Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 2.8e-79 298.5 145 100.0
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 5.8e-77 290.8 145 97.2
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.1e-54 216.9 140 75.7
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.8e-54 216.1 144 75.0
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.8e-54 216.1 140 75.7
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 1.5e-53 213.0 140 73.6
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 1.5e-53 213.0 140 74.3
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 1.5e-53 213.0 142 71.8
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 3.4e-53 211.8 142 72.5
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 4.4e-53 211.5 140 72.1
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 5.8e-53 211.1 140 73.6
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 5.8e-53 211.1 146 70.5
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 9.9e-53 210.3 142 73.9
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 2.2e-52 209.1 142 71.8
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 2.2e-52 209.1 139 72.7
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 2.9e-52 208.8 142 71.8
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 3.8e-52 208.4 146 69.2
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 6.4e-52 207.6 140 72.1
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 6.4e-52 207.6 142 71.1
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 8.4e-52 207.2 143 71.3
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.9e-51 206.1 140 72.1
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 4.1e-51 204.9 140 74.3
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 7.1e-51 204.1 146 67.8
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 9.2e-51 203.8 140 68.6
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 9.2e-51 203.8 146 67.8
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 9.2e-51 203.8 140 70.7
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 1.2e-50 203.4 146 67.8
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 4.6e-50 201.4 140 70.7
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 1.0e-49 200.3 142 69.0
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-49 200.3 144 68.1
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.3e-49 199.9 142 69.7
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 1.3e-49 199.9 140 70.0
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.7e-49 199.5 140 70.0
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 1.7e-49 199.5 140 70.0
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 1.7e-49 199.5 146 69.2
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 2.3e-49 199.1 142 69.7
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.0e-49 198.7 142 69.7
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 3.0e-49 198.7 142 66.9
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.9e-49 198.4 146 68.5
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.9e-49 198.4 146 65.1
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 3.9e-49 198.4 146 68.5
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 5.1e-49 198.0 142 66.2
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 6.6e-49 197.6 144 68.8
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 8.7e-49 197.2 146 69.2
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 2.5e-48 195.7 142 69.0
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 3.3e-48 195.3 144 69.4
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.3e-48 195.3 143 63.6
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 4.3e-48 194.9 147 66.7
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 4.3e-48 194.9 140 69.3
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 5.6e-48 194.5 146 67.1
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.6e-48 194.5 140 70.0
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 5.6e-48 194.5 144 65.3
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 5.6e-48 194.5 140 67.1
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 9.6e-48 193.7 144 69.4
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 9.6e-48 193.7 140 69.3
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 1.2e-47 193.4 146 67.1
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.2e-47 193.4 146 65.8
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 1.6e-47 193.0 142 65.5
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 1.6e-47 193.0 140 66.4
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.1e-47 192.6 146 67.8
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 2.1e-47 192.6 142 65.5
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.1e-47 192.6 147 66.7
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 2.8e-47 192.2 147 66.7
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 2.8e-47 192.2 158 62.0
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 3.6e-47 191.8 142 64.8
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 4.7e-47 191.4 140 67.9
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 6.2e-47 191.0 145 64.8
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 6.2e-47 191.0 142 64.1
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 6.2e-47 191.0 142 64.1
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.2e-47 191.0 146 67.1
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 6.2e-47 191.0 146 67.1
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 6.2e-47 191.0 144 65.3
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 8.1e-47 190.7 142 65.5
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 8.1e-47 190.7 142 64.8
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 8.1e-47 190.7 146 67.1
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 8.1e-47 190.7 147 66.0
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 8.1e-47 190.7 140 65.7
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 1.1e-46 190.3 142 63.4
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 1.8e-46 189.5 142 63.4
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 3.1e-46 188.7 144 67.4
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 3.1e-46 188.7 142 64.8
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 3.1e-46 188.7 142 64.8
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 3.1e-46 188.7 142 64.8
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.1e-46 188.7 142 63.4
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 3.1e-46 188.7 144 66.0
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 63.4
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 63.4
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 63.4
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 4.0e-46 188.3 142 63.4
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 4.0e-46 188.3 137 68.6
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 6.9e-46 187.6 142 61.3
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 6.9e-46 187.6 142 63.4
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 6.9e-46 187.6 142 63.4
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 6.9e-46 187.6 142 63.4
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 6.9e-46 187.6 142 63.4
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 6.9e-46 187.6 144 65.3
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 6.9e-46 187.6 144 63.9
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 9.0e-46 187.2 142 63.4
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 9.0e-46 187.2 146 63.7
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.2e-45 186.8 138 66.7
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 64.1
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 1.5e-45 186.4 142 64.1
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 1.5e-45 186.4 146 65.8
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 2.6e-45 185.7 191 53.9
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 2.6e-45 185.7 191 53.9
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 3.4e-45 185.3 142 62.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 3.4e-45 185.3 136 63.2
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 4.4e-45 184.9 138 66.7
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 4.4e-45 184.9 146 64.4
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 5.8e-45 184.5 146 65.1
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 7.6e-45 184.1 140 64.3
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 9.9e-45 183.7 142 63.4
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.7e-44 183.0 138 65.2
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 2.9e-44 182.2 146 65.1
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 3.8e-44 181.8 170 56.5
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.8e-44 181.8 138 64.5
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 4.9e-44 181.4 143 60.8
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 1.1e-43 180.3 141 61.0
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.9e-43 179.5 132 62.9
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 3.2e-43 178.7 140 64.3
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 4.2e-43 178.3 134 65.7
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 5.4e-43 177.9 146 61.6
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 5.4e-43 177.9 145 62.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 7.1e-43 177.6 132 62.1
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 9.3e-43 177.2 143 62.9
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 1.6e-42 176.4 141 59.6
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 3.5e-42 175.3 142 62.0
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 7.8e-42 174.1 137 60.6
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 1.3e-41 173.3 132 62.9
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 5.1e-41 171.4 141 58.9
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 5.1e-41 171.4 139 58.3
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 6.6e-41 171.0 189 47.6
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 8.7e-41 170.6 145 60.7
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 1.9e-40 169.5 132 61.4
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 4.3e-40 168.3 148 62.2
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 3.6e-39 165.2 139 57.6
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 6.2e-39 164.5 147 54.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 1.1e-38 163.7 115 70.4
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 3.1e-38 162.2 142 58.5
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 1.2e-37 160.2 144 58.3
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.0e-37 159.5 141 56.0
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 2.6e-37 159.1 175 51.4
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 9.9e-37 157.1 137 56.2
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 2.4e-35 152.5 141 52.5
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 3.2e-35 152.1 141 52.5
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 3.2e-35 152.1 137 54.0
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.2e-34 150.2 137 53.3
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 2.7e-34 149.1 146 54.8
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 7.9e-34 147.5 143 49.7
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 1.5e-32 143.3 102 66.7
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.1e-30 137.1 147 51.7
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 1.8e-30 136.3 138 47.8
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 1.3e-28 130.2 286 32.9
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.1e-26 122.9 127 48.0
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 7.4e-24 114.4 128 45.3
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 5.3e-22 108.2 75 66.7
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.5e-21 105.1 105 49.5
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.5e-21 105.1 105 49.5
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.5e-21 105.1 105 49.5
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.5e-18 95.5 69 63.8
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 4.6e-18 95.1 69 65.2
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 1.8e-17 93.2 78 56.4
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 6.7e-17 91.3 78 55.1
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 6.7e-17 91.3 87 55.2
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 9.0e-14 80.9 124 39.5
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 4.5e-13 78.6 115 45.2
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 5.9e-13 78.2 123 39.8
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 1.0e-12 77.4 57 61.4
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 1.0e-12 77.4 57 61.4
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 1.7e-12 76.6 65 52.3
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 1.6e-10 70.1 104 45.2
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 4.6e-10 68.6 76 52.6
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 1.8e-09 66.6 70 51.4
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.9e-09 65.5 62 43.5
Zm00001eb353660 Zea mays HOM05D003749 ORTHO05D004421 1.1e-08 63.9 79 43.0
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 2.5e-08 62.8 121 39.7
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 3.3e-08 62.4 107 42.1
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 7.4e-08 61.2 38 71.1
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 1.1e-06 57.4 34 70.6
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.4e-06 56.2 34 67.6
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.4e-06 56.2 39 66.7


User provided reference genes

Program Settings