Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5532 Papaver somniferum HOM05D003563 ORTHO05D015420 4.5e-76 287.7 135 100.0
PSO210G3800 Papaver somniferum HOM05D003563 ORTHO05D015420 7.3e-50 200.7 105 92.4
PSO675G6005 Papaver somniferum HOM05D003563 ORTHO05D015420 1.9e-42 176.0 96 84.4
PSO478G3448 Papaver somniferum HOM05D003563 ORTHO05D015420 4.7e-41 171.4 85 89.4
PSO541G4717 Papaver somniferum HOM05D003563 ORTHO05D005325 3.4e-39 165.2 89 85.4
PSO675G8753 Papaver somniferum HOM05D003563 ORTHO05D005325 3.4e-39 165.2 89 85.4
TAR381G1659 Trochodendron aralioides HOM05D003563 ORTHO05D005325 4.4e-39 164.9 85 89.4
Aqoxy6G01090 Aquilegia oxysepala HOM05D003563 ORTHO05D005325 1.7e-38 162.9 85 87.1
Ca_04241_v3 Cicer arietinum L. HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
MELO3C010936.2 Cucumis melo HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
CsaV3_2G028640 Cucumis sativus L. HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
Migut.C00716 Erythranthe guttata HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
Medtr6g009330 Medicago truncatula HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
GSVIVG01009697001 Vitis vinifera HOM05D003563 ORTHO05D005325 4.9e-38 161.4 89 84.3
Eucgr.F01561 Eucalyptus grandis HOM05D003563 ORTHO05D005325 6.4e-38 161.0 89 83.1
Ciclev10000722m.g Citrus clementina HOM05D003563 ORTHO05D005325 1.1e-37 160.2 89 83.1
Sed0015721 Sechium edule HOM05D003563 ORTHO05D005325 1.1e-37 160.2 89 83.1
Sed0018414 Sechium edule HOM05D003563 ORTHO05D005325 1.1e-37 160.2 89 83.1
Sc02g0006230 Simmondsia chinensis HOM05D003563 ORTHO05D005325 1.1e-37 160.2 89 83.1
COL.COLO4_26329 Corchorus olitorius HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 82.0
Duzib093G1625 Durio zibethinus HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 82.0
Glyma.04G032600 Glycine max HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 83.1
Gohir.D01G104300 Gossypium hirsutum HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 82.0
Gorai.002G128400 Gossypium raimondii HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 82.0
Psat1g077120 Pisum sativum HOM05D003563 ORTHO05D005325 1.4e-37 159.8 89 83.1
DCAR_020972 Daucus carota HOM05D003563 ORTHO05D005325 1.9e-37 159.5 85 87.1
Glyma.19G017200 Glycine max HOM05D003563 ORTHO05D005325 1.9e-37 159.5 89 83.1
Phvul.004G023500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 1.9e-37 159.5 89 83.1
Thecc.08G025500 Theobroma cacao HOM05D003563 ORTHO05D005325 1.9e-37 159.5 85 85.9
VMungo0464G1044 Vigna mungo HOM05D003563 ORTHO05D005325 1.9e-37 159.5 89 83.1
arahy.Tifrunner.gnm1.ann1.UW0ZL7 Arachis hypogaea HOM05D003563 ORTHO05D005325 2.4e-37 159.1 89 83.1
CDE05G1619 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 2.4e-37 159.1 89 83.1
TPR.G32590 Trifolium pratense HOM05D003563 ORTHO05D005325 2.4e-37 159.1 89 83.1
AT5G42740 Arabidopsis thaliana HOM05D003563 ORTHO05D005325 4.1e-37 158.3 89 80.9
Lalb_Chr23g0266621 Lupinus albus HOM05D003563 ORTHO05D005325 4.1e-37 158.3 84 85.7
THA.LOC104798643 Tarenaya hassleriana HOM05D003563 ORTHO05D005325 4.1e-37 158.3 89 80.9
MBI16_g36556_MAGBIO Magnolia biondii HOM05D003563 ORTHO05D005325 5.4e-37 157.9 89 82.0
TWI56G0595 Tripterygium wilfordii HOM05D003563 ORTHO05D005325 5.4e-37 157.9 89 80.9
CANSAT21G1125 Cannabis sativa HOM05D003563 ORTHO05D005325 7.1e-37 157.5 89 82.0
CiPaw.15G077500 Carya illinoinensis HOM05D003563 ORTHO05D005325 7.1e-37 157.5 85 85.9
Phvul.009G057500 Phaseolus vulgaris HOM05D003563 ORTHO05D005325 7.1e-37 157.5 89 82.0
VMungo1309G1719 Vigna mungo HOM05D003563 ORTHO05D005325 7.1e-37 157.5 89 82.0
arahy.Tifrunner.gnm1.ann1.7JQX15 Arachis hypogaea HOM05D003563 ORTHO05D005325 9.2e-37 157.1 86 84.9
CANSAT25G0144 Cannabis sativa HOM05D003563 ORTHO05D005325 9.2e-37 157.1 89 80.9
Cpa.g.sc36.68 Carica papaya HOM05D003563 ORTHO05D005325 9.2e-37 157.1 85 84.7
Os03g0776000 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 9.2e-37 157.1 85 85.9
SEGI_25229 Sequoiadendron giganteum HOM05D003563 ORTHO05D005325 9.2e-37 157.1 85 83.5
HPP92_002698 Vanilla planifolia HOM05D003563 ORTHO05D005325 9.2e-37 157.1 85 85.9
ATR0057G040 Amborella trichopoda HOM05D003563 ORTHO05D005325 1.2e-36 156.8 89 80.9
CARHR181650 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.2e-36 156.8 85 83.5
CARHR213980 Cardamine hirsuta HOM05D003563 ORTHO05D005325 1.2e-36 156.8 85 84.7
Gohir.A01G116000 Gossypium hirsutum HOM05D003563 ORTHO05D005325 1.6e-36 156.4 89 80.9
Nn1g05025 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.6e-36 156.4 85 84.7
Nn5g29576 Nelumbo nucifera HOM05D003563 ORTHO05D005325 1.6e-36 156.4 85 85.9
HPP92_002716 Vanilla planifolia HOM05D003563 ORTHO05D005325 2.1e-36 156.0 85 84.7
MSTRG.1282 Avicennia marina HOM05D003563 ORTHO05D005325 2.7e-36 155.6 85 84.7
BcaB07g31058 Brassica carinata HOM05D003563 ORTHO05D005325 2.7e-36 155.6 89 79.8
BcaC04g21978 Brassica carinata HOM05D003563 ORTHO05D005325 2.7e-36 155.6 89 79.8
C09p25230 Brassica napus HOM05D003563 ORTHO05D005325 2.7e-36 155.6 89 79.8
Lj1g0022254 Lotus japonicus HOM05D003563 ORTHO05D005325 2.7e-36 155.6 89 82.0
Manes.05G160800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.7e-36 155.6 85 84.7
Manes.18G027800 Manihot esculenta HOM05D003563 ORTHO05D005325 2.7e-36 155.6 85 84.7
Potri.008G118900 Populus trichocarpa HOM05D003563 ORTHO05D005325 2.7e-36 155.6 85 84.7
unitig_37.g12990 Utricularia gibba HOM05D003563 ORTHO05D005325 2.7e-36 155.6 85 84.7
PGR083G2760 Punica granatum HOM05D003563 ORTHO05D005325 3.5e-36 155.2 85 82.4
Dinv39412 Davidia involucrata HOM05D003563 ORTHO05D005325 4.6e-36 154.8 89 82.0
CSS0002435 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D005325 6.0e-36 154.5 89 79.8
Lj4A41G56 Lonicera japonica HOM05D003563 ORTHO05D005325 6.0e-36 154.5 84 85.7
Prupe.1G380500 Prunus persica HOM05D003563 ORTHO05D005325 6.0e-36 154.5 89 80.9
RcHm_v2.0_Chr6g0300881 Rosa chinensis HOM05D003563 ORTHO05D005325 6.0e-36 154.5 85 84.7
MSTRG.25165 Avicennia marina HOM05D003563 ORTHO05D005325 7.8e-36 154.1 85 83.5
Cfa018145 Carpinus fangiana HOM05D003563 ORTHO05D005325 7.8e-36 154.1 93 78.5
FvH4_2g39910 Fragaria vesca HOM05D003563 ORTHO05D005325 7.8e-36 154.1 85 83.5
Carub.0008s0621 Capsella rubella HOM05D003563 ORTHO05D005325 1.0e-35 153.7 85 82.4
MD15G1031400 Malus domestica HOM05D003563 ORTHO05D005325 1.0e-35 153.7 89 80.9
Os06g0256500 Oryza sativa ssp. japonica HOM05D003563 ORTHO05D005325 1.0e-35 153.7 85 84.7
Mapoly0034s0044 Marchantia polymorpha HOM05D003563 ORTHO05D005325 1.3e-35 153.3 87 79.3
SMO340G0102 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 1.3e-35 153.3 87 75.9
Sp2g07360 Schrenkiella parvula HOM05D003563 ORTHO05D005325 1.7e-35 152.9 89 78.7
Thhalv10003173m.g Eutrema salsugineum HOM05D003563 ORTHO05D005325 2.3e-35 152.5 84 83.3
HanXRQChr09g0268611 Helianthus annuus HOM05D003563 ORTHO05D005325 2.3e-35 152.5 84 84.5
MD08G1034600 Malus domestica HOM05D003563 ORTHO05D005325 2.3e-35 152.5 89 79.8
Solyc12g014380.3 Solanum lycopersicum HOM05D003563 ORTHO05D005325 3.0e-35 152.1 84 82.1
Sopen12g006150 Solanum pennellii HOM05D003563 ORTHO05D005325 3.0e-35 152.1 84 82.1
Zm00001eb059230 Zea mays HOM05D003563 ORTHO05D005325 3.0e-35 152.1 89 79.8
Lsat_1_v5_gn_4_119160 Lactuca sativa HOM05D003563 ORTHO05D005325 3.9e-35 151.8 84 83.3
ECA232G1124 Erigeron canadensis HOM05D003563 ORTHO05D005325 6.6e-35 151.0 84 83.3
AagrBONN_evm.TU.Sc2ySwM_228.405 Anthoceros agrestis HOM05D003563 ORTHO05D005325 1.9e-34 149.4 89 76.4
BolC9t55419H Brassica oleracea HOM05D003563 ORTHO05D005325 3.3e-34 148.7 96 74.0
Rhsim06G0034400 Rhododendron simsii HOM05D003563 ORTHO05D005325 3.3e-34 148.7 98 72.4
A09p19900 Brassica napus HOM05D003563 ORTHO05D005325 4.3e-34 148.3 97 73.2
MCO02G104 Micromonas commoda HOM05D003563 ORTHO05D005325 4.3e-34 148.3 88 75.0
SalBow7G2312 Salvia bowleyana HOM05D003563 ORTHO05D005325 5.6e-34 147.9 95 75.8
CBR_g3932 Chara braunii HOM05D003563 ORTHO05D005325 1.2e-33 146.7 85 74.1
AagrBONN_evm.TU.Sc2ySwM_344.3288 Anthoceros agrestis HOM05D003563 ORTHO05D005325 2.1e-33 146.0 87 74.7
BraA09t37600Z Brassica rapa HOM05D003563 ORTHO05D005325 4.7e-33 144.8 106 67.0
Cre03.g175400 Chlamydomonas reinhardtii HOM05D003563 ORTHO05D005325 6.2e-33 144.4 89 71.9
Pp3c25_1860 Physcomitrium patens HOM05D003563 ORTHO05D005325 6.2e-33 144.4 87 74.7
AagrBONN_evm.TU.Sc2ySwM_368.1410 Anthoceros agrestis HOM05D003563 ORTHO05D005325 8.1e-33 144.1 84 75.0
CBR_g52178 Chara braunii HOM05D003563 ORTHO05D005325 4.0e-32 141.7 85 71.8
SMO119G0154 Selaginella moellendorffii HOM05D003563 ORTHO05D005325 4.0e-32 141.7 86 73.3
Pp3c5_3820 Physcomitrium patens HOM05D003563 ORTHO05D005325 1.2e-31 140.2 85 74.1
Pp3c16_6380 Physcomitrium patens HOM05D003563 ORTHO05D005325 2.0e-31 139.4 85 71.8
Pp3c6_18070 Physcomitrium patens HOM05D003563 ORTHO05D005325 7.6e-31 137.5 87 71.3
CAN.G233.10 Capsicum annuum HOM05D003563 ORTHO05D005325 1.7e-30 136.3 84 75.0
PRCOL_00005031 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 6.4e-30 134.4 87 70.1
CDE11G0237 Ceratophyllum demersum HOM05D003563 ORTHO05D005325 3.2e-29 132.1 89 71.9
ClCG08G015170 Citrullus lanatus HOM05D003563 ORTHO05D005325 7.1e-29 131.0 76 78.9
Haze_07272 Corylus avellana HOM05D003563 ORTHO05D005325 3.5e-28 128.6 76 76.3
Atru.chr13.492 Acer truncatum HOM05D003563 ORTHO05D005325 1.3e-27 126.7 68 83.8
SGA_v2.0_scaffold54G19524 Striga asiatica HOM05D003563 ORTHO05D005325 1.7e-27 126.3 72 80.6
Glyma.06G032500 Glycine max HOM05D003563 ORTHO05D005325 3.0e-27 125.6 68 83.8
QL02p008438 Quercus lobata HOM05D003563 ORTHO05D005325 3.0e-27 125.6 68 83.8
Lj7C352G3 Lonicera japonica HOM05D003563 ORTHO05D005325 3.9e-27 125.2 71 81.7
EL10Ac5g11903 Beta vulgaris HOM05D003563 ORTHO05D005325 5.1e-27 124.8 76 75.0
AUR62027308 Chenopodium quinoa HOM05D003563 ORTHO05D005325 5.1e-27 124.8 76 75.0
AUR62007425 Chenopodium quinoa HOM05D003563 ORTHO05D005325 6.6e-27 124.4 76 73.7
FAN27G1814 Fragaria x ananassa HOM05D003563 ORTHO05D005325 8.7e-27 124.0 67 83.6
Dinv36074 Davidia involucrata HOM05D003563 ORTHO05D005325 1.1e-26 123.6 68 83.8
Hma1.2p1_0203F.1_g086419 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 1.5e-26 123.2 67 83.6
FAN15G3737 Fragaria x ananassa HOM05D003563 ORTHO05D005325 1.9e-26 122.9 72 77.8
Nitab4.5_0009269g0010 Nicotiana tabacum HOM05D003563 ORTHO05D005325 1.9e-26 122.9 71 78.9
Ah.02g117440 Amaranthus hybridus HOM05D003563 ORTHO05D005325 2.5e-26 122.5 76 73.7
vmacro21635 Vaccinium macrocarpon HOM05D003563 ORTHO05D005325 3.3e-26 122.1 87 64.4
Sabra08G0090300 Salix brachista HOM05D003563 ORTHO05D005325 5.6e-26 121.3 67 80.6
Cc10_g02970 Coffea canephora HOM05D003563 ORTHO05D005325 7.3e-26 120.9 67 79.1
Aa31LG9G12790 Aethionema arabicum HOM05D003563 ORTHO05D005325 1.6e-25 119.8 76 71.1
Peaxi162Scf00333g00512 Petunia axillaris HOM05D003563 ORTHO05D005325 1.6e-25 119.8 71 76.1
SHI08159 Sapria himalayana HOM05D003563 ORTHO05D005325 1.6e-25 119.8 72 75.0
Oeu029861.1 Olea europaea HOM05D003563 ORTHO05D005325 6.2e-25 117.9 64 82.8
CSS0015322 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 2.4e-24 115.9 62 85.5
FAN20G1254 Fragaria x ananassa HOM05D003563 ORTHO05D005325 2.4e-24 115.9 72 75.0
PRCOL_00005550 Prasinoderma coloniale HOM05D003563 ORTHO05D005325 2.2e-22 109.4 92 55.4
CSS0012340 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 3.8e-22 108.6 63 79.4
Hma1.2p1_0105F.1_g050879 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 3.2e-21 105.5 56 83.9
Hma1.2p1_0105F.1_g050870 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 4.2e-21 105.1 56 82.1
Hma1.2p1_0105F.1_g050873 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 4.2e-21 105.1 56 82.1
Hma1.2p1_0105F.1_g050876 Hydrangea macrophylla HOM05D003563 ORTHO05D005325 4.2e-21 105.1 56 82.1
GSVIVG01037334001 Vitis vinifera HOM05D003563 ORTHO05D015420 4.2e-21 105.1 62 79.0
Oeu049958.2 Olea europaea HOM05D003563 ORTHO05D005325 7.9e-20 100.9 123 46.3
Haze_26983 Corylus avellana HOM05D003563 ORTHO05D005325 9.0e-16 87.4 79 53.2
Hund14325 Selenicereus undatus HOM05D003563 ORTHO05D005325 1.9e-13 79.7 68 58.8
Cfa022173 Carpinus fangiana HOM05D003563 ORTHO05D005325 2.7e-12 75.9 80 45.0
CSS0026525 Camellia sinensis var. sinensis HOM05D003563 ORTHO05D015420 7.9e-12 74.3 67 55.2
BcaB07g31057 Brassica carinata HOM05D003563 ORTHO05D005325 1.3e-11 73.6 44 75.0
Haze_26669 Corylus avellana HOM05D003563 ORTHO05D005325 3.9e-11 72.0 81 37.0
QL02p008415 Quercus lobata HOM05D000526 ORTHO05D004783 6.7e-11 71.2 48 72.9
arahy.Tifrunner.gnm1.ann1.7VBG8A Arachis hypogaea HOM05D003563 ORTHO05D015420 8.2e-09 64.3 45 66.7
arahy.Tifrunner.gnm1.ann1.GIX57Y Arachis hypogaea HOM05D003563 ORTHO05D015420 8.2e-09 64.3 45 66.7
Actinidia15322 Actinidia chinensis HOM05D003563 ORTHO05D005325 3.1e-08 62.4 40 72.5
arahy.Tifrunner.gnm1.ann1.I4AQ4M Arachis hypogaea HOM05D003563 ORTHO05D015420 1.2e-07 60.5 38 68.4


User provided reference genes

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