Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4531 Papaver somniferum HOM05D005514 ORTHO05D006563 1.8e-200 702.6 404 100.0
PSO566G0157 Papaver somniferum HOM05D005514 ORTHO05D006563 3.6e-177 625.2 407 87.7
TAR383G0343 Trochodendron aralioides HOM05D001777 ORTHO05D001809 2.0e-79 300.4 410 49.3
Duzib168G0165 Durio zibethinus HOM05D005514 ORTHO05D006563 5.5e-77 292.4 371 50.1
Gohir.D08G262600 Gossypium hirsutum HOM05D005514 ORTHO05D006563 6.7e-75 285.4 378 51.3
Hma1.2p1_1151F.1_g261950 Hydrangea macrophylla HOM05D005514 ORTHO05D006563 7.4e-74 282.0 373 50.7
CiPaw.04G162600 Carya illinoinensis HOM05D005514 ORTHO05D006563 9.7e-74 281.6 373 49.3
Thecc.09G107100 Theobroma cacao HOM05D005514 ORTHO05D006563 9.7e-74 281.6 374 49.7
MD02G1042900 Malus domestica HOM05D005514 ORTHO05D006563 1.3e-73 281.2 377 50.1
Actinidia32673 Actinidia chinensis HOM05D005514 ORTHO05D006563 1.4e-72 277.7 360 49.7
Nn2g11677 Nelumbo nucifera HOM05D005514 ORTHO05D006563 1.4e-72 277.7 362 50.6
QL02p045925 Quercus lobata HOM05D005514 ORTHO05D006563 1.8e-72 277.3 416 46.2
Ca_25539_v3 Cicer arietinum L. HOM05D005514 ORTHO05D006563 3.1e-72 276.6 383 50.4
AUR62010955 Chenopodium quinoa HOM05D005514 ORTHO05D006563 2.6e-71 273.5 378 50.5
Aqoxy7G01583 Aquilegia oxysepala HOM05D005514 ORTHO05D006563 1.1e-69 268.1 437 43.2
CANSAT02G0006 Cannabis sativa HOM05D005514 ORTHO05D006563 1.1e-69 268.1 373 49.3
Dinv41624 Davidia involucrata HOM05D005514 ORTHO05D006563 1.5e-69 267.7 347 50.7
Gorai.004G280600 Gossypium raimondii HOM05D005514 ORTHO05D006563 1.5e-69 267.7 383 49.6
TAR624G0612 Trochodendron aralioides HOM05D005514 ORTHO05D006563 5.5e-69 265.8 315 50.2
CiPaw.03G229100 Carya illinoinensis HOM05D005514 ORTHO05D006563 1.2e-68 264.6 376 48.9
Eucgr.C01267 Eucalyptus grandis HOM05D005514 ORTHO05D006563 3.6e-68 263.1 379 49.9
Prupe.7G234000 Prunus persica HOM05D005514 ORTHO05D006563 1.0e-67 261.5 340 51.2
RcHm_v2.0_Chr2g0089981 Rosa chinensis HOM05D005514 ORTHO05D006563 1.4e-67 261.2 374 47.9
Atru.chr7.1371 Acer truncatum HOM05D005514 ORTHO05D006563 1.8e-67 260.8 392 48.5
Medtr6g087890 Medicago truncatula HOM05D005514 ORTHO05D006563 2.3e-67 260.4 377 48.0
EL10Ac8g18440 Beta vulgaris HOM05D005514 ORTHO05D006563 3.0e-67 260.0 379 49.3
Gohir.A08G241800 Gossypium hirsutum HOM05D005514 ORTHO05D006563 3.0e-67 260.0 381 47.8
Sabra06G0124000 Salix brachista HOM05D005514 ORTHO05D006563 3.0e-67 260.0 368 46.7
vmacro06229 Vaccinium macrocarpon HOM05D005514 ORTHO05D006563 1.5e-66 257.7 358 47.8
CSS0000167 Camellia sinensis var. sinensis HOM05D005514 ORTHO05D006563 2.0e-66 257.3 352 48.0
Cfa003235 Carpinus fangiana HOM05D005514 ORTHO05D006563 7.5e-66 255.4 351 50.1
Dinv36656 Davidia involucrata HOM05D005514 ORTHO05D006563 1.7e-65 254.2 351 48.1
Phvul.004G165700 Phaseolus vulgaris HOM05D005514 ORTHO05D006563 1.7e-65 254.2 376 49.5
Glyma.09G192400 Glycine max HOM05D005514 ORTHO05D006563 2.8e-65 253.4 375 47.7
Psat1g044240 Pisum sativum HOM05D005514 ORTHO05D006563 2.8e-65 253.4 389 47.8
Ciclev10008655m.g Citrus clementina HOM05D005514 ORTHO05D006563 4.8e-65 252.7 391 48.1
Peaxi162Scf00031g00232 Petunia axillaris HOM05D005514 ORTHO05D006563 8.2e-65 251.9 358 47.2
Nitab4.5_0000010g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 7.7e-63 245.4 367 46.0
CAN.G148.5 Capsicum annuum HOM05D005514 ORTHO05D006563 1.0e-62 245.0 360 46.9
FvH4_1g04330 Fragaria vesca HOM05D005514 ORTHO05D006563 2.2e-62 243.8 374 46.5
Glyma.07G084500 Glycine max HOM05D005514 ORTHO05D006563 5.0e-62 242.7 378 47.1
Manes.03G023100 Manihot esculenta HOM05D005514 ORTHO05D006563 4.2e-61 239.6 343 47.5
Oeu002248.1 Olea europaea HOM05D005514 ORTHO05D006563 4.2e-61 239.6 395 44.6
Actinidia07405 Actinidia chinensis HOM05D005514 ORTHO05D006563 5.5e-61 239.2 368 45.7
Nitab4.5_0000952g0010 Nicotiana tabacum HOM05D005514 ORTHO05D006563 7.2e-61 238.8 386 44.0
MBI14_g08031_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 9.4e-61 238.4 375 45.9
MBI04_g19180_MAGBIO Magnolia biondii HOM05D005514 ORTHO05D006563 6.1e-60 235.7 400 43.8
Lj2g0026530 Lotus japonicus HOM05D005514 ORTHO05D006563 1.4e-59 234.6 424 42.9
Duzib150G0489 Durio zibethinus HOM05D005514 ORTHO05D006563 1.8e-59 234.2 375 45.1
FAN26G2817 Fragaria x ananassa HOM05D005514 ORTHO05D006563 1.8e-59 234.2 397 43.6
VMungo0464G0467 Vigna mungo HOM05D005514 ORTHO05D006563 5.2e-59 232.6 344 48.5
Hund09218 Selenicereus undatus HOM05D005514 ORTHO05D006563 8.8e-59 231.9 341 47.5
FAN19G0406 Fragaria x ananassa HOM05D005514 ORTHO05D006563 4.4e-58 229.6 397 43.6
HanXRQChr10g0318661 Helianthus annuus HOM05D005514 ORTHO05D006563 4.4e-58 229.6 384 48.7
Lalb_Chr24g0397401 Lupinus albus HOM05D005514 ORTHO05D006563 5.7e-58 229.2 344 47.4
MD15G1181700 Malus domestica HOM05D005514 ORTHO05D006563 7.5e-58 228.8 344 44.8
AUR62021464 Chenopodium quinoa HOM05D005514 ORTHO05D006563 6.3e-57 225.7 381 45.4
FAN23G0542 Fragaria x ananassa HOM05D005514 ORTHO05D006563 2.4e-56 223.8 344 45.6
Lalb_Chr22g0352701 Lupinus albus HOM05D005514 ORTHO05D006563 2.7e-55 220.3 370 45.9
Cc06_g09930 Coffea canephora HOM05D005514 ORTHO05D006563 5.9e-55 219.2 336 45.8
Ah.07g205470 Amaranthus hybridus HOM05D005514 ORTHO05D006563 3.8e-54 216.5 396 41.4
MSTRG.10624 Avicennia marina HOM05D005514 ORTHO05D006563 8.6e-54 215.3 353 43.9
Sc18g0001310 Simmondsia chinensis HOM05D005514 ORTHO05D006563 8.6e-54 215.3 372 44.9
Potri.018G083100 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.9e-53 214.2 386 42.2
Solyc05g018340.4 Solanum lycopersicum HOM05D005514 ORTHO05D006563 5.5e-53 212.6 359 44.3
Sopen05g015140 Solanum pennellii HOM05D005514 ORTHO05D006563 5.5e-53 212.6 359 44.3
CsaV3_1G045730 Cucumis sativus L. HOM05D005514 ORTHO05D006563 8.0e-52 208.8 387 42.9
MELO3C024688.2 Cucumis melo HOM05D005514 ORTHO05D006563 1.0e-51 208.4 387 42.6
TWI23G1143 Tripterygium wilfordii HOM05D005514 ORTHO05D006563 1.2e-50 204.9 355 44.2
Cpa.g.sc23.79 Carica papaya HOM05D005514 ORTHO05D006563 1.5e-50 204.5 234 55.6
arahy.Tifrunner.gnm1.ann1.7WD3SA Arachis hypogaea HOM05D005514 ORTHO05D006563 2.0e-50 204.1 352 44.0
TPR.G10049 Trifolium pratense HOM05D005514 ORTHO05D006563 2.0e-50 204.1 382 44.5
ClCG06G008760 Citrullus lanatus HOM05D005514 ORTHO05D006563 5.7e-50 202.6 361 43.2
Lalb_Chr14g0371621 Lupinus albus HOM05D005514 ORTHO05D006563 1.3e-49 201.4 345 45.5
PGSC0003DMG400027426 Solanum tuberosum HOM05D005514 ORTHO05D006563 1.7e-49 201.1 331 44.1
Haze_25771 Corylus avellana HOM05D005514 ORTHO05D006563 2.2e-49 200.7 238 54.6
arahy.Tifrunner.gnm1.ann1.LW2ZPS Arachis hypogaea HOM05D005514 ORTHO05D006563 2.8e-49 200.3 345 44.3
Sed0015833 Sechium edule HOM05D005514 ORTHO05D006563 2.0e-47 194.1 383 40.7
ECA234G0189 Erigeron canadensis HOM05D005514 ORTHO05D006563 3.8e-46 189.9 371 46.4
Potri.006G160500 Populus trichocarpa HOM05D005514 ORTHO05D006563 1.1e-45 188.3 368 40.8
SEGI_01979 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 3.6e-44 183.3 324 42.6
Oeu064593.1 Olea europaea HOM05D005514 ORTHO05D006563 4.7e-44 183.0 368 39.7
ATR0315G038 Amborella trichopoda HOM05D005514 ORTHO05D006563 8.0e-44 182.2 346 41.3
Sed0026603 Sechium edule HOM05D005514 ORTHO05D006563 1.2e-42 178.3 448 35.3
COL.COLO4_34823 Corchorus olitorius HOM05D005514 ORTHO05D006563 3.4e-42 176.8 343 38.5
THA.LOC104804022 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 3.2e-40 170.2 368 41.8
Rhsim03G0240000 Rhododendron simsii HOM05D005514 ORTHO05D006563 1.6e-39 167.9 229 51.1
DCAR_028696 Daucus carota HOM05D005514 ORTHO05D006563 2.1e-36 157.5 409 35.9
PGR142G2557 Punica granatum HOM05D005514 ORTHO05D006563 2.1e-36 157.5 361 40.2
MSTRG.26360 Avicennia marina HOM05D005514 ORTHO05D006563 1.5e-34 151.4 335 40.0
Nn3g18098 Nelumbo nucifera HOM05D005514 ORTHO05D006563 2.0e-34 151.0 174 51.7
CARHR236720 Cardamine hirsuta HOM05D005514 ORTHO05D006563 9.8e-34 148.7 383 38.4
Thhalv10025603m.g Eutrema salsugineum HOM05D005514 ORTHO05D006563 2.9e-33 147.1 388 37.1
GSVIVG01015362001 Vitis vinifera HOM05D005514 ORTHO05D006563 3.7e-33 146.7 211 43.6
Zm00001eb147430 Zea mays HOM05D005514 ORTHO05D006563 8.3e-33 145.6 372 34.4
AL7G23470 Arabidopsis lyrata HOM05D005514 ORTHO05D006563 2.7e-31 140.6 381 37.3
Migut.K00501 Erythranthe guttata HOM05D005514 ORTHO05D006563 2.7e-31 140.6 355 39.2
Aa31LG8G17060 Aethionema arabicum HOM05D005514 ORTHO05D006563 7.8e-31 139.0 356 36.2
CDE05G1480 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 5.1e-30 136.3 331 36.6
Sp7g26930 Schrenkiella parvula HOM05D005514 ORTHO05D006563 5.1e-30 136.3 379 36.4
Sabra18G0070900 Salix brachista HOM05D005514 ORTHO05D006563 6.6e-30 136.0 183 45.9
THA.LOC104820053 Tarenaya hassleriana HOM05D005514 ORTHO05D006563 6.6e-30 136.0 374 37.4
Lsat_1_v5_gn_5_102941 Lactuca sativa HOM05D005514 ORTHO05D006563 9.5e-29 132.1 229 44.5
Lj7A655G38 Lonicera japonica HOM05D005514 ORTHO05D006563 3.6e-28 130.2 270 39.3
Os06g0332900 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 4.0e-27 126.7 341 34.3
AT4G28990 Arabidopsis thaliana HOM05D005514 ORTHO05D006563 6.8e-27 125.9 380 35.8
SEGI_18875 Sequoiadendron giganteum HOM05D005514 ORTHO05D006563 2.6e-26 124.0 384 35.2
Carub.0007s1165 Capsella rubella HOM05D005514 ORTHO05D006563 9.2e-24 115.5 381 35.2
BcaNung00443 Brassica carinata HOM05D005514 ORTHO05D006563 1.0e-22 112.1 362 35.1
CDE05G2615 Ceratophyllum demersum HOM05D005514 ORTHO05D006563 2.3e-22 110.9 365 34.0
C01p10530 Brassica napus HOM05D001777 ORTHO05D006510 3.0e-22 110.5 369 34.7
BolC1t01016H Brassica oleracea HOM05D001777 ORTHO05D006510 1.5e-21 108.2 376 34.8
A01p08990 Brassica napus HOM05D001777 ORTHO05D006510 2.5e-21 107.5 332 34.9
HPP92_000517 Vanilla planifolia HOM05D005514 ORTHO05D006563 4.3e-21 106.7 199 41.7
BcaNung01339 Brassica carinata HOM05D005514 ORTHO05D006563 5.6e-21 106.3 386 33.7
Mapoly0001s0121 Marchantia polymorpha HOM05D005514 ORTHO05D006563 1.2e-20 105.1 371 33.7
Os02g0274700 Oryza sativa ssp. japonica HOM05D005514 ORTHO05D006563 1.4e-19 101.7 207 38.6
Pp3c14_23580 Physcomitrium patens HOM05D005514 ORTHO05D006563 3.1e-19 100.5 352 32.7
BcaC09g51675 Brassica carinata HOM05D005514 ORTHO05D006563 7.6e-18 95.9 303 34.7
CBR_g44542 Chara braunii HOM05D005514 ORTHO05D006563 3.0e-14 84.0 222 36.5
BcaNung00440 Brassica carinata HOM05D005514 ORTHO05D006563 1.1e-13 82.0 394 31.5
AagrBONN_evm.TU.Sc2ySwM_344.197 Anthoceros agrestis HOM05D005514 ORTHO05D006563 3.3e-13 80.5 75 53.3
BraA03t14917Z Brassica rapa HOM05D005514 ORTHO05D006563 5.6e-13 79.7 322 33.2
BcaNung02893 Brassica carinata HOM05D005514 ORTHO05D006563 3.6e-12 77.0 371 33.2
C07p56560 Brassica napus HOM05D005514 ORTHO05D006563 3.6e-12 77.0 371 33.2
SGA_v2.0_scaffold92G28280 Striga asiatica HOM05D005514 ORTHO05D006563 4.7e-12 76.6 92 50.0
SMO116G0230 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 1.2e-10 72.0 47 70.2
SMO169G0168 Selaginella moellendorffii HOM05D005514 ORTHO05D006563 4.9e-09 66.6 192 31.8
unitig_0.g2554 Utricularia gibba HOM05D005514 ORTHO05D006563 6.4e-09 66.2 141 36.2
BolC7t46134H Brassica oleracea HOM05D005514 ORTHO05D006563 1.1e-08 65.5 356 31.7
Sabra09G0058400 Salix brachista HOM05D002034 ORTHO05D006399 3.5e-07 60.5 67 47.8
GSVIVG01030073001 Vitis vinifera HOM05D000417 ORTHO05D000342 1.0e-06 58.9 67 46.3
Nn2g13237 Nelumbo nucifera HOM05D002034 ORTHO05D006399 1.3e-06 58.5 26 84.6
Migut.N00767 Erythranthe guttata HOM05D002034 ORTHO05D006399 1.7e-06 58.2 26 84.6
Potri.009G076600 Populus trichocarpa HOM05D002034 ORTHO05D006399 1.7e-06 58.2 26 84.6
SEGI_19079 Sequoiadendron giganteum HOM05D002034 ORTHO05D006399 2.3e-06 57.8 28 71.4
Dinv09661 Davidia involucrata HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 84.6
Duzib170G0382 Durio zibethinus HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Gohir.A03G026200 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Gohir.D03G142300 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Gorai.003G149400 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Manes.02G216300 Manihot esculenta HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Manes.18G141005 Manihot esculenta HOM05D002034 ORTHO05D006399 3.0e-06 57.4 26 80.8
Sed0021639 Sechium edule HOM05D002034 ORTHO05D006399 3.0e-06 57.4 27 74.1
Gohir.D03G142100 Gossypium hirsutum HOM05D002034 ORTHO05D006399 3.9e-06 57.0 55 50.9
Gorai.003G149100 Gossypium raimondii HOM05D002034 ORTHO05D006399 3.9e-06 57.0 55 50.9
Lj1C128G5 Lonicera japonica HOM05D002034 ORTHO05D006399 3.9e-06 57.0 26 84.6
Sc21g0005190 Simmondsia chinensis HOM05D002034 ORTHO05D006399 3.9e-06 57.0 26 84.6
Zm00001eb123460 Zea mays HOM05D002034 ORTHO05D006399 3.9e-06 57.0 26 80.8
Zm00001eb336220 Zea mays HOM05D002034 ORTHO05D006399 3.9e-06 57.0 26 80.8
Nn1g04222 Nelumbo nucifera HOM05D002034 ORTHO05D006399 5.1e-06 56.6 25 84.0
Nitab4.5_0004174g0030 Nicotiana tabacum HOM05D002034 ORTHO05D006399 5.1e-06 56.6 44 56.8
HPP92_003242 Vanilla planifolia HOM05D002034 ORTHO05D006399 5.1e-06 56.6 26 84.6
CiPaw.14G055200 Carya illinoinensis HOM05D002034 ORTHO05D006399 6.6e-06 56.2 26 76.9
ClCG03G000290 Citrullus lanatus HOM05D002034 ORTHO05D006399 6.6e-06 56.2 26 76.9
MELO3C020506.2 Cucumis melo HOM05D002034 ORTHO05D006399 6.6e-06 56.2 26 76.9
CsaV3_1G036630 Cucumis sativus L. HOM05D002034 ORTHO05D006399 6.6e-06 56.2 26 76.9
Nitab4.5_0000967g0020 Nicotiana tabacum HOM05D002034 ORTHO05D006399 6.6e-06 56.2 35 65.7
CSS0028239 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.7e-06 55.8 47 55.3
CSS0042328 Camellia sinensis var. sinensis HOM05D002034 ORTHO05D006399 8.7e-06 55.8 47 55.3
CAN.G741.43 Capsicum annuum HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 80.8
Duzib168G0356 Durio zibethinus HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 76.9
Glyma.02G230600 Glycine max HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 80.8
Glyma.14G197700 Glycine max HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 80.8
Hma1.2p1_0146F.1_g065460 Hydrangea macrophylla HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 80.8
Prupe.6G050700 Prunus persica HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 76.9
unitig_26.g10217 Utricularia gibba HOM05D002034 ORTHO05D006399 8.7e-06 55.8 26 80.8


User provided reference genes

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