Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4098 Papaver somniferum HOM05D004389 ORTHO05D005457 1.8e-99 365.9 183 100.0
PSO063G2909 Papaver somniferum HOM05D004389 ORTHO05D005457 4.8e-89 331.3 178 92.7
QL03p004595 Quercus lobata HOM05D004389 ORTHO05D005457 6.1e-76 287.7 174 80.5
Nn8g41138 Nelumbo nucifera HOM05D004389 ORTHO05D005457 1.8e-75 286.2 178 82.6
THA.LOC104805865 Tarenaya hassleriana HOM05D004389 ORTHO05D005457 2.3e-75 285.8 183 76.5
CiPaw.07G015300 Carya illinoinensis HOM05D004389 ORTHO05D005457 3.4e-74 282.0 178 78.1
Dinv23968 Davidia involucrata HOM05D004389 ORTHO05D005457 2.2e-73 279.3 179 79.3
Thecc.05G307100 Theobroma cacao HOM05D004389 ORTHO05D005457 2.2e-73 279.3 179 77.7
Haze_04228 Corylus avellana HOM05D004389 ORTHO05D005457 2.9e-73 278.9 179 78.8
GSVIVG01006266001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.9e-73 278.9 179 78.8
TAR383G0075 Trochodendron aralioides HOM05D004389 ORTHO05D005457 8.3e-73 277.3 180 78.9
Ciclev10018002m.g Citrus clementina HOM05D004389 ORTHO05D005457 1.1e-72 276.9 174 78.2
Cc02_g33710 Coffea canephora HOM05D004389 ORTHO05D005457 1.4e-72 276.6 175 79.4
PGR031G3032 Punica granatum HOM05D004389 ORTHO05D005457 1.4e-72 276.6 183 76.0
Haze_23899 Corylus avellana HOM05D004389 ORTHO05D005457 1.8e-72 276.2 178 78.1
TWI73G0431 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.8e-72 276.2 178 78.1
CSS0010710 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 2.4e-72 275.8 179 78.2
TAR626G0408 Trochodendron aralioides HOM05D004389 ORTHO05D005457 3.2e-72 275.4 179 79.3
Lj7A473T46 Lonicera japonica HOM05D004389 ORTHO05D005457 4.1e-72 275.0 181 77.3
Actinidia05713 Actinidia chinensis HOM05D004389 ORTHO05D005457 5.4e-72 274.6 176 79.5
COL.COLO4_29544 Corchorus olitorius HOM05D004389 ORTHO05D005457 5.4e-72 274.6 179 76.5
Duzib177G0146 Durio zibethinus HOM05D004389 ORTHO05D005457 5.4e-72 274.6 179 76.0
Atru.chr2.467 Acer truncatum HOM05D004389 ORTHO05D005457 2.7e-71 272.3 174 75.9
COL.COLO4_19842 Corchorus olitorius HOM05D004389 ORTHO05D005457 2.7e-71 272.3 179 76.0
CANSAT21G1920 Cannabis sativa HOM05D004389 ORTHO05D005457 3.5e-71 271.9 168 79.8
Gorai.004G242800 Gossypium raimondii HOM05D004389 ORTHO05D005457 3.5e-71 271.9 173 76.9
MBI16_g00840_MAGBIO Magnolia biondii HOM05D004389 ORTHO05D005457 3.5e-71 271.9 179 76.0
Cfa006553 Carpinus fangiana HOM05D004389 ORTHO05D003318 6.0e-71 271.2 173 79.2
MELO3C015339.2 Cucumis melo HOM05D004389 ORTHO05D005457 6.0e-71 271.2 177 78.5
Oeu045484.1 Olea europaea HOM05D004389 ORTHO05D005457 6.0e-71 271.2 175 79.4
Gohir.A08G211800 Gossypium hirsutum HOM05D004389 ORTHO05D005457 7.8e-71 270.8 173 76.3
Hma1.2p1_0666F.1_g199560 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.0e-70 270.4 183 76.0
Hma1.2p1_1362F.1_g278175 Hydrangea macrophylla HOM05D004389 ORTHO05D005457 1.0e-70 270.4 183 76.0
Nitab4.5_0002329g0100 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.0e-70 270.4 179 76.0
CANSAT21G2311 Cannabis sativa HOM05D004389 ORTHO05D005457 1.3e-70 270.0 170 78.2
Nitab4.5_0002659g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 1.3e-70 270.0 169 78.7
Aqoxy7G01925 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.7e-70 269.6 179 77.1
Eucgr.H04472 Eucalyptus grandis HOM05D004389 ORTHO05D005457 1.7e-70 269.6 175 76.6
RcHm_v2.0_Chr3g0454251 Rosa chinensis HOM05D004389 ORTHO05D005457 2.3e-70 269.2 172 77.9
Aa31sc17G40 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.0e-70 268.9 179 74.3
Nitab4.5_0000401g0080 Nicotiana tabacum HOM05D004389 ORTHO05D005457 5.0e-70 268.1 172 79.1
Gohir.D08G228501 Gossypium hirsutum HOM05D004389 ORTHO05D005457 6.6e-70 267.7 173 75.7
arahy.Tifrunner.gnm1.ann1.95MSG7 Arachis hypogaea HOM05D004389 ORTHO05D005457 8.6e-70 267.3 179 73.2
vmacro19638 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 8.6e-70 267.3 179 76.5
FAN05G1752 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.1e-69 266.9 172 77.3
HanXRQChr14g0460141 Helianthus annuus HOM05D004389 ORTHO05D005457 1.1e-69 266.9 176 76.1
Sc16g0008410 Simmondsia chinensis HOM05D004389 ORTHO05D005457 1.1e-69 266.9 175 74.9
CDE02G2165 Ceratophyllum demersum HOM05D004389 ORTHO05D005457 1.5e-69 266.5 178 77.0
MD04G1208300 Malus domestica HOM05D004389 ORTHO05D005457 1.5e-69 266.5 179 73.7
Potri.005G036500 Populus trichocarpa HOM05D004389 ORTHO05D005457 1.5e-69 266.5 179 73.7
DCAR_008416 Daucus carota HOM05D004389 ORTHO05D005457 1.9e-69 266.2 178 75.3
FAN05G0231 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 172 77.3
FAN05G0500 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 172 76.7
FAN05G0672 Fragaria x ananassa HOM05D004389 ORTHO05D005457 1.9e-69 266.2 172 77.3
Lj9C683G9 Lonicera japonica HOM05D004389 ORTHO05D005457 2.5e-69 265.8 177 75.1
Aa31sc17G90 Aethionema arabicum HOM05D004389 ORTHO05D005457 3.3e-69 265.4 179 73.2
Ciclev10002655m.g Citrus clementina HOM05D004389 ORTHO05D005457 3.3e-69 265.4 174 75.3
Sabra05G0037000 Salix brachista HOM05D004389 ORTHO05D005457 3.3e-69 265.4 175 74.9
Sp7g15350 Schrenkiella parvula HOM05D004389 ORTHO05D005457 3.3e-69 265.4 179 73.7
Thhalv10026361m.g Eutrema salsugineum HOM05D004389 ORTHO05D005457 4.3e-69 265.0 178 72.5
FAN14G5008 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.3e-69 265.0 172 76.2
Duzib128G0997 Durio zibethinus HOM05D004389 ORTHO05D005457 5.6e-69 264.6 179 73.2
Manes.09G078200 Manihot esculenta HOM05D004389 ORTHO05D005457 5.6e-69 264.6 179 75.4
CsaV3_1G039140 Cucumis sativus L. HOM05D004389 ORTHO05D005457 9.5e-69 263.8 177 77.4
FAN09G0842 Fragaria x ananassa HOM05D004389 ORTHO05D005457 9.5e-69 263.8 172 76.7
AL7G38020 Arabidopsis lyrata HOM05D004389 ORTHO05D005457 1.6e-68 263.1 171 74.3
C01p25870 Brassica napus HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 73.7
Cpa.g.sc58.76 Carica papaya HOM05D004389 ORTHO05D005457 1.6e-68 263.1 179 71.5
Glyma.05G086900 Glycine max HOM05D004389 ORTHO05D005457 1.6e-68 263.1 177 73.4
A01p20570 Brassica napus HOM05D004389 ORTHO05D005457 2.1e-68 262.7 179 74.3
BcaB03g14176 Brassica carinata HOM05D004389 ORTHO05D005457 2.8e-68 262.3 179 74.3
Glyma.06G240600 Glycine max HOM05D004389 ORTHO05D005457 2.8e-68 262.3 177 74.6
Rhsim05G0143800 Rhododendron simsii HOM05D004389 ORTHO05D005457 2.8e-68 262.3 179 76.0
LjContig00312_ERROPOS870357g0027537 Lotus japonicus HOM05D004389 ORTHO05D005457 3.6e-68 261.9 178 73.0
TPR.G33525 Trifolium pratense HOM05D004389 ORTHO05D005457 3.6e-68 261.9 177 76.3
AT4G16710 Arabidopsis thaliana HOM05D004389 ORTHO05D005457 4.7e-68 261.5 176 72.2
BcaNung00158 Brassica carinata HOM05D004389 ORTHO05D005457 4.7e-68 261.5 179 73.2
ECA236G1487 Erigeron canadensis HOM05D004389 ORTHO05D005457 4.7e-68 261.5 178 72.5
FAN18G1342 Fragaria x ananassa HOM05D004389 ORTHO05D005457 4.7e-68 261.5 169 77.5
Medtr3g115100 Medicago truncatula HOM05D004389 ORTHO05D005457 4.7e-68 261.5 177 73.4
Potri.013G025600 Populus trichocarpa HOM05D004389 ORTHO05D005457 4.7e-68 261.5 179 72.6
BcaC09g50404 Brassica carinata HOM05D004389 ORTHO05D005457 6.2e-68 261.2 179 73.2
Carub.0007s2468 Capsella rubella HOM05D004389 ORTHO05D005457 6.2e-68 261.2 176 72.7
CARHR223240 Cardamine hirsuta HOM05D004389 ORTHO05D005457 6.2e-68 261.2 175 73.1
BraA01t01985Z Brassica rapa HOM05D004389 ORTHO05D005457 8.0e-68 260.8 179 73.7
ClCG03G016830 Citrullus lanatus HOM05D004389 ORTHO05D005457 1.1e-67 260.4 168 78.6
Sed0018697 Sechium edule HOM05D004389 ORTHO05D005457 1.1e-67 260.4 173 75.7
BolC1t02532H Brassica oleracea HOM05D004389 ORTHO05D005457 1.4e-67 260.0 179 72.6
Prupe.6G329200 Prunus persica HOM05D004389 ORTHO05D005457 1.4e-67 260.0 172 75.0
Lj1g0012007 Lotus japonicus HOM05D004389 ORTHO05D005457 1.8e-67 259.6 178 71.9
EL10Ac4g09330 Beta vulgaris HOM05D004389 ORTHO05D005457 3.1e-67 258.8 175 72.6
AUR62006921 Chenopodium quinoa HOM05D004389 ORTHO05D005457 5.2e-67 258.1 178 74.2
Solyc12g009810.3 Solanum lycopersicum HOM05D004389 ORTHO05D005457 8.9e-67 257.3 175 73.7
FvH4_6g05471 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-66 256.9 172 75.6
PGSC0003DMG400030976 Solanum tuberosum HOM05D004389 ORTHO05D005457 1.5e-66 256.5 175 72.6
Hund07052 Selenicereus undatus HOM05D004389 ORTHO05D005457 2.0e-66 256.1 192 68.2
Sopen12g004700 Solanum pennellii HOM05D004389 ORTHO05D005457 2.0e-66 256.1 175 74.3
SGA_v2.0_scaffold11G05813 Striga asiatica HOM05D004389 ORTHO05D005457 2.0e-66 256.1 173 75.7
Ah.04g159790 Amaranthus hybridus HOM05D004389 ORTHO05D005457 2.6e-66 255.8 179 72.1
Sabra13G0026700 Salix brachista HOM05D004389 ORTHO05D005457 2.6e-66 255.8 206 65.5
Migut.N00707 Erythranthe guttata HOM05D004389 ORTHO05D005457 3.4e-66 255.4 171 75.4
Phvul.007G101500 Phaseolus vulgaris HOM05D004389 ORTHO05D005457 3.4e-66 255.4 177 74.0
SGA_v2.0_scaffold16G07733 Striga asiatica HOM05D004389 ORTHO05D005457 4.4e-66 255.0 172 76.2
CSS0006579 Camellia sinensis var. sinensis HOM05D004389 ORTHO05D005457 3.7e-65 251.9 175 74.3
Medtr3g096610 Medicago truncatula HOM05D004389 ORTHO05D005457 6.4e-65 251.1 173 74.6
PGSC0003DMG402007838 Solanum tuberosum HOM05D004389 ORTHO05D005457 6.4e-65 251.1 175 72.6
AUR62005084 Chenopodium quinoa HOM05D004389 ORTHO05D005457 8.3e-65 250.8 177 71.8
unitig_747.g21568 Utricularia gibba HOM05D004389 ORTHO05D005457 8.3e-65 250.8 179 73.2
HPP92_010418 Vanilla planifolia HOM05D004389 ORTHO05D005457 1.1e-64 250.4 169 75.7
TWI53G0891 Tripterygium wilfordii HOM05D004389 ORTHO05D005457 1.4e-64 250.0 168 75.0
FvH4_5g27531 Fragaria vesca HOM05D004389 ORTHO05D005457 1.9e-64 249.6 161 77.6
Zm00001eb272600 Zea mays HOM05D004389 ORTHO05D005457 3.2e-64 248.8 165 75.8
AUR62000890 Chenopodium quinoa HOM05D004389 ORTHO05D005457 4.1e-64 248.4 178 71.9
ATR0626G001 Amborella trichopoda HOM05D004389 ORTHO05D005457 1.6e-63 246.5 181 69.1
Zm00001eb264580 Zea mays HOM05D004389 ORTHO05D005457 1.3e-62 243.4 172 73.3
Lsat_1_v5_gn_7_96081 Lactuca sativa HOM05D004389 ORTHO05D005457 1.7e-62 243.0 177 71.8
vmacro08924 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 6.6e-62 241.1 220 60.5
GSVIVG01000019001 Vitis vinifera HOM05D004389 ORTHO05D005457 2.5e-61 239.2 157 79.0
AUR62000567 Chenopodium quinoa HOM05D004389 ORTHO05D005457 2.8e-60 235.7 160 74.4
SEGI_15909 Sequoiadendron giganteum HOM05D004389 ORTHO05D005457 4.0e-59 231.9 175 66.3
Rhsim05G0010600 Rhododendron simsii HOM05D004389 ORTHO05D005457 6.8e-59 231.1 216 59.7
HanXRQChr04g0126711 Helianthus annuus HOM05D004389 ORTHO05D005457 1.2e-58 230.3 177 70.1
Peaxi162Scf00523g00530 Petunia axillaris HOM05D004389 ORTHO05D005457 1.5e-58 229.9 172 69.2
RcHm_v2.0_Chr7g0218901 Rosa chinensis HOM05D004389 ORTHO05D005457 4.1e-56 221.9 146 74.0
Psat0s1802g0120 Pisum sativum HOM05D004389 ORTHO05D005457 7.8e-55 217.6 150 73.3
Psat0s2070g0160 Pisum sativum HOM05D004389 ORTHO05D005457 1.7e-54 216.5 150 72.7
Lalb_Chr05g0219701 Lupinus albus HOM05D004389 ORTHO05D005457 2.8e-52 209.1 171 63.7
Dinv40263 Davidia involucrata HOM05D004389 ORTHO05D005457 1.1e-48 197.2 120 82.5
vmacro22564 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 1.9e-45 186.4 170 61.2
Pp3c11_4930 Physcomitrium patens HOM05D004389 ORTHO05D005457 5.6e-45 184.9 165 54.5
AagrBONN_evm.TU.Sc2ySwM_117.3666 Anthoceros agrestis HOM05D004389 ORTHO05D005457 1.1e-43 180.6 162 53.7
Peaxi162Scf02135g00022 Petunia axillaris HOM05D004389 ORTHO05D005457 1.1e-43 180.6 169 59.8
Aqoxy4G02160 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 3.1e-43 179.1 114 79.8
Prupe.5G030200 Prunus persica HOM05D004389 ORTHO05D005457 3.1e-43 179.1 118 77.1
Os02g0467700 Oryza sativa ssp. japonica HOM05D004389 ORTHO05D005457 5.2e-43 178.3 115 75.7
SMO171G0140 Selaginella moellendorffii HOM05D004389 ORTHO05D005457 6.9e-43 177.9 165 53.3
AagrBONN_evm.TU.Sc2ySwM_344.4143 Anthoceros agrestis HOM05D007251 ORTHO05D009266 3.4e-42 175.6 179 49.2
Mapoly0013s0083 Marchantia polymorpha HOM05D004389 ORTHO05D005457 2.2e-41 172.9 168 51.2
Cre13.g585850 Chlamydomonas reinhardtii HOM05D004389 ORTHO05D005457 3.6e-36 155.6 172 49.4
CBR_g24390 Chara braunii HOM05D004389 ORTHO05D005457 1.1e-35 154.1 222 42.8
vmacro15018 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 3.1e-35 152.5 164 54.3
CAN.G551.74 Capsicum annuum HOM05D004389 ORTHO05D005457 4.5e-34 148.7 101 73.3
PRCOL_00003734 Prasinoderma coloniale HOM05D004389 ORTHO05D005457 5.8e-34 148.3 161 50.3
vmacro22211 Vaccinium macrocarpon HOM05D004389 ORTHO05D005457 9.9e-34 147.5 195 49.7
Zm00001eb058290 Zea mays HOM05D004389 ORTHO05D005457 1.1e-32 144.1 83 80.7
Aqoxy5G02271 Aquilegia oxysepala HOM05D004389 ORTHO05D005457 1.9e-32 143.3 93 78.5
MCO09G816 Micromonas commoda HOM05D004389 ORTHO05D005457 1.6e-31 140.2 161 48.4
Ca_16978_v3 Cicer arietinum L. HOM05D004389 ORTHO05D005457 4.6e-31 138.7 86 80.2
TPR.G33563 Trifolium pratense HOM05D004389 ORTHO05D005457 1.3e-30 137.1 83 80.7
Nitab4.5_0006964g0010 Nicotiana tabacum HOM05D004389 ORTHO05D005457 4.8e-28 128.6 86 74.4
RhsimUnG0192500 Rhododendron simsii HOM05D004389 ORTHO05D005457 1.1e-27 127.5 114 63.2
TPR.G30972 Trifolium pratense HOM05D004389 ORTHO05D005457 2.4e-27 126.3 88 70.5
SHI18162 Sapria himalayana HOM05D004389 ORTHO05D005457 3.1e-27 125.9 139 50.4
MD15G1188200 Malus domestica HOM05D004389 ORTHO05D005457 1.1e-24 117.5 117 54.7
QL07p009462 Quercus lobata HOM05D004389 ORTHO05D005457 1.4e-24 117.1 75 77.3
FvH4_6g10990 Fragaria vesca HOM05D004389 ORTHO05D005457 1.2e-23 114.0 90 65.6
Zm00001eb380920 Zea mays HOM05D004389 ORTHO05D005457 4.8e-20 102.1 82 64.6
Actinidia39666 Actinidia chinensis HOM05D004389 ORTHO05D056204 1.3e-17 94.0 144 44.4
vmacro15154 Vaccinium macrocarpon HOM05D004389 ORTHO05D022937 6.7e-14 81.6 50 76.0
Cfa025624 Carpinus fangiana HOM05D004389 ORTHO05D125512 6.3e-12 75.1 216 32.4
QL07p009230 Quercus lobata HOM05D004389 ORTHO05D005457 1.8e-11 73.6 85 50.6
SHI18161 Sapria himalayana HOM05D004389 ORTHO05D005457 2.0e-10 70.1 62 53.2
Medtr6g452950 Medicago truncatula HOM05D029366 ORTHO05D022937 1.3e-09 67.4 42 71.4
HPP92_010328 Vanilla planifolia HOM05D004389 ORTHO05D022937 6.5e-09 65.1 62 51.6
vmacro17239 Vaccinium macrocarpon HOM05D040504 ORTHO05D426804 1.4e-08 63.9 150 34.0


User provided reference genes

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