Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G5074 Papaver somniferum HOM05D005379 ORTHO05D006661 6.3e-185 650.6 319 100.0
PSO063G0621 Papaver somniferum HOM05D005379 ORTHO05D006661 2.5e-157 558.9 319 89.3
TAR375G0328 Trochodendron aralioides HOM05D005379 ORTHO05D006661 1.3e-108 397.1 314 65.6
MBI04_g36330_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 3.2e-104 382.5 311 65.0
MBI04_g38758_MAGBIO Magnolia biondii HOM05D005379 ORTHO05D006661 1.6e-103 380.2 311 65.0
GSVIVG01013977001 Vitis vinifera HOM05D005379 ORTHO05D006661 2.3e-102 376.3 312 63.8
CSS0027857 Camellia sinensis var. sinensis HOM05D005379 ORTHO05D006661 3.9e-102 375.6 315 61.0
Cfa013572 Carpinus fangiana HOM05D005379 ORTHO05D006661 6.7e-102 374.8 316 62.3
TAR374G0427 Trochodendron aralioides HOM05D005379 ORTHO05D006661 7.4e-101 371.3 295 66.1
QL09p028045 Quercus lobata HOM05D005379 ORTHO05D006661 1.6e-100 370.2 314 62.1
Thecc.03G149400 Theobroma cacao HOM05D005379 ORTHO05D006661 3.7e-100 369.0 310 65.2
Prupe.2G273100 Prunus persica HOM05D005379 ORTHO05D006661 4.0e-99 365.5 314 60.5
Rhsim03G0161700 Rhododendron simsii HOM05D005379 ORTHO05D006661 1.2e-98 364.0 313 61.7
TWI23G1062 Tripterygium wilfordii HOM05D005379 ORTHO05D006661 4.5e-98 362.1 317 62.5
CANSAT56G0595 Cannabis sativa HOM05D005379 ORTHO05D006661 1.7e-97 360.1 318 59.1
Manes.14G038300 Manihot esculenta HOM05D005379 ORTHO05D006661 1.7e-97 360.1 313 60.4
CANSAT56G1299 Cannabis sativa HOM05D005379 ORTHO05D006661 2.2e-97 359.8 318 59.1
Sopen06g010750 Solanum pennellii HOM05D005379 ORTHO05D006661 2.9e-97 359.4 313 62.6
Solyc06g034100.4 Solanum lycopersicum HOM05D005379 ORTHO05D006661 3.8e-97 359.0 313 62.6
Ciclev10005581m.g Citrus clementina HOM05D005379 ORTHO05D006661 4.9e-97 358.6 311 61.7
CDE11G0172 Ceratophyllum demersum HOM05D005379 ORTHO05D006661 6.5e-97 358.2 312 59.6
Gohir.A07G043200 Gossypium hirsutum HOM05D005379 ORTHO05D006661 6.5e-97 358.2 310 62.3
Actinidia31774 Actinidia chinensis HOM05D005379 ORTHO05D006661 8.4e-97 357.8 310 61.3
AUR62002241 Chenopodium quinoa HOM05D005379 ORTHO05D006661 1.9e-96 356.7 317 59.3
CsaV3_6G041840 Cucumis sativus L. HOM05D005379 ORTHO05D006661 2.5e-96 356.3 312 59.9
MD07G1249400 Malus domestica HOM05D005379 ORTHO05D006661 2.5e-96 356.3 322 58.4
Gorai.001G050800 Gossypium raimondii HOM05D005379 ORTHO05D006661 3.2e-96 355.9 310 61.9
AUR62015453 Chenopodium quinoa HOM05D005379 ORTHO05D006661 5.5e-96 355.1 317 59.3
Lalb_Chr05g0217631 Lupinus albus HOM05D005379 ORTHO05D006661 7.1e-96 354.8 308 60.1
EL10Ac3g05878 Beta vulgaris HOM05D005379 ORTHO05D006661 9.3e-96 354.4 313 59.4
MELO3C008037.2 Cucumis melo HOM05D005379 ORTHO05D006661 1.6e-95 353.6 312 59.3
Sc18g0007310 Simmondsia chinensis HOM05D005379 ORTHO05D006661 3.5e-95 352.4 314 58.9
Sed0000219 Sechium edule HOM05D005379 ORTHO05D006661 1.0e-94 350.9 316 58.9
PGR004G0100 Punica granatum HOM05D005379 ORTHO05D006661 1.3e-94 350.5 314 59.6
Dinv06588 Davidia involucrata HOM05D005379 ORTHO05D006661 1.8e-94 350.1 292 64.0
Hund11852 Selenicereus undatus HOM05D005379 ORTHO05D006661 1.8e-94 350.1 314 59.6
FvH4_7g27000 Fragaria vesca HOM05D005379 ORTHO05D006661 3.0e-94 349.4 308 59.1
MD01G1177600 Malus domestica HOM05D005379 ORTHO05D006661 3.0e-94 349.4 321 58.3
MSTRG.8845 Avicennia marina HOM05D005379 ORTHO05D006661 3.9e-94 349.0 310 59.7
Glyma.15G056200 Glycine max HOM05D005379 ORTHO05D006661 3.9e-94 349.0 308 59.4
Glyma.08G176800 Glycine max HOM05D005379 ORTHO05D006661 6.7e-94 348.2 309 58.9
Eucgr.K00130 Eucalyptus grandis HOM05D005379 ORTHO05D006661 1.5e-93 347.1 313 58.1
Potri.003G151600 Populus trichocarpa HOM05D005379 ORTHO05D006661 4.3e-93 345.5 317 60.6
Lj1A584T32 Lonicera japonica HOM05D005379 ORTHO05D006661 5.7e-93 345.1 250 71.2
THA.LOC104811535 Tarenaya hassleriana HOM05D005379 ORTHO05D006661 7.4e-93 344.7 315 59.0
VMungo0540G0153 Vigna mungo HOM05D005379 ORTHO05D006661 2.1e-92 343.2 308 58.1
ClCG01G015600 Citrullus lanatus HOM05D005379 ORTHO05D006661 4.8e-92 342.0 312 58.0
Cc02_g04670 Coffea canephora HOM05D005379 ORTHO05D006661 6.2e-92 341.7 284 64.4
AT5G51220 Arabidopsis thaliana HOM05D005379 ORTHO05D006661 1.8e-91 340.1 309 57.6
Hund04565 Selenicereus undatus HOM05D005379 ORTHO05D006661 3.1e-91 339.3 315 57.1
Migut.F00521 Erythranthe guttata HOM05D005379 ORTHO05D006661 4.1e-91 339.0 310 57.7
Thhalv10014342m.g Eutrema salsugineum HOM05D005379 ORTHO05D006661 4.1e-91 339.0 309 59.2
Lsat_1_v5_gn_8_9541 Lactuca sativa HOM05D005379 ORTHO05D006661 4.1e-91 339.0 314 57.3
SalBow5G2200 Salvia bowleyana HOM05D005379 ORTHO05D006661 9.0e-91 337.8 329 55.6
CARHR256800 Cardamine hirsuta HOM05D005379 ORTHO05D006661 1.2e-90 337.4 309 57.6
CiPaw.08G041400 Carya illinoinensis HOM05D005379 ORTHO05D006661 1.2e-90 337.4 250 66.8
ECA233G0107 Erigeron canadensis HOM05D003586 ORTHO05D004036 1.2e-90 337.4 316 56.0
RcHm_v2.0_Chr1g0373791 Rosa chinensis HOM05D005379 ORTHO05D006661 1.2e-90 337.4 246 66.7
Sp6g13420 Schrenkiella parvula HOM05D005379 ORTHO05D006661 2.0e-90 336.7 309 57.0
Ah.13g071160 Amaranthus hybridus HOM05D005379 ORTHO05D006661 2.6e-90 336.3 315 55.6
Psat1g214640 Pisum sativum HOM05D005379 ORTHO05D006661 7.6e-90 334.7 308 55.8
vmacro06833 Vaccinium macrocarpon HOM05D005379 ORTHO05D006661 7.6e-90 334.7 250 66.8
BcaB08g35480 Brassica carinata HOM05D005379 ORTHO05D006661 1.0e-89 334.3 309 56.3
SalBow7G1847 Salvia bowleyana HOM05D005379 ORTHO05D006661 1.7e-89 333.6 333 54.7
Phvul.006G202400 Phaseolus vulgaris HOM05D005379 ORTHO05D006661 2.2e-89 333.2 308 57.1
Carub.0008s1126 Capsella rubella HOM05D005379 ORTHO05D006661 2.9e-89 332.8 309 58.6
Nitab4.5_0000262g0030 Nicotiana tabacum HOM05D005379 ORTHO05D006661 3.8e-89 332.4 241 68.9
Ca_00152_v3 Cicer arietinum L. HOM05D005379 ORTHO05D006661 8.4e-89 331.3 308 55.8
Oeu042535.3 Olea europaea HOM05D005379 ORTHO05D006661 8.4e-89 331.3 247 64.8
arahy.Tifrunner.gnm1.ann1.3L844V Arachis hypogaea HOM05D005379 ORTHO05D006661 1.4e-88 330.5 308 57.5
BcaC04g20721 Brassica carinata HOM05D005379 ORTHO05D006661 1.9e-88 330.1 309 56.3
Nitab4.5_0002211g0080 Nicotiana tabacum HOM05D005379 ORTHO05D006661 1.9e-88 330.1 311 55.6
Nitab4.5_0010756g0010 Nicotiana tabacum HOM05D005379 ORTHO05D006661 4.2e-88 328.9 246 65.9
Nitab4.5_0000448g0020 Nicotiana tabacum HOM05D005379 ORTHO05D006661 5.5e-88 328.6 241 69.3
Aa31LG3G7760 Aethionema arabicum HOM05D005379 ORTHO05D006661 7.2e-88 328.2 316 57.3
Lj3g0027387 Lotus japonicus HOM05D005379 ORTHO05D006661 9.3e-88 327.8 310 56.5
Medtr2g009320 Medicago truncatula HOM05D005379 ORTHO05D006661 2.1e-87 326.6 308 56.2
FAN06G0815 Fragaria x ananassa HOM05D005379 ORTHO05D006661 6.1e-87 325.1 302 57.3
ATR0057G081 Amborella trichopoda HOM05D005379 ORTHO05D006661 1.3e-86 323.9 303 57.1
Haze_22191 Corylus avellana HOM05D005379 ORTHO05D006661 3.0e-86 322.8 345 53.9
CAN.G174.21 Capsicum annuum HOM05D005379 ORTHO05D006661 3.9e-86 322.4 262 63.0
arahy.Tifrunner.gnm1.ann1.8RST7H Arachis hypogaea HOM05D005379 ORTHO05D006661 1.5e-85 320.5 308 56.2
FAN10G0849 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.9e-85 320.1 246 65.0
AL8G25500 Arabidopsis lyrata HOM05D005379 ORTHO05D006661 1.3e-84 317.4 247 64.8
FAN03G3283 Fragaria x ananassa HOM05D005379 ORTHO05D006661 8.2e-84 314.7 246 64.2
Os07g0490300 Oryza sativa ssp. japonica HOM05D005379 ORTHO05D006661 1.1e-83 314.3 262 62.2
HanXRQChr08g0222701 Helianthus annuus HOM05D005379 ORTHO05D006661 1.8e-83 313.5 253 61.3
HanXRQChr05g0139501 Helianthus annuus HOM05D005379 ORTHO05D006661 9.0e-83 311.2 253 61.7
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 9.0e-83 311.2 266 61.3
SGA_v2.0_scaffold60G20811 Striga asiatica HOM05D005379 ORTHO05D006661 1.2e-82 310.8 339 52.5
DCAR_018078 Daucus carota HOM05D005379 ORTHO05D006661 2.6e-82 309.7 312 52.6
SalBow7G3941 Salvia bowleyana HOM05D005379 ORTHO05D006661 3.4e-82 309.3 320 53.4
Hma1.2p1_0456F.1_g156820 Hydrangea macrophylla HOM05D005379 ORTHO05D006661 1.3e-81 307.4 264 61.4
COL.COLO4_37344 Corchorus olitorius HOM05D003586 ORTHO05D004036 2.9e-81 306.2 227 69.6
Sabra03G0109800 Salix brachista HOM05D005379 ORTHO05D006661 2.9e-81 306.2 254 65.4
Zm00001eb321690 Zea mays HOM05D005379 ORTHO05D006661 5.0e-81 305.4 248 62.1
Peaxi162Scf00304g01113 Petunia axillaris HOM05D005379 ORTHO05D006661 8.5e-81 304.7 226 65.0
ECA238G1883 Erigeron canadensis HOM05D005379 ORTHO05D006661 1.1e-80 304.3 316 52.8
HanXRQChr07g0205531 Helianthus annuus HOM05D005379 ORTHO05D006661 1.6e-79 300.4 255 60.0
A10p07900 Brassica napus HOM05D005379 ORTHO05D006661 1.4e-78 297.4 237 62.9
BraSC35t46008Z Brassica rapa HOM05D005379 ORTHO05D006661 1.4e-78 297.4 237 62.9
C09p39890 Brassica napus HOM05D005379 ORTHO05D006661 3.0e-78 296.2 237 62.0
BolC9t56888H Brassica oleracea HOM05D005379 ORTHO05D006661 3.0e-78 296.2 237 62.0
Cpa.g.sc13.263 Carica papaya HOM05D005379 ORTHO05D006661 6.9e-75 285.0 221 67.0
Actinidia31671 Actinidia chinensis HOM05D005379 ORTHO05D006661 2.0e-74 283.5 311 52.7
Gohir.D07G047600 Gossypium hirsutum HOM05D005379 ORTHO05D006661 1.3e-73 280.8 214 66.8
Peaxi162Scf00167g00730 Petunia axillaris HOM05D005379 ORTHO05D006661 3.8e-73 279.3 168 78.6
Oeu022464.1 Olea europaea HOM05D005379 ORTHO05D006661 3.1e-67 259.6 195 67.2
Zm00001eb105230 Zea mays HOM05D005379 ORTHO05D006661 1.6e-66 257.3 170 72.9
Manes.06G131601 Manihot esculenta HOM05D005379 ORTHO05D006661 2.4e-59 233.4 288 49.3
TPR.G9516 Trifolium pratense HOM05D005379 ORTHO05D006661 5.3e-59 232.3 308 44.8
BcaB05g24017 Brassica carinata HOM05D005379 ORTHO05D006661 6.3e-52 208.8 257 51.0
FAN06G1013 Fragaria x ananassa HOM05D005379 ORTHO05D006661 1.4e-51 207.6 173 60.7
Mapoly0029s0089 Marchantia polymorpha HOM05D005379 ORTHO05D006661 1.4e-51 207.6 240 45.8
AagrBONN_evm.TU.Sc2ySwM_228.472 Anthoceros agrestis HOM05D005379 ORTHO05D006661 1.8e-51 207.2 239 45.6
Pp3c8_7310 Physcomitrium patens HOM05D005379 ORTHO05D006661 1.0e-49 201.4 273 40.7
CBR_g48514 Chara braunii HOM05D005379 ORTHO05D006661 1.2e-47 194.5 242 42.6
CANSAT56G1106 Cannabis sativa HOM05D005379 ORTHO05D006661 3.6e-47 193.0 165 60.6
Lalb_Chr16g0382791 Lupinus albus HOM05D005379 ORTHO05D006661 8.3e-44 181.8 151 64.9
unitig_0.g2509 Utricularia gibba HOM05D005379 ORTHO05D006661 8.3e-44 181.8 105 81.9
SMO361G0220 Selaginella moellendorffii HOM05D005379 ORTHO05D006661 7.7e-42 175.3 226 40.7
CANSAT56G1775 Cannabis sativa HOM05D005379 ORTHO05D006661 5.6e-40 169.1 123 66.7
Dinv06594 Davidia involucrata HOM05D005379 ORTHO05D006661 1.1e-32 144.8 132 60.6
A02p12440 Brassica napus HOM05D005379 ORTHO05D006661 3.0e-25 120.2 80 71.2
BraA02t06308Z Brassica rapa HOM05D005379 ORTHO05D006661 2.5e-24 117.1 80 68.8
BcaC03g14620 Brassica carinata HOM05D005379 ORTHO05D006661 6.8e-22 109.0 80 61.2
MCO01G548 Micromonas commoda HOM05D005379 ORTHO05D006661 2.9e-20 103.6 157 36.3
HPP92_009967 Vanilla planifolia HOM05D005379 ORTHO05D006661 4.1e-19 99.8 110 50.0
Ah.13g066320 Amaranthus hybridus HOM05D005379 ORTHO05D006661 7.1e-19 99.0 161 41.0
BolC2t08192H Brassica oleracea HOM05D005379 ORTHO05D006661 1.2e-18 98.2 70 64.3
Ah.13g066300 Amaranthus hybridus HOM05D005379 ORTHO05D006661 1.1e-16 91.7 118 44.1
Cre01.g052050 Chlamydomonas reinhardtii HOM05D005379 ORTHO05D006661 3.3e-16 90.1 223 29.1
Lalb_Chr16g0382801 Lupinus albus HOM05D005379 ORTHO05D006661 2.6e-13 80.5 120 38.3
SEGI_00850 Sequoiadendron giganteum HOM05D005379 ORTHO05D006661 3.9e-09 66.6 47 63.8
HPP92_009968 Vanilla planifolia HOM05D005379 ORTHO05D006661 3.3e-08 63.5 37 73.0
C02p20560 Brassica napus HOM05D005379 ORTHO05D006661 4.0e-06 56.6 39 64.1
RcHm_v2.0_Chr1g0373801 Rosa chinensis HOM05D005379 ORTHO05D006661 4.0e-06 56.6 36 72.2


User provided reference genes

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