Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5642 Papaver somniferum HOM05D004011 ORTHO05D005290 1.0e-276 956.1 464 100.0
PSO423G0236 Papaver somniferum HOM05D004011 ORTHO05D005290 7.7e-200 700.7 460 75.0
TAR622G0281 Trochodendron aralioides HOM05D004011 ORTHO05D005290 2.3e-164 582.8 469 60.3
Aqoxy3G03233 Aquilegia oxysepala HOM05D004011 ORTHO05D005290 6.4e-162 574.7 464 60.1
Prupe.1G265000 Prunus persica HOM05D004011 ORTHO05D005290 8.6e-159 564.3 469 58.2
RcHm_v2.0_Chr4g0445221 Rosa chinensis HOM05D004011 ORTHO05D005290 8.6e-159 564.3 469 58.0
Duzib251G0283 Durio zibethinus HOM05D004011 ORTHO05D005290 4.7e-157 558.5 469 58.4
Lj2g0011655 Lotus japonicus HOM05D004011 ORTHO05D005290 4.7e-157 558.5 465 57.4
Lalb_Chr09g0326751 Lupinus albus HOM05D004011 ORTHO05D005290 1.1e-156 557.4 469 57.4
Thecc.02G234800 Theobroma cacao HOM05D004011 ORTHO05D005290 1.8e-156 556.6 469 58.4
QL03p066429 Quercus lobata HOM05D004011 ORTHO05D005290 4.0e-156 555.4 469 58.6
CANSAT01G0183 Cannabis sativa HOM05D004011 ORTHO05D005290 1.5e-155 553.5 469 57.1
Ciclev10031073m.g Citrus clementina HOM05D004011 ORTHO05D005290 2.0e-155 553.1 451 58.5
GSVIVG01020097001 Vitis vinifera HOM05D004011 ORTHO05D005290 2.6e-155 552.7 467 56.5
COL.COLO4_36215 Corchorus olitorius HOM05D004011 ORTHO05D005290 5.8e-155 551.6 464 57.5
Manes.01G192600 Manihot esculenta HOM05D004011 ORTHO05D005290 5.8e-155 551.6 469 55.9
Potri.010G035400 Populus trichocarpa HOM05D004011 ORTHO05D005290 3.7e-154 548.9 470 56.6
MD16G1081000 Malus domestica HOM05D004011 ORTHO05D005290 6.4e-154 548.1 464 56.5
Eucgr.B03399 Eucalyptus grandis HOM05D004011 ORTHO05D005290 1.1e-153 547.4 469 56.7
CiPaw.05G142000 Carya illinoinensis HOM05D004011 ORTHO05D005290 1.9e-153 546.6 464 57.5
Lj3C1043T17 Lonicera japonica HOM05D004011 ORTHO05D005290 1.9e-153 546.6 463 57.0
Actinidia19850 Actinidia chinensis HOM05D004011 ORTHO05D005290 7.1e-153 544.7 467 56.3
CSS0048676 Camellia sinensis var. sinensis HOM05D004011 ORTHO05D005290 7.1e-153 544.7 463 57.2
TWI36G1736 Tripterygium wilfordii HOM05D004011 ORTHO05D005290 3.9e-151 538.9 470 56.0
CsaV3_5G032130 Cucumis sativus L. HOM05D004011 ORTHO05D005290 5.1e-151 538.5 464 55.0
FAN07G2799 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.6e-151 537.7 469 56.3
Gohir.D01G133600 Gossypium hirsutum HOM05D004011 ORTHO05D005290 3.3e-150 535.8 469 55.4
Ca_04688_v3 Cicer arietinum L. HOM05D004011 ORTHO05D005290 4.3e-150 535.4 470 56.4
VMungo1215G2281 Vigna mungo HOM05D004011 ORTHO05D005290 4.3e-150 535.4 465 54.8
FvH4_4g35610 Fragaria vesca HOM05D004011 ORTHO05D005290 1.2e-149 533.9 469 55.4
Gorai.002G165100 Gossypium raimondii HOM05D004011 ORTHO05D005290 1.2e-149 533.9 473 55.6
FAN12G0945 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.7e-149 531.9 469 55.2
Glyma.01G040300 Glycine max HOM05D004011 ORTHO05D005290 6.2e-149 531.6 470 54.5
Gohir.A01G142100 Gossypium hirsutum HOM05D004011 ORTHO05D005290 6.2e-149 531.6 447 56.6
FAN22G2312 Fragaria x ananassa HOM05D004011 ORTHO05D005290 8.1e-149 531.2 469 55.0
CAN.G27.36 Capsicum annuum HOM05D004011 ORTHO05D005290 1.1e-148 530.8 469 55.2
Phvul.002G080300 Phaseolus vulgaris HOM05D004011 ORTHO05D005290 1.8e-148 530.0 465 55.1
arahy.Tifrunner.gnm1.ann1.XM7912 Arachis hypogaea HOM05D004011 ORTHO05D005290 3.1e-148 529.3 474 54.0
AUR62026479 Chenopodium quinoa HOM05D004011 ORTHO05D005290 4.0e-148 528.9 464 54.1
FAN17G1440 Fragaria x ananassa HOM05D004011 ORTHO05D005290 4.0e-148 528.9 464 55.8
ClCG05G024760 Citrullus lanatus HOM05D004011 ORTHO05D005290 6.8e-148 528.1 464 54.5
Lsat_1_v5_gn_8_163421 Lactuca sativa HOM05D004011 ORTHO05D005290 1.2e-147 527.3 462 55.6
EL10Ac6g13125 Beta vulgaris HOM05D004011 ORTHO05D005290 2.6e-147 526.2 464 54.5
MELO3C012048.2 Cucumis melo HOM05D004011 ORTHO05D005290 5.8e-147 525.0 464 53.7
Migut.L01360 Erythranthe guttata HOM05D004011 ORTHO05D005290 2.2e-146 523.1 470 56.2
Cfa009061 Carpinus fangiana HOM05D004011 ORTHO05D005290 2.9e-146 522.7 469 56.7
Sabra10G0029400 Salix brachista HOM05D004011 ORTHO05D005290 4.9e-146 521.9 490 53.1
Psat2g115960 Pisum sativum HOM05D004011 ORTHO05D005290 6.4e-146 521.5 464 55.6
Sed0020834 Sechium edule HOM05D004011 ORTHO05D005290 6.4e-146 521.5 469 53.1
Medtr5g037400 Medicago truncatula HOM05D004011 ORTHO05D005290 1.1e-145 520.8 469 56.1
TPR.G26722 Trifolium pratense HOM05D004011 ORTHO05D005290 1.4e-145 520.4 468 55.8
Sopen05g002700 Solanum pennellii HOM05D004011 ORTHO05D005290 3.2e-145 519.2 463 54.2
Solyc05g006760.4 Solanum lycopersicum HOM05D004011 ORTHO05D005290 7.1e-145 518.1 463 54.4
Hund05926 Selenicereus undatus HOM05D004011 ORTHO05D005290 9.3e-145 517.7 468 53.0
CDE06G1386 Ceratophyllum demersum HOM05D004011 ORTHO05D005290 1.2e-144 517.3 463 53.6
Nitab4.5_0001726g0090 Nicotiana tabacum HOM05D004011 ORTHO05D005290 1.2e-144 517.3 469 53.7
AL1G38330 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 1.3e-143 513.8 466 53.2
Carub.0001s2380 Capsella rubella HOM05D004011 ORTHO05D005290 3.0e-143 512.7 466 52.6
Nitab4.5_0000408g0060 Nicotiana tabacum HOM05D004011 ORTHO05D005290 3.0e-143 512.7 469 53.1
Atru.chr11.1880 Acer truncatum HOM05D004011 ORTHO05D005290 3.9e-143 512.3 416 59.4
AT1G27150 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 8.7e-143 511.1 466 52.4
Glyma.02G024500 Glycine max HOM05D004011 ORTHO05D005290 1.5e-142 510.4 439 55.6
Oeu028543.1 Olea europaea HOM05D004011 ORTHO05D005290 1.5e-142 510.4 467 54.4
HanXRQChr12g0371081 Helianthus annuus HOM05D004011 ORTHO05D005290 5.6e-142 508.4 464 54.1
Nn3g17098 Nelumbo nucifera HOM05D004011 ORTHO05D005290 7.3e-142 508.1 464 55.8
ATR0001G025 Amborella trichopoda HOM05D004011 ORTHO05D005290 2.1e-141 506.5 442 55.0
BraA09t39549Z Brassica rapa HOM05D004011 ORTHO05D005290 2.4e-140 503.1 467 52.7
Cc11_g13690 Coffea canephora HOM05D004011 ORTHO05D005290 5.3e-140 501.9 443 56.0
Aa31LG7G8050 Aethionema arabicum HOM05D004011 ORTHO05D005290 6.9e-140 501.5 460 53.5
Cc11_g13670 Coffea canephora HOM05D004011 ORTHO05D005290 6.9e-140 501.5 469 53.9
BcaB03g14114 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-139 500.4 467 52.7
Os03g0689900 Oryza sativa ssp. japonica HOM05D004011 ORTHO05D005290 1.5e-139 500.4 464 50.9
A09p40530 Brassica napus HOM05D004011 ORTHO05D005290 3.4e-139 499.2 467 52.7
Thhalv10007555m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 2.9e-138 496.1 461 52.3
Peaxi162Scf00209g00842 Petunia axillaris HOM05D004011 ORTHO05D005290 1.1e-137 494.2 415 57.3
BraA08t34710Z Brassica rapa HOM05D004011 ORTHO05D005290 1.9e-137 493.4 459 51.2
BcaC05g26340 Brassica carinata HOM05D004011 ORTHO05D005290 2.4e-137 493.0 467 51.4
BcaC07g39250 Brassica carinata HOM05D004011 ORTHO05D005290 3.2e-137 492.7 459 51.4
Sp1g21670 Schrenkiella parvula HOM05D004011 ORTHO05D005290 3.2e-137 492.7 459 51.4
BolC8t49891H Brassica oleracea HOM05D004011 ORTHO05D005290 5.4e-137 491.9 459 51.2
BcaB03g11978 Brassica carinata HOM05D004011 ORTHO05D005290 7.1e-137 491.5 459 51.4
BcaC06g35087 Brassica carinata HOM05D004011 ORTHO05D005290 1.2e-136 490.7 462 53.0
C07p20000 Brassica napus HOM05D004011 ORTHO05D005290 2.1e-136 490.0 462 53.0
BolC7t42519H Brassica oleracea HOM05D004011 ORTHO05D005290 2.1e-136 490.0 462 53.0
Zm00001eb053520 Zea mays HOM05D004011 ORTHO05D005290 7.9e-136 488.0 454 50.2
BraA07t29109Z Brassica rapa HOM05D004011 ORTHO05D005290 1.7e-135 486.9 464 52.4
Sp1g21620 Schrenkiella parvula HOM05D004011 ORTHO05D005290 1.7e-135 486.9 462 51.9
A07p13510 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-135 486.5 462 52.6
BcaB07g32390 Brassica carinata HOM05D004011 ORTHO05D005290 5.6e-134 481.9 461 52.3
A07p13370 Brassica napus HOM05D004011 ORTHO05D005290 5.6e-134 481.9 462 51.9
ECA248G0235 Erigeron canadensis HOM05D004011 ORTHO05D005290 7.4e-134 481.5 445 52.8
CARHR024790 Cardamine hirsuta HOM05D004011 ORTHO05D005290 1.3e-133 480.7 459 51.4
DCAR_031068 Daucus carota HOM05D004011 ORTHO05D005290 4.8e-133 478.8 435 54.7
C08p22550 Brassica napus HOM05D004011 ORTHO05D005290 6.2e-133 478.4 435 52.4
SalBow2G3145 Salvia bowleyana HOM05D004011 ORTHO05D005290 3.1e-132 476.1 464 52.6
CARHR024720 Cardamine hirsuta HOM05D004011 ORTHO05D005290 5.3e-132 475.3 466 50.4
THA.LOC104822089 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.5e-131 473.8 464 49.1
unitig_22.g6920 Utricularia gibba HOM05D004011 ORTHO05D005290 1.5e-131 473.8 463 51.8
PGSC0003DMG400022621 Solanum tuberosum HOM05D004011 ORTHO05D005290 2.0e-131 473.4 457 51.4
THA.LOC104822935 Tarenaya hassleriana HOM05D004011 ORTHO05D005290 1.7e-130 470.3 459 49.9
A08p27740 Brassica napus HOM05D004011 ORTHO05D005290 2.4e-129 466.5 431 51.7
MBI01_g01221_MAGBIO Magnolia biondii HOM05D004011 ORTHO05D005290 3.2e-129 466.1 424 54.5
BcaB03g14111 Brassica carinata HOM05D004011 ORTHO05D005290 1.5e-126 457.2 485 48.7
AT1G27110 Arabidopsis thaliana HOM05D004011 ORTHO05D005290 4.3e-126 455.7 459 50.3
C05p23640 Brassica napus HOM05D004011 ORTHO05D005290 8.1e-125 451.4 438 50.0
Carub.0001s2386 Capsella rubella HOM05D004011 ORTHO05D005290 2.4e-124 449.9 436 49.3
BolC5t31078H Brassica oleracea HOM05D004011 ORTHO05D005290 6.9e-124 448.4 463 48.8
arahy.Tifrunner.gnm1.ann1.DHW1RD Arachis hypogaea HOM05D004011 ORTHO05D005290 3.8e-122 442.6 460 48.0
arahy.Tifrunner.gnm1.ann1.SQ07EG Arachis hypogaea HOM05D004011 ORTHO05D005290 1.0e-119 434.5 496 45.4
vmacro01220 Vaccinium macrocarpon HOM05D004011 ORTHO05D005290 3.0e-119 433.0 344 60.5
Haze_12040 Corylus avellana HOM05D004011 ORTHO05D005290 5.3e-116 422.2 491 47.9
BolC5t31073H Brassica oleracea HOM05D004011 ORTHO05D005290 7.6e-115 418.3 389 51.9
BcaC07g37560 Brassica carinata HOM05D004011 ORTHO05D005290 6.5e-114 415.2 448 47.8
Thhalv10007979m.g Eutrema salsugineum HOM05D004011 ORTHO05D005290 1.3e-111 407.5 364 53.6
BolC8t47901H Brassica oleracea HOM05D004011 ORTHO05D005290 6.7e-111 405.2 466 46.1
Sc11g0001560 Simmondsia chinensis HOM05D004011 ORTHO05D005290 1.5e-110 404.1 353 54.7
SGA_v2.0_scaffold166G38295 Striga asiatica HOM05D004011 ORTHO05D005290 1.2e-104 384.4 505 44.4
Cpa.g.sc5.292 Carica papaya HOM05D004011 ORTHO05D005290 2.0e-102 377.1 465 45.2
AUR62026286 Chenopodium quinoa HOM05D004011 ORTHO05D005290 7.7e-99 365.2 502 41.2
A08p08630 Brassica napus HOM05D004011 ORTHO05D005290 1.2e-96 357.8 448 45.3
Pp3c17_17430 Physcomitrium patens HOM05D004011 ORTHO05D005290 1.2e-96 357.8 464 41.8
Hma1.2p1_1045F.1_g251340 Hydrangea macrophylla HOM05D004011 ORTHO05D005290 3.0e-95 353.2 428 45.1
SMO331G0048 Selaginella moellendorffii HOM05D004011 ORTHO05D005290 4.4e-86 322.8 464 38.1
Mapoly0042s0014 Marchantia polymorpha HOM05D004011 ORTHO05D005290 8.3e-77 292.0 416 39.9
Atru.chr9.2355 Acer truncatum HOM05D004011 ORTHO05D005290 2.3e-66 257.3 233 54.9
Actinidia08203 Actinidia chinensis HOM05D004011 ORTHO05D005290 8.0e-64 248.8 190 60.0
arahy.Tifrunner.gnm1.ann1.NNWV08 Arachis hypogaea HOM05D004011 ORTHO05D005290 5.4e-60 236.1 240 47.9
Atru.chr5.3340 Acer truncatum HOM05D004011 ORTHO05D005290 1.9e-57 227.6 201 55.7
Atru.chr1.621 Acer truncatum HOM05D004011 ORTHO05D005290 7.3e-57 225.7 201 55.2
Medtr5g037420 Medicago truncatula HOM05D004011 ORTHO05D005290 2.5e-49 200.7 142 64.8
Actinidia08204 Actinidia chinensis HOM05D004011 ORTHO05D005290 7.3e-49 199.1 197 50.8
BraA08t32877Z Brassica rapa HOM05D004011 ORTHO05D005290 9.8e-46 188.7 227 46.7
BolC7t42515H Brassica oleracea HOM05D004011 ORTHO05D005290 1.6e-40 171.4 223 40.8
C05p23600 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-38 162.5 311 34.4
C07p19960 Brassica napus HOM05D004011 ORTHO05D005290 7.6e-38 162.5 219 39.7
TPR.G21863 Trifolium pratense HOM05D004011 ORTHO05D005290 6.4e-37 159.5 109 64.2
A07p13340 Brassica napus HOM05D004011 ORTHO05D005290 1.9e-36 157.9 377 30.2
Atru.chr10.818 Acer truncatum HOM05D004011 ORTHO05D005290 1.0e-34 152.1 156 48.7
Atru.chr2.3843 Acer truncatum HOM05D004011 ORTHO05D005290 7.1e-28 129.4 75 74.7
TAR636G0334 Trochodendron aralioides HOM05D004011 ORTHO05D005290 6.6e-26 122.9 83 63.9
AL1G38380 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 6.2e-24 116.3 116 50.0
BraA07t29105Z Brassica rapa HOM05D004011 ORTHO05D005290 1.5e-22 111.7 132 43.9
BolC7t42512H Brassica oleracea HOM05D004011 ORTHO05D005290 2.0e-22 111.3 105 50.5
BolC5t31079H Brassica oleracea HOM05D004011 ORTHO05D005290 1.3e-21 108.6 76 57.9
C07p19930 Brassica napus HOM05D004011 ORTHO05D005290 2.2e-21 107.8 102 51.0
BolC5t31070H Brassica oleracea HOM05D004011 ORTHO05D005290 2.9e-21 107.5 76 57.9
BcaC06g35090 Brassica carinata HOM05D004011 ORTHO05D005290 1.1e-20 105.5 179 34.1
BcaC06g35091 Brassica carinata HOM05D004011 ORTHO05D005290 2.7e-19 100.9 214 32.2
RcHm_v2.0_Chr7g0206221 Rosa chinensis HOM05D004011 ORTHO05D005290 1.3e-18 98.6 54 72.2
BolC5t31074H Brassica oleracea HOM05D004011 ORTHO05D005290 3.3e-17 94.0 64 59.4
AL1G38370 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 4.3e-17 93.6 110 44.5
BolC7t42514H Brassica oleracea HOM05D004011 ORTHO05D005290 5.6e-17 93.2 130 40.0
Atru.chr1.3881 Acer truncatum HOM05D004011 ORTHO05D023183 9.6e-17 92.4 56 73.2
BolC5t31071H Brassica oleracea HOM05D004011 ORTHO05D005290 2.8e-16 90.9 145 37.9
BolC5t31081H Brassica oleracea HOM05D004011 ORTHO05D005290 1.1e-15 89.0 145 37.2
Duzib268G0988 Durio zibethinus HOM05D004011 ORTHO05D005290 1.2e-14 85.5 72 58.3
AL2G16820 Arabidopsis lyrata HOM05D004011 ORTHO05D005290 2.0e-14 84.7 56 64.3
SEGI_16255 Sequoiadendron giganteum HOM05D004011 ORTHO05D005290 2.9e-13 80.9 116 39.7
BcaB04g18716 Brassica carinata HOM05D000040 ORTHO05D005442 2.4e-12 77.8 81 50.6
A07p13600 Brassica napus HOM05D004011 ORTHO05D100703 3.5e-11 73.9 53 58.5
C07p19950 Brassica napus HOM05D004011 ORTHO05D005290 1.0e-10 72.4 133 36.1
A07p13320 Brassica napus HOM05D004011 ORTHO05D005290 2.3e-10 71.2 53 58.5
SMO203G0050 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.0e-10 70.9 180 27.2
Cfa021096 Carpinus fangiana HOM05D004011 ORTHO05D000073 3.9e-10 70.5 91 42.9
SMO252G0024 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 3.9e-10 70.5 170 27.1
CAN.G1697.3 Capsicum annuum HOM05D013442 ORTHO05D016868 8.7e-10 69.3 131 30.5
BcaB07g32391 Brassica carinata HOM05D026641 ORTHO05D027156 1.9e-09 68.2 98 38.8
SMO110G0005 Selaginella moellendorffii HOM05D004011 ORTHO05D023129 7.4e-09 66.2 170 25.9
Cc11_g13680 Coffea canephora HOM05D004011 ORTHO05D005290 1.6e-08 65.1 79 43.0
BraA07t29103Z Brassica rapa HOM05D001102 ORTHO05D021602 1.5e-06 58.5 40 57.5


User provided reference genes

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