e-161 573.9 418 68.2
Prupe.5G151700 Prunus persica HOM05D005744 ORTHO05D007503 1.0e-161 573.9 418 69.6
arahy.Tifrunner.gnm1.ann1.DQ5P63 Arachis hypogaea HOM05D005744 ORTHO05D007503 1.4e-161 573.5 414 66.4
Sabra15G0116400 Salix brachista HOM05D005744 ORTHO05D007503 1.4e-161 573.5 422 69.0
arahy.Tifrunner.gnm1.ann1.SJIN4P Arachis hypogaea HOM05D005744 ORTHO05D007503 5.2e-161 571.6 417 66.2
MD14G1157700 Malus domestica HOM05D005744 ORTHO05D007503 1.5e-160 570.1 416 68.5
Sed0005313 Sechium edule HOM05D005744 ORTHO05D007503 1.5e-160 570.1 425 66.8
Cfa018827 Carpinus fangiana HOM05D005744 ORTHO05D007503 2.6e-160 569.3 420 68.6
THA.LOC104825016 Tarenaya hassleriana HOM05D005744 ORTHO05D007503 4.4e-160 568.5 416 66.3
HanXRQChr16g0498211 Helianthus annuus HOM05D005744 ORTHO05D007503 9.7e-160 567.4 416 64.7
Oeu010732.1 Olea europaea HOM05D005744 ORTHO05D007503 4.8e-159 565.1 423 65.0
Cc08_g16880 Coffea canephora HOM05D005744 ORTHO05D007503 6.3e-159 564.7 417 67.6
Lsat_1_v5_gn_4_80081 Lactuca sativa HOM05D005744 ORTHO05D007503 8.3e-159 564.3 414 64.5
Lalb_Chr08g0237111 Lupinus albus HOM05D005744 ORTHO05D007503 5.3e-158 561.6 414 65.5
Ca_24503_v3 Cicer arietinum L. HOM05D005744 ORTHO05D007503 9.1e-158 560.8 415 68.0
ClCG06G017860 Citrullus lanatus HOM05D005744 ORTHO05D007503 7.7e-157 557.8 429 63.4
HPP92_020223 Vanilla planifolia HOM05D005744 ORTHO05D007503 7.7e-157 557.8 425 63.5
CANSAT80G0573 Cannabis sativa HOM05D005744 ORTHO05D007503 1.0e-156 557.4 421 66.3
DCAR_021616 Daucus carota HOM05D005744 ORTHO05D007503 3.8e-156 555.4 428 62.6
Rhsim08G0189700 Rhododendron simsii HOM05D005744 ORTHO05D007503 5.0e-156 555.1 412 67.7
ATR0561G060 Amborella trichopoda HOM05D005744 ORTHO05D007503 6.5e-156 554.7 424 64.9
Medtr3g074980 Medicago truncatula HOM05D005744 ORTHO05D007503 6.5e-156 554.7 415 65.5
RhsimUnG0231400 Rhododendron simsii HOM05D005744 ORTHO05D007503 1.1e-155 553.9 412 67.7
MBI07_g31012_MAGBIO Magnolia biondii HOM05D005744 ORTHO05D007503 1.5e-155 553.5 421 67.9
MELO3C026209.2 Cucumis melo HOM05D005744 ORTHO05D007503 1.9e-155 553.1 429 62.9
Peaxi162Scf00074g00136 Petunia axillaris HOM05D005744 ORTHO05D007503 3.2e-155 552.4 414 64.3
CsaV3_1G000590 Cucumis sativus L. HOM05D005744 ORTHO05D007503 4.2e-155 552.0 429 63.4
BraA03t14628Z Brassica rapa HOM05D005744 ORTHO05D007503 9.4e-155 550.8 413 63.9
Psat5g140680 Pisum sativum HOM05D005744 ORTHO05D007503 9.4e-155 550.8 414 65.5
MSTRG.13706 Avicennia marina HOM05D005744 ORTHO05D007503 1.6e-154 550.1 414 63.5
Migut.E00304 Erythranthe guttata HOM05D005744 ORTHO05D007503 3.6e-154 548.9 414 65.0
ECA232G3603 Erigeron canadensis HOM05D005744 ORTHO05D007503 4.7e-154 548.5 420 64.3
Phvul.009G166600 Phaseolus vulgaris HOM05D005744 ORTHO05D007503 6.1e-154 548.1 428 65.4
CARHR232280 Cardamine hirsuta HOM05D005744 ORTHO05D007503 1.8e-153 546.6 411 63.0
Lj1g0015277 Lotus japonicus HOM05D005744 ORTHO05D007503 1.8e-153 546.6 414 64.0
EL10As4g23384 Beta vulgaris HOM05D005744 ORTHO05D007503 3.0e-153 545.8 418 63.6
BcaC06g32852 Brassica carinata HOM05D005744 ORTHO05D007503 4.0e-153 545.4 413 63.0
A03p55610 Brassica napus HOM05D005744 ORTHO05D007503 6.8e-153 544.7 413 63.4
CDE05G2332 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 6.8e-153 544.7 412 63.3
VMungo1309G1043 Vigna mungo HOM05D005744 ORTHO05D007503 1.5e-152 543.5 424 65.8
BolC7t45875H Brassica oleracea HOM05D005744 ORTHO05D007503 3.4e-152 542.3 413 62.7
AL7G28320 Arabidopsis lyrata HOM05D005744 ORTHO05D007503 5.7e-152 541.6 414 62.3
C07p53850 Brassica napus HOM05D005744 ORTHO05D007503 5.7e-152 541.6 413 62.7
PGR044G2189 Punica granatum HOM05D005744 ORTHO05D007503 9.8e-152 540.8 377 69.0
TPR.G26152 Trifolium pratense HOM05D005744 ORTHO05D007503 9.8e-152 540.8 415 64.8
Sp7g22860 Schrenkiella parvula HOM05D005744 ORTHO05D007503 3.7e-151 538.9 413 61.7
Carub.0007s1619 Capsella rubella HOM05D005744 ORTHO05D007503 3.1e-150 535.8 411 62.0
Nitab4.5_0002720g0090 Nicotiana tabacum HOM05D005744 ORTHO05D007503 3.1e-150 535.8 451 60.1
PGSC0003DMG400012114 Solanum tuberosum HOM05D005744 ORTHO05D007503 3.1e-150 535.8 419 62.5
Ah.02g114920 Amaranthus hybridus HOM05D005744 ORTHO05D007503 5.4e-150 535.0 445 62.9
Thhalv10025348m.g Eutrema salsugineum HOM05D005744 ORTHO05D007503 1.2e-149 533.9 396 62.1
Glyma.06G170500 Glycine max HOM05D005744 ORTHO05D007503 1.6e-149 533.5 414 63.8
Solyc08g083260.3 Solanum lycopersicum HOM05D005744 ORTHO05D007503 1.0e-148 530.8 423 61.7
Sopen08g031450 Solanum pennellii HOM05D005744 ORTHO05D007503 3.8e-148 528.9 423 61.5
Actinidia33099 Actinidia chinensis HOM05D005744 ORTHO05D007503 1.1e-147 527.3 336 71.7
RcHm_v2.0_Chr7g0190291 Rosa chinensis HOM05D005744 ORTHO05D007503 3.3e-147 525.8 411 64.5
TPR.G12158 Trifolium pratense HOM05D005744 ORTHO05D007503 3.3e-147 525.8 415 65.5
Haze_07221 Corylus avellana HOM05D005744 ORTHO05D007503 1.2e-146 523.9 481 59.5
Eucgr.K02730 Eucalyptus grandis HOM05D005744 ORTHO05D007503 1.2e-146 523.9 437 62.2
FAN18G3767 Fragaria x ananassa HOM05D005744 ORTHO05D007503 2.1e-146 523.1 411 65.9
Actinidia25578 Actinidia chinensis HOM05D005744 ORTHO05D007503 3.6e-146 522.3 375 69.1
FvH4_5g08230 Fragaria vesca HOM05D005744 ORTHO05D007503 8.0e-146 521.2 411 65.9
FAN08G2910 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.8e-145 520.0 411 65.2
Duzib205G1133 Durio zibethinus HOM05D005744 ORTHO05D007503 3.0e-145 519.2 415 61.9
SalBow5G0293 Salvia bowleyana HOM05D005744 ORTHO05D007503 5.2e-145 518.5 428 62.9
Os01g0101300 Oryza sativa ssp. japonica HOM05D005744 ORTHO05D007503 2.6e-144 516.2 414 62.8
vmacro19203 Vaccinium macrocarpon HOM05D005744 ORTHO05D007503 3.1e-142 509.2 468 56.0
AUR62025939 Chenopodium quinoa HOM05D005744 ORTHO05D007503 4.1e-142 508.8 387 64.1
AUR62029618 Chenopodium quinoa HOM05D005744 ORTHO05D007503 9.2e-142 507.7 384 63.3
Dinv11169 Davidia involucrata HOM05D005744 ORTHO05D007503 1.6e-141 506.9 415 61.4
FAN13G0489 Fragaria x ananassa HOM05D005744 ORTHO05D007503 6.6e-140 501.5 451 59.0
TAR629G2476 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-139 500.4 322 73.3
CAN.G567.98 Capsicum annuum HOM05D005744 ORTHO05D007503 9.5e-139 497.7 442 58.6
Lj9A478G92 Lonicera japonica HOM05D005744 ORTHO05D007503 3.2e-134 482.6 384 61.7
TAR633G0019 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.5e-131 473.8 304 70.4
RcHm_v2.0_Chr4g0409241 Rosa chinensis HOM05D005744 ORTHO05D007503 1.2e-130 470.7 425 57.9
Mapoly0024s0037 Marchantia polymorpha HOM05D005744 ORTHO05D007503 2.6e-128 463.0 407 56.0
Sc04g0000680 Simmondsia chinensis HOM05D005744 ORTHO05D007503 7.0e-126 454.9 299 68.6
Zm00001eb354570 Zea mays HOM05D005744 ORTHO05D007503 1.6e-125 453.8 414 58.0
SGA_v2.0_scaffold22G09828 Striga asiatica HOM05D005744 ORTHO05D007503 1.3e-124 450.7 413 56.2
AT4G24880 Arabidopsis thaliana HOM05D005744 ORTHO05D007503 1.7e-124 450.3 329 64.7
Glyma.04G195500 Glycine max HOM05D005744 ORTHO05D007503 3.9e-124 449.1 319 65.2
Cpa.g.sc2981.2 Carica papaya HOM05D005744 ORTHO05D007503 1.5e-123 447.2 304 70.1
Aa31LG7G10960 Aethionema arabicum HOM05D005744 ORTHO05D007503 1.9e-123 446.8 302 68.9
Pp3c8_11540 Physcomitrium patens HOM05D005744 ORTHO05D007503 4.0e-121 439.1 419 51.3
FAN07G2643 Fragaria x ananassa HOM05D005744 ORTHO05D007503 4.1e-118 429.1 328 63.1
SMO364G0648 Selaginella moellendorffii HOM05D005744 ORTHO05D007503 1.6e-117 427.2 419 51.3
FvH4_4g11820 Fragaria vesca HOM05D005744 ORTHO05D007503 1.3e-116 424.1 417 53.7
unitig_27.g25288 Utricularia gibba HOM05D005744 ORTHO05D007503 8.4e-111 404.8 412 50.2
SalBow5G5674 Salvia bowleyana HOM05D005744 ORTHO05D007503 1.5e-107 394.0 428 52.1
SEGI_05259 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 2.7e-101 373.2 316 57.6
FAN12G3536 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.5e-99 367.5 315 58.4
FAN12G3591 Fragaria x ananassa HOM05D005744 ORTHO05D007503 1.1e-94 351.3 292 58.9
Nitab4.5_0000479g0030 Nicotiana tabacum HOM05D005744 ORTHO05D007503 5.1e-92 342.4 272 62.5
SEGI_21905 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 3.8e-79 299.7 183 69.4
Eucgr.L02977 Eucalyptus grandis HOM05D005744 ORTHO05D007503 7.1e-78 295.4 272 61.8
MCO07G390 Micromonas commoda HOM05D005744 ORTHO05D007503 5.5e-70 269.2 453 36.0
AagrBONN_evm.TU.Sc2ySwM_344.2997 Anthoceros agrestis HOM05D005744 ORTHO05D007503 8.2e-66 255.4 218 52.3
SHI06365 Sapria himalayana HOM05D005744 ORTHO05D007503 7.2e-62 242.3 369 39.8
Cre16.g666000 Chlamydomonas reinhardtii HOM05D005744 ORTHO05D007503 2.6e-56 223.8 562 30.2
PRCOL_00001155 Prasinoderma coloniale HOM05D005744 ORTHO05D007503 4.7e-53 213.0 442 35.3
RcHm_v2.0_Chr4g0407951 Rosa chinensis HOM05D005744 ORTHO05D007503 7.7e-48 195.7 253 45.5
HanXRQChr10g0289761 Helianthus annuus HOM05D005744 ORTHO05D007503 1.2e-43 181.8 201 48.3
Lsat_1_v5_gn_8_77640 Lactuca sativa HOM05D005744 ORTHO05D007503 1.2e-43 181.8 115 72.2
COL.COLO4_31215 Corchorus olitorius HOM05D005744 ORTHO05D007503 2.0e-35 154.5 129 58.9
GSVIVG01008540001 Vitis vinifera HOM05D005744 ORTHO05D007503 7.5e-35 152.5 121 62.8
QL10p003231 Quercus lobata HOM05D005744 ORTHO05D007503 6.6e-31 139.4 117 56.4
CDE12G0192 Ceratophyllum demersum HOM05D005744 ORTHO05D007503 3.4e-27 127.1 130 53.8
RcHm_v2.0_Chr4g0407901 Rosa chinensis HOM05D005744 ORTHO05D007503 3.2e-25 120.6 256 35.9
Aa31LG7G10970 Aethionema arabicum HOM05D005744 ORTHO05D007503 8.9e-20 102.4 117 52.1
Lsat_1_v5_gn_8_150141 Lactuca sativa HOM05D005744 ORTHO05D048266 3.2e-17 94.0 118 40.7
TAR629G1577 Trochodendron aralioides HOM05D005744 ORTHO05D007503 1.6e-13 81.6 60 65.0
CDE05G3540 Ceratophyllum demersum HOM05D005744 ORTHO05D130478 5.8e-11 73.2 94 46.8
SEGI_17145 Sequoiadendron giganteum HOM05D005744 ORTHO05D007503 9.8e-11 72.4 62 61.3
HanXRQChr10g0289791 Helianthus annuus HOM05D005744 ORTHO05D048266 9.5e-06 55.8 39 59.0


User provided reference genes

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