Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4423 Papaver somniferum HOM05D005248 ORTHO05D006409 1.4e-105 386.3 195 100.0
PSO063G1686 Papaver somniferum HOM05D005248 ORTHO05D006409 3.8e-100 368.2 195 94.4
CAN.G1008.49 Capsicum annuum HOM05D005248 ORTHO05D006409 1.2e-61 240.4 196 63.3
TAR371G0926 Trochodendron aralioides HOM05D005248 ORTHO05D006409 2.7e-61 239.2 195 61.5
Nitab4.5_0000976g0180 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.0e-60 237.3 196 63.3
Cpa.g.sc13.186 Carica papaya HOM05D005248 ORTHO05D006409 3.9e-60 235.3 199 61.8
Dinv13708 Davidia involucrata HOM05D005248 ORTHO05D006409 5.0e-60 235.0 195 62.6
Sopen03g037010 Solanum pennellii HOM05D005248 ORTHO05D006409 1.9e-59 233.0 196 61.7
CSS0031400 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.3e-59 232.3 195 63.6
Hma1.2p1_0452F.1_g155900 Hydrangea macrophylla HOM05D005248 ORTHO05D006409 4.3e-59 231.9 195 60.0
COL.COLO4_37271 Corchorus olitorius HOM05D005248 ORTHO05D006409 9.5e-59 230.7 197 61.9
PGSC0003DMG400014171 Solanum tuberosum HOM05D005248 ORTHO05D006409 1.6e-58 229.9 196 60.7
Oeu051184.1 Olea europaea HOM05D005248 ORTHO05D006409 4.7e-58 228.4 163 67.5
AT5G51040 Arabidopsis thaliana HOM05D005248 ORTHO05D006409 1.4e-57 226.9 128 80.5
Lj5A86T66 Lonicera japonica HOM05D005248 ORTHO05D006409 2.3e-57 226.1 198 57.1
QL10p000295 Quercus lobata HOM05D005248 ORTHO05D006409 3.1e-57 225.7 194 59.8
Aqoxy4G00470 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 4.0e-57 225.3 196 62.2
MSTRG.22815 Avicennia marina HOM05D005248 ORTHO05D006409 4.0e-57 225.3 196 61.7
Sc14g0003150 Simmondsia chinensis HOM05D005248 ORTHO05D006409 5.2e-57 224.9 129 82.2
Carub.0008s1104 Capsella rubella HOM05D005248 ORTHO05D006409 8.9e-57 224.2 187 63.6
Cc04_g05750 Coffea canephora HOM05D005248 ORTHO05D006409 8.9e-57 224.2 195 59.5
Duzib205G1954 Durio zibethinus HOM05D005248 ORTHO05D006409 8.9e-57 224.2 197 59.9
Aqoxy5G00839 Aquilegia oxysepala HOM05D005248 ORTHO05D006409 1.2e-56 223.8 195 61.5
CSS0027803 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 2.0e-56 223.0 195 62.6
Thecc.03G142000 Theobroma cacao HOM05D005248 ORTHO05D006409 2.0e-56 223.0 197 60.4
AL8G25260 Arabidopsis lyrata HOM05D005248 ORTHO05D006409 2.6e-56 222.6 192 59.4
Nn3g16250 Nelumbo nucifera HOM05D005248 ORTHO05D006409 2.6e-56 222.6 192 57.8
CANSAT78G1265 Cannabis sativa HOM05D005248 ORTHO05D006409 3.4e-56 222.2 201 60.7
Gohir.D07G050600 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.4e-56 222.2 157 69.4
Gorai.001G053700 Gossypium raimondii HOM05D005248 ORTHO05D006409 3.4e-56 222.2 157 69.4
GSVIVG01005682001 Vitis vinifera HOM05D005248 ORTHO05D006409 3.4e-56 222.2 195 60.0
Gohir.A07G046300 Gossypium hirsutum HOM05D005248 ORTHO05D006409 4.4e-56 221.9 157 69.4
Oeu017204.1 Olea europaea HOM05D005248 ORTHO05D006409 4.4e-56 221.9 196 59.7
SalBow1G4990 Salvia bowleyana HOM05D005248 ORTHO05D006409 1.7e-55 219.9 196 59.2
SGA_v2.0_scaffold37G14670 Striga asiatica HOM05D005248 ORTHO05D006409 1.7e-55 219.9 197 61.4
Manes.14G043700 Manihot esculenta HOM05D005248 ORTHO05D006409 2.2e-55 219.5 189 59.8
ECA247G0315 Erigeron canadensis HOM05D005248 ORTHO05D000263 2.9e-55 219.2 174 63.8
CARHR257090 Cardamine hirsuta HOM05D005248 ORTHO05D006409 3.7e-55 218.8 128 76.6
SGA_v2.0_scaffold44G16640 Striga asiatica HOM05D005248 ORTHO05D006409 3.7e-55 218.8 193 60.6
THA.LOC104825042 Tarenaya hassleriana HOM05D005248 ORTHO05D006409 3.7e-55 218.8 137 73.7
Ciclev10032866m.g Citrus clementina HOM05D005248 ORTHO05D006409 4.9e-55 218.4 195 57.9
DCAR_025638 Daucus carota HOM05D005248 ORTHO05D006409 6.4e-55 218.0 202 55.4
Cfa018696 Carpinus fangiana HOM05D005248 ORTHO05D006409 1.1e-54 217.2 173 64.7
Glyma.04G202600 Glycine max HOM05D005248 ORTHO05D006409 1.1e-54 217.2 140 69.3
Potri.015G108300 Populus trichocarpa HOM05D005248 ORTHO05D006409 1.4e-54 216.9 195 57.4
Peaxi162Scf00314g00750 Petunia axillaris HOM05D005248 ORTHO05D006409 1.9e-54 216.5 193 59.1
HanXRQChr02g0034361 Helianthus annuus HOM05D005248 ORTHO05D006409 2.4e-54 216.1 199 57.8
Sp6g13210 Schrenkiella parvula HOM05D005248 ORTHO05D006409 2.4e-54 216.1 128 76.6
arahy.Tifrunner.gnm1.ann1.1UQX8S Arachis hypogaea HOM05D005248 ORTHO05D006409 3.2e-54 215.7 128 73.4
TWI39G0330 Tripterygium wilfordii HOM05D005248 ORTHO05D006409 5.4e-54 214.9 195 56.4
BcaB05g24022 Brassica carinata HOM05D005248 ORTHO05D006409 7.0e-54 214.5 128 76.6
Rhsim08G0198900 Rhododendron simsii HOM05D005248 ORTHO05D006409 7.0e-54 214.5 198 58.6
Ah.11g047000 Amaranthus hybridus HOM05D005248 ORTHO05D006409 9.2e-54 214.2 133 72.2
Lj1g0011989 Lotus japonicus HOM05D005248 ORTHO05D006409 9.2e-54 214.2 195 56.4
AUR62032207 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.2e-53 213.8 133 71.4
Sabra12G0080100 Salix brachista HOM05D005248 ORTHO05D006409 1.2e-53 213.8 195 56.9
Sed0027310 Sechium edule HOM05D005248 ORTHO05D006409 1.2e-53 213.8 195 57.4
Actinidia25510 Actinidia chinensis HOM05D005248 ORTHO05D006409 1.6e-53 213.4 195 60.5
arahy.Tifrunner.gnm1.ann1.4X1L65 Arachis hypogaea HOM05D005248 ORTHO05D006409 2.0e-53 213.0 142 68.3
BcaC03g14629 Brassica carinata HOM05D005248 ORTHO05D006409 2.0e-53 213.0 191 57.6
Lalb_Chr12g0202581 Lupinus albus HOM05D005248 ORTHO05D006409 2.0e-53 213.0 174 61.5
Hund02516 Selenicereus undatus HOM05D005248 ORTHO05D006409 2.0e-53 213.0 175 57.7
EL10Ac5g11271 Beta vulgaris HOM05D005248 ORTHO05D006409 2.7e-53 212.6 187 56.1
MELO3C008773.2 Cucumis melo HOM05D005248 ORTHO05D006409 2.7e-53 212.6 158 64.6
Lsat_1_v5_gn_1_30140 Lactuca sativa HOM05D005248 ORTHO05D006409 2.7e-53 212.6 197 58.9
A02p12520 Brassica napus HOM05D005248 ORTHO05D006409 3.5e-53 212.2 190 57.4
MD14G1145800 Malus domestica HOM05D005248 ORTHO05D006409 3.5e-53 212.2 128 74.2
BraSC35t45996Z Brassica rapa HOM05D005248 ORTHO05D006409 4.6e-53 211.8 194 56.2
AUR62043379 Chenopodium quinoa HOM05D005248 ORTHO05D006409 4.6e-53 211.8 133 70.7
ClCG11G000550 Citrullus lanatus HOM05D005248 ORTHO05D006409 4.6e-53 211.8 142 67.6
PSO675G1946 Papaver somniferum HOM05D005248 ORTHO05D006409 4.6e-53 211.8 142 76.8
Aa31LG3G7530 Aethionema arabicum HOM05D005248 ORTHO05D006409 6.0e-53 211.5 143 70.6
PSO541G2841 Papaver somniferum HOM05D005248 ORTHO05D006409 7.8e-53 211.1 130 79.2
Atru.chr6.1938 Acer truncatum HOM05D005248 ORTHO05D006409 1.0e-52 210.7 232 51.3
A10p08030 Brassica napus HOM05D005248 ORTHO05D006409 1.0e-52 210.7 194 56.2
AUR62043864 Chenopodium quinoa HOM05D005248 ORTHO05D006409 1.0e-52 210.7 133 69.9
VMungo0251G2692 Vigna mungo HOM05D005248 ORTHO05D006409 1.0e-52 210.7 128 73.4
BolC9t56844H Brassica oleracea HOM05D005248 ORTHO05D006409 1.3e-52 210.3 129 76.0
Hund10025 Selenicereus undatus HOM05D005248 ORTHO05D006409 1.3e-52 210.3 127 73.2
Medtr3g098480 Medicago truncatula HOM05D005248 ORTHO05D006409 1.7e-52 209.9 195 57.4
Prupe.5G140100 Prunus persica HOM05D005248 ORTHO05D006409 1.7e-52 209.9 128 75.0
arahy.Tifrunner.gnm1.ann1.JK6BKQ Arachis hypogaea HOM05D005248 ORTHO05D006409 2.3e-52 209.5 194 54.6
RcHm_v2.0_Chr7g0188501 Rosa chinensis HOM05D005248 ORTHO05D006409 3.9e-52 208.8 128 75.0
unitig_61.g26221 Utricularia gibba HOM05D005248 ORTHO05D006409 5.0e-52 208.4 187 58.3
CsaV3_2G009360 Cucumis sativus L. HOM05D005248 ORTHO05D006409 6.6e-52 208.0 128 71.9
Thhalv10014773m.g Eutrema salsugineum HOM05D005248 ORTHO05D006409 8.6e-52 207.6 194 55.2
Migut.I00662 Erythranthe guttata HOM05D005248 ORTHO05D006409 1.1e-51 207.2 196 61.7
Phvul.009G158800 Phaseolus vulgaris HOM05D005248 ORTHO05D006409 1.1e-51 207.2 195 54.4
PGR119G0545 Punica granatum HOM05D005248 ORTHO05D006409 1.1e-51 207.2 199 55.8
arahy.Tifrunner.gnm1.ann1.X29WZH Arachis hypogaea HOM05D005248 ORTHO05D006409 1.9e-51 206.5 194 54.6
BraA02t06314Z Brassica rapa HOM05D005248 ORTHO05D006409 1.9e-51 206.5 197 55.8
Psat7g039840 Pisum sativum HOM05D005248 ORTHO05D006409 1.9e-51 206.5 128 73.4
FAN08G1048 Fragaria x ananassa HOM05D005248 ORTHO05D006409 3.3e-51 205.7 195 56.4
FvH4_5g09730 Fragaria vesca HOM05D005248 ORTHO05D006409 5.6e-51 204.9 195 56.4
FAN04G2277 Fragaria x ananassa HOM05D005248 ORTHO05D006409 5.6e-51 204.9 195 55.9
Glyma.06G162900 Glycine max HOM05D005248 ORTHO05D006409 5.6e-51 204.9 195 55.9
CDE06G0011 Ceratophyllum demersum HOM05D005248 ORTHO05D006409 7.3e-51 204.5 195 59.0
FAN18G0065 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.2e-50 203.8 195 56.4
Zm00001eb198100 Zea mays HOM05D005248 ORTHO05D006409 1.2e-50 203.8 128 70.3
Eucgr.H01475 Eucalyptus grandis HOM05D005248 ORTHO05D006409 2.1e-50 203.0 152 67.8
Atru.chr10.902 Acer truncatum HOM05D005248 ORTHO05D006409 8.1e-50 201.1 162 62.3
BolC2t08204H Brassica oleracea HOM05D005248 ORTHO05D006409 8.1e-50 201.1 200 54.5
Nitab4.5_0012624g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 1.1e-49 200.7 147 65.3
FAN13G2612 Fragaria x ananassa HOM05D005248 ORTHO05D006409 1.4e-49 200.3 195 54.4
MD06G1128800 Malus domestica HOM05D005248 ORTHO05D006409 1.4e-49 200.3 128 71.1
ATR0582G036 Amborella trichopoda HOM05D005248 ORTHO05D006409 1.8e-49 199.9 195 57.4
Medtr8g096070 Medicago truncatula HOM05D005248 ORTHO05D006409 1.8e-49 199.9 174 56.3
C09p39650 Brassica napus HOM05D005248 ORTHO05D006409 2.3e-49 199.5 128 72.7
vmacro19110 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 2.3e-49 199.5 190 53.7
C02p20620 Brassica napus HOM05D005248 ORTHO05D006409 6.8e-49 198.0 114 77.2
Haze_07087 Corylus avellana HOM05D005248 ORTHO05D006409 8.9e-49 197.6 199 54.8
vmacro16762 Vaccinium macrocarpon HOM05D005248 ORTHO05D006409 1.5e-48 196.8 156 64.7
Os11g0528300 Oryza sativa ssp. japonica HOM05D005248 ORTHO05D006409 2.6e-48 196.1 128 71.1
Ca_16820_v3 Cicer arietinum L. HOM05D000402 ORTHO05D000263 1.3e-47 193.7 128 68.0
Lj9C488G13 Lonicera japonica HOM05D005248 ORTHO05D006409 1.7e-47 193.4 115 73.0
HPP92_006440 Vanilla planifolia HOM05D005248 ORTHO05D006409 2.9e-47 192.6 129 72.1
Glyma.08G007100 Glycine max HOM05D005248 ORTHO05D006409 4.9e-47 191.8 169 54.4
vmacro19116 Vaccinium macrocarpon HOM05D000402 ORTHO05D000263 7.1e-46 188.0 191 50.8
Nitab4.5_0010893g0020 Nicotiana tabacum HOM05D005248 ORTHO05D006409 2.3e-44 183.0 169 57.4
CSS0028005 Camellia sinensis var. sinensis HOM05D005248 ORTHO05D006409 3.9e-44 182.2 171 57.3
Sabra15G0130900 Salix brachista HOM05D001551 ORTHO05D000263 4.3e-43 178.7 258 41.5
Lsat_1_v5_gn_9_37901 Lactuca sativa HOM05D005248 ORTHO05D006409 7.3e-43 177.9 116 70.7
CiPaw.12G000300 Carya illinoinensis HOM05D005248 ORTHO05D006409 1.6e-42 176.8 137 62.0
Sabra15G0128600 Salix brachista HOM05D005248 ORTHO05D006409 8.9e-41 171.0 282 38.3
SMO146G0118 Selaginella moellendorffii HOM05D005248 ORTHO05D006409 1.5e-40 170.2 123 61.8
Mapoly0022s0036 Marchantia polymorpha HOM05D005248 ORTHO05D006409 3.5e-37 159.1 124 58.9
Gohir.A07G044532 Gossypium hirsutum HOM05D005248 ORTHO05D006409 2.5e-35 152.9 87 75.9
Pp3c16_25170 Physcomitrium patens HOM05D005248 ORTHO05D006409 9.6e-35 151.0 182 44.5
Rhsim12G0181600 Rhododendron simsii HOM05D005248 ORTHO05D006409 5.8e-32 141.7 102 69.6
Cre12.g550750 Chlamydomonas reinhardtii HOM05D005248 ORTHO05D006409 3.5e-29 132.5 132 50.8
Lj4g0025558 Lotus japonicus HOM05D005248 ORTHO05D006409 6.0e-29 131.7 154 51.3
Zm00001eb113310 Zea mays HOM05D005248 ORTHO05D006409 1.3e-28 130.6 79 70.9
Gohir.A11G038833 Gossypium hirsutum HOM05D005248 ORTHO05D006409 3.0e-28 129.4 86 66.3
BcaC04g20744 Brassica carinata HOM05D005248 ORTHO05D006409 9.6e-27 124.4 72 75.0
Nitab4.5_0002540g0030 Nicotiana tabacum HOM05D005248 ORTHO05D006409 9.6e-27 124.4 141 52.5
TPR.G12753 Trifolium pratense HOM05D005248 ORTHO05D006409 3.4e-24 115.9 72 66.7
QL10p017282 Quercus lobata HOM05D005248 ORTHO05D006409 5.4e-22 108.6 65 67.7
MCO01G238 Micromonas commoda HOM05D005248 ORTHO05D006409 7.9e-21 104.8 103 44.7
PRCOL_00003706 Prasinoderma coloniale HOM05D005248 ORTHO05D006409 1.5e-19 100.5 124 38.7
CAN.G412.4 Capsicum annuum HOM05D005248 ORTHO05D006409 1.6e-18 97.1 59 72.9
TPR.G20580 Trifolium pratense HOM05D005248 ORTHO05D006409 1.1e-17 94.4 56 80.4
AagrBONN_evm.TU.Sc2ySwM_368.2623 Anthoceros agrestis HOM05D005248 ORTHO05D006409 1.7e-07 60.5 52 48.1
TPR.G21935 Trifolium pratense HOM05D005248 ORTHO05D006409 1.7e-07 60.5 35 71.4
Gorai.007G045300 Gossypium raimondii HOM05D005248 ORTHO05D006409 2.2e-07 60.1 103 45.6


User provided reference genes

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