Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5384 Papaver somniferum HOM05D005050 ORTHO05D006198 4.0e-210 734.6 389 100.0
PSO170G5110 Papaver somniferum HOM05D005050 ORTHO05D006198 1.4e-202 709.5 409 93.6
TAR628G0295 Trochodendron aralioides HOM05D005050 ORTHO05D006198 2.0e-137 493.0 413 70.2
Dinv19345 Davidia involucrata HOM05D005050 ORTHO05D006198 5.1e-128 461.8 407 66.1
Eucgr.G00618 Eucalyptus grandis HOM05D005050 ORTHO05D006198 1.1e-125 454.1 407 64.6
GSVIVG01029689001 Vitis vinifera HOM05D005050 ORTHO05D006198 2.3e-125 453.0 420 64.0
Duzib052G0527 Durio zibethinus HOM05D005050 ORTHO05D006198 2.6e-124 449.5 401 66.3
Actinidia39062 Actinidia chinensis HOM05D005050 ORTHO05D006198 3.4e-124 449.1 408 64.7
Gorai.002G001300 Gossypium raimondii HOM05D005050 ORTHO05D006198 5.8e-124 448.4 395 66.6
CSS0001826 Camellia sinensis var. sinensis HOM05D005050 ORTHO05D006198 7.6e-124 448.0 408 64.7
Gohir.A01G001100 Gossypium hirsutum HOM05D005050 ORTHO05D006198 9.9e-124 447.6 403 65.5
Thecc.02G041900 Theobroma cacao HOM05D005050 ORTHO05D006198 2.9e-123 446.0 405 65.4
Prupe.1G564400 Prunus persica HOM05D005050 ORTHO05D006198 6.4e-123 444.9 407 64.6
Cpa.g.sc2.30 Carica papaya HOM05D005050 ORTHO05D006198 1.4e-122 443.7 413 63.4
FAN13G0813 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.9e-122 443.4 410 64.1
MELO3C019500.2 Cucumis melo HOM05D005050 ORTHO05D006198 5.4e-122 441.8 405 65.2
Gohir.D01G000800 Gossypium hirsutum HOM05D005050 ORTHO05D006198 7.1e-122 441.4 395 65.6
RcHm_v2.0_Chr7g0223331 Rosa chinensis HOM05D005050 ORTHO05D006198 9.2e-122 441.0 409 64.3
CsaV3_3G018690 Cucumis sativus L. HOM05D005050 ORTHO05D006198 1.2e-121 440.7 405 64.4
PGR042G1149 Punica granatum HOM05D005050 ORTHO05D006198 2.7e-121 439.5 410 62.9
FAN04G2386 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.5e-121 439.1 410 63.9
FAN18G3347 Fragaria x ananassa HOM05D005050 ORTHO05D006198 3.5e-121 439.1 410 63.9
FvH4_5g29810 Fragaria vesca HOM05D005050 ORTHO05D006198 1.3e-120 437.2 410 63.9
Ciclev10001338m.g Citrus clementina HOM05D005050 ORTHO05D006198 1.7e-120 436.8 394 65.0
ClCG05G009900 Citrullus lanatus HOM05D005050 ORTHO05D006198 2.3e-120 436.4 403 64.5
Nn1g08554 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.3e-120 436.4 376 67.6
Cfa005552 Carpinus fangiana HOM05D005050 ORTHO05D006198 3.0e-120 436.0 412 63.1
HanXRQChr03g0066561 Helianthus annuus HOM05D005050 ORTHO05D006198 6.6e-120 434.9 409 63.3
CiPaw.05G042200 Carya illinoinensis HOM05D005050 ORTHO05D006198 3.3e-119 432.6 412 63.3
ECA240G2670 Erigeron canadensis HOM05D005050 ORTHO05D006198 5.6e-119 431.8 402 63.4
Sed0002635 Sechium edule HOM05D005050 ORTHO05D006198 1.6e-118 430.3 407 63.4
Lsat_1_v5_gn_9_116221 Lactuca sativa HOM05D005050 ORTHO05D006198 6.2e-118 428.3 420 63.1
Sed0013576 Sechium edule HOM05D005050 ORTHO05D006198 1.8e-117 426.8 399 64.4
QL11p019153 Quercus lobata HOM05D005050 ORTHO05D006198 3.1e-117 426.0 412 62.4
MSTRG.16540 Avicennia marina HOM05D005050 ORTHO05D006198 4.0e-117 425.6 409 63.3
MD15G1419700 Malus domestica HOM05D005050 ORTHO05D006198 1.5e-116 423.7 433 59.6
TWI59G1202 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 5.8e-116 421.8 415 61.4
Cc02_g22180 Coffea canephora HOM05D005050 ORTHO05D006198 2.2e-115 419.9 413 62.7
MD08G1227300 Malus domestica HOM05D005050 ORTHO05D006198 2.2e-115 419.9 454 57.5
Rhsim11G0132400 Rhododendron simsii HOM05D005050 ORTHO05D006198 2.2e-115 419.9 430 61.4
Nn5g27962 Nelumbo nucifera HOM05D005050 ORTHO05D006198 2.9e-115 419.5 413 63.2
Manes.10G132900 Manihot esculenta HOM05D005050 ORTHO05D006198 1.1e-114 417.5 411 62.8
arahy.Tifrunner.gnm1.ann1.X2Y1CG Arachis hypogaea HOM05D005050 ORTHO05D006198 9.3e-114 414.5 407 63.1
VMungo0251G1671 Vigna mungo HOM05D005050 ORTHO05D006198 1.6e-113 413.7 410 63.2
arahy.Tifrunner.gnm1.ann1.V19TN9 Arachis hypogaea HOM05D005050 ORTHO05D006198 3.5e-113 412.5 409 62.8
MBI06_g01048_MAGBIO Magnolia biondii HOM05D005050 ORTHO05D006198 4.6e-113 412.1 411 62.3
Lj6g0001640 Lotus japonicus HOM05D005050 ORTHO05D006198 1.3e-112 410.6 413 62.0
Aqoxy5G02481 Aquilegia oxysepala HOM05D005050 ORTHO05D006198 2.3e-112 409.8 418 61.5
CANSAT11G1507 Cannabis sativa HOM05D005050 ORTHO05D006198 2.3e-112 409.8 397 62.5
Lalb_Chr12g0208631 Lupinus albus HOM05D005050 ORTHO05D006198 3.9e-112 409.1 379 64.4
Glyma.15G048700 Glycine max HOM05D005050 ORTHO05D006198 1.1e-111 407.5 378 66.7
Phvul.006G211700 Phaseolus vulgaris HOM05D005050 ORTHO05D006198 2.5e-111 406.4 411 62.0
SGA_v2.0_scaffold1G00335 Striga asiatica HOM05D005050 ORTHO05D006198 2.1e-110 403.3 426 58.9
TWI14G0535 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 2.1e-110 403.3 415 60.7
Atru.chr6.1005 Acer truncatum HOM05D005050 ORTHO05D006198 3.6e-110 402.5 413 61.7
Medtr2g007800 Medicago truncatula HOM05D005050 ORTHO05D006198 6.2e-110 401.7 410 61.2
Hma1.2p1_0557F.1_g178270 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.4e-109 400.6 408 61.0
COL.COLO4_17901 Corchorus olitorius HOM05D005050 ORTHO05D006198 3.1e-109 399.4 371 64.2
CDE12G0224 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 4.0e-109 399.1 405 64.2
Glyma.08G184100 Glycine max HOM05D005050 ORTHO05D006198 1.5e-108 397.1 392 62.5
Hund13068 Selenicereus undatus HOM05D005050 ORTHO05D006198 2.0e-108 396.7 404 60.6
HPP92_002179 Vanilla planifolia HOM05D005050 ORTHO05D006198 2.6e-108 396.4 401 60.3
AT1G15200 Arabidopsis thaliana HOM05D005050 ORTHO05D006198 3.4e-108 396.0 407 59.2
TPR.G2134 Trifolium pratense HOM05D005050 ORTHO05D006198 5.8e-108 395.2 405 60.7
Carub.0001s1495 Capsella rubella HOM05D005050 ORTHO05D006198 9.9e-108 394.4 407 59.5
FAN08G2278 Fragaria x ananassa HOM05D005050 ORTHO05D006198 1.7e-107 393.7 410 59.0
Sabra01G0160800 Salix brachista HOM05D005050 ORTHO05D006198 2.9e-107 392.9 410 60.2
HPP92_002226 Vanilla planifolia HOM05D005050 ORTHO05D006198 3.8e-107 392.5 400 60.2
TWI23G0447 Tripterygium wilfordii HOM05D005050 ORTHO05D006198 4.9e-107 392.1 410 58.0
AUR62025851 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.2e-106 389.4 400 57.5
BcaB02g06585 Brassica carinata HOM05D005050 ORTHO05D006198 5.1e-104 382.1 412 57.8
Migut.B00660 Erythranthe guttata HOM05D005050 ORTHO05D006198 5.1e-104 382.1 394 58.4
arahy.Tifrunner.gnm1.ann1.UX2R4L Arachis hypogaea HOM05D005050 ORTHO05D006198 1.5e-103 380.6 403 59.6
A06p11180 Brassica napus HOM05D005050 ORTHO05D006198 1.9e-103 380.2 411 58.2
TAR161G0004 Trochodendron aralioides HOM05D005050 ORTHO05D006198 5.6e-103 378.6 270 77.4
Sp1g13510 Schrenkiella parvula HOM05D005050 ORTHO05D006198 2.8e-102 376.3 416 56.5
AL1G27280 Arabidopsis lyrata HOM05D005050 ORTHO05D006198 6.2e-102 375.2 436 55.0
PGSC0003DMG400029778 Solanum tuberosum HOM05D005050 ORTHO05D006198 1.4e-101 374.0 409 58.2
Duzib132G0934 Durio zibethinus HOM05D005050 ORTHO05D006198 2.4e-101 373.2 386 59.6
Thhalv10007720m.g Eutrema salsugineum HOM05D005050 ORTHO05D006198 4.0e-101 372.5 371 61.5
CiPaw.06G149400 Carya illinoinensis HOM05D005050 ORTHO05D006198 9.0e-101 371.3 384 61.2
BcaC05g25448 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-100 369.8 389 58.6
C05p13300 Brassica napus HOM05D005050 ORTHO05D006198 2.6e-100 369.8 389 58.6
THA.LOC104805935 Tarenaya hassleriana HOM05D005050 ORTHO05D006198 3.4e-100 369.4 375 61.3
Solyc01g104560.3 Solanum lycopersicum HOM05D005050 ORTHO05D006198 1.7e-99 367.1 406 57.9
arahy.Tifrunner.gnm1.ann1.HMQ04Z Arachis hypogaea HOM05D005050 ORTHO05D006198 3.8e-99 365.9 398 58.0
Hma1.2p1_0557F.1_g178260 Hydrangea macrophylla HOM05D005050 ORTHO05D006198 1.4e-98 364.0 480 51.7
DCAR_029238 Daucus carota HOM05D005050 ORTHO05D006198 2.1e-97 360.1 379 58.0
CAN.G1352.15 Capsicum annuum HOM05D005050 ORTHO05D006198 6.0e-97 358.6 406 56.4
ATR0121G012 Amborella trichopoda HOM05D005050 ORTHO05D006198 5.1e-96 355.5 395 58.0
Sopen01g047070 Solanum pennellii HOM05D005050 ORTHO05D006198 4.0e-93 345.9 406 55.7
EL10Ac2g03230 Beta vulgaris HOM05D005050 ORTHO05D006198 6.9e-93 345.1 396 54.5
Nitab4.5_0003071g0060 Nicotiana tabacum HOM05D005050 ORTHO05D006198 1.2e-92 344.4 408 54.9
Potri.003G021900 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.5e-92 344.0 401 55.1
SalBow5G1811 Salvia bowleyana HOM05D005050 ORTHO05D006198 1.0e-91 341.3 410 53.9
SalBow5G5549 Salvia bowleyana HOM05D005050 ORTHO05D006198 2.2e-91 340.1 410 53.7
Ah.10g032530 Amaranthus hybridus HOM05D005050 ORTHO05D006198 6.5e-91 338.6 400 54.0
CDE01G0517 Ceratophyllum demersum HOM05D005050 ORTHO05D006198 2.5e-90 336.7 412 56.8
Lj9A312G31 Lonicera japonica HOM05D005050 ORTHO05D006198 2.5e-90 336.7 409 54.0
Dinv24255 Davidia involucrata HOM05D005050 ORTHO05D006198 3.2e-90 336.3 308 65.3
SHI16611 Sapria himalayana HOM05D005050 ORTHO05D006198 2.7e-89 333.2 409 52.8
AUR62029865 Chenopodium quinoa HOM05D005050 ORTHO05D006198 3.9e-88 329.3 333 58.3
Nitab4.5_0009907g0040 Nicotiana tabacum HOM05D005050 ORTHO05D006198 5.1e-88 328.9 411 53.0
Aa31LG1G10 Aethionema arabicum HOM05D005050 ORTHO05D006198 9.6e-87 324.7 382 54.2
Peaxi162Scf00011g00032 Petunia axillaris HOM05D005050 ORTHO05D006198 1.3e-86 324.3 412 51.9
Zm00001eb216800 Zea mays HOM05D005050 ORTHO05D006198 1.1e-85 321.2 392 52.3
unitig_699.g19082 Utricularia gibba HOM05D005050 ORTHO05D006198 2.9e-83 313.2 411 49.9
BcaNung05518 Brassica carinata HOM05D005050 ORTHO05D006198 3.8e-83 312.8 402 53.0
Oeu000199.1 Olea europaea HOM05D005050 ORTHO05D006198 6.5e-83 312.0 417 52.8
vmacro01791 Vaccinium macrocarpon HOM05D005050 ORTHO05D006198 6.5e-83 312.0 307 61.2
Lalb_Chr07g0189191 Lupinus albus HOM05D005050 ORTHO05D006198 8.7e-80 301.6 290 63.4
Sc10g0004970 Simmondsia chinensis HOM05D005050 ORTHO05D006198 5.5e-74 282.3 325 54.2
BcaB03g14555 Brassica carinata HOM05D005050 ORTHO05D006198 3.9e-72 276.2 278 60.4
Oeu026061.1 Olea europaea HOM05D005050 ORTHO05D006198 1.1e-69 268.1 247 62.3
unitig_27.g24937 Utricularia gibba HOM05D005050 ORTHO05D006198 1.9e-66 257.3 261 61.7
AagrBONN_evm.TU.Sc2ySwM_344.3376 Anthoceros agrestis HOM05D005050 ORTHO05D006198 1.6e-65 254.2 411 46.5
C08p45110 Brassica napus HOM05D005050 ORTHO05D006198 3.6e-65 253.1 329 50.8
CARHR015720 Cardamine hirsuta HOM05D005050 ORTHO05D006198 6.1e-65 252.3 272 58.8
BraA06t24298Z Brassica rapa HOM05D005050 ORTHO05D006198 5.1e-64 249.2 269 58.7
Mapoly0066s0029 Marchantia polymorpha HOM05D005050 ORTHO05D006198 5.1e-64 249.2 414 44.2
Psat1g219800 Pisum sativum HOM05D005050 ORTHO05D006198 6.7e-64 248.8 270 60.0
BolC5t30067H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-63 246.9 269 58.7
Potri.001G208200 Populus trichocarpa HOM05D005050 ORTHO05D006198 1.1e-61 241.5 274 57.3
BolC8t52057H Brassica oleracea HOM05D005050 ORTHO05D006198 2.6e-60 236.9 268 57.8
AUR62018227 Chenopodium quinoa HOM05D005050 ORTHO05D006198 1.5e-58 231.1 341 48.1
arahy.Tifrunner.gnm1.ann1.5TH0SF Arachis hypogaea HOM05D005050 ORTHO05D006198 6.7e-56 222.2 264 56.8
Os03g0701900 Oryza sativa ssp. japonica HOM05D005050 ORTHO05D006198 3.3e-55 219.9 255 55.7
BraA09t41526Z Brassica rapa HOM05D005050 ORTHO05D006198 9.7e-55 218.4 268 53.0
Pp3c14_12690 Physcomitrium patens HOM05D005050 ORTHO05D006198 2.9e-51 206.8 463 36.9
CANSAT25G2757 Cannabis sativa HOM05D005050 ORTHO05D006198 1.1e-50 204.9 174 65.5
Pp3c17_13310 Physcomitrium patens HOM05D005050 ORTHO05D006198 1.5e-47 194.5 449 36.3
Zm00001eb054200 Zea mays HOM05D005050 ORTHO05D006198 7.5e-47 192.2 259 51.4
CANSAT35G1170 Cannabis sativa HOM05D005050 ORTHO05D006198 1.8e-45 187.6 134 70.9
BcaB03g14557 Brassica carinata HOM05D005050 ORTHO05D006198 7.0e-45 185.7 182 60.4
CANSAT56G3350 Cannabis sativa HOM05D005050 ORTHO05D006198 1.6e-44 184.5 133 70.7
SMO116G0236 Selaginella moellendorffii HOM05D005050 ORTHO05D006198 1.9e-42 177.6 383 40.2
Oeu026060.1 Olea europaea HOM05D005050 ORTHO05D006198 9.1e-37 158.7 185 56.8
CBR_g5711 Chara braunii HOM05D005050 ORTHO05D006198 3.3e-34 150.2 470 32.3
Haze_01617 Corylus avellana HOM05D005050 ORTHO05D006198 2.0e-31 141.0 200 50.5
BcaB03g14552 Brassica carinata HOM05D005050 ORTHO05D006198 2.6e-31 140.6 140 59.3
CARHR015710 Cardamine hirsuta HOM05D005050 ORTHO05D006198 1.3e-30 138.3 137 59.9
Haze_01615 Corylus avellana HOM05D005050 ORTHO05D006198 2.5e-26 124.0 109 63.3
unitig_27.g24936 Utricularia gibba HOM05D000188 ORTHO05D005820 2.3e-24 117.5 113 55.8
BcaNung06586 Brassica carinata HOM05D005050 ORTHO05D006198 4.9e-22 109.8 125 55.2
Actinidia00225 Actinidia chinensis HOM05D000304 ORTHO05D000185 1.7e-11 74.7 136 39.0
Sabra03G0013800 Salix brachista HOM05D005050 ORTHO05D006198 8.6e-11 72.4 196 40.8
Zm00001eb142240 Zea mays HOM05D000061 ORTHO05D000050 6.8e-08 62.8 37 78.4
Zm00001eb244490 Zea mays HOM05D001326 ORTHO05D002471 2.2e-06 57.8 33 78.8
Cre09.g387300 Chlamydomonas reinhardtii HOM05D005050 ORTHO05D006198 2.9e-06 57.4 108 38.0


User provided reference genes

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