Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G4024 Papaver somniferum HOM05D004272 ORTHO05D005020 2.4e-195 685.3 339 100.0
PSO170G2167 Papaver somniferum HOM05D004272 ORTHO05D005020 5.5e-171 604.4 339 90.0
PSO170G2262 Papaver somniferum HOM05D004272 ORTHO05D005020 4.8e-143 511.5 341 76.2
GSVIVG01034890001 Vitis vinifera HOM05D004272 ORTHO05D005020 1.4e-110 403.7 336 60.7
Aqoxy6G00139 Aquilegia oxysepala HOM05D004272 ORTHO05D005020 1.6e-109 400.2 343 61.2
CANSAT25G2208 Cannabis sativa HOM05D004272 ORTHO05D005020 4.3e-107 392.1 318 60.4
Potri.013G115400 Populus trichocarpa HOM05D004272 ORTHO05D005020 2.8e-106 389.4 344 57.0
Manes.18G099100 Manihot esculenta HOM05D004272 ORTHO05D005020 8.1e-106 387.9 340 58.5
Prupe.8G052200 Prunus persica HOM05D004272 ORTHO05D005020 2.4e-105 386.3 336 58.3
Dinv12903 Davidia involucrata HOM05D004272 ORTHO05D005020 6.8e-105 384.8 336 58.9
MD10G1045300 Malus domestica HOM05D004272 ORTHO05D005020 8.9e-105 384.4 338 58.9
QL02p034274 Quercus lobata HOM05D004272 ORTHO05D005020 2.0e-104 383.3 321 59.2
CSS0015299 Camellia sinensis var. sinensis HOM05D004272 ORTHO05D005020 9.9e-104 380.9 339 58.1
THA.LOC104800104 Tarenaya hassleriana HOM05D004272 ORTHO05D005020 1.7e-103 380.2 324 57.1
Sabra13G0097600 Salix brachista HOM05D004272 ORTHO05D005020 2.2e-103 379.8 340 56.8
Cc00_g04120 Coffea canephora HOM05D004272 ORTHO05D005020 2.9e-103 379.4 343 58.9
Ciclev10001727m.g Citrus clementina HOM05D004272 ORTHO05D005020 3.8e-103 379.0 339 58.4
CiPaw.16G063800 Carya illinoinensis HOM05D004272 ORTHO05D005020 6.4e-103 378.3 329 57.8
CiPaw.15G083400 Carya illinoinensis HOM05D004272 ORTHO05D005020 8.4e-103 377.9 345 56.5
RcHm_v2.0_Chr6g0272381 Rosa chinensis HOM05D004272 ORTHO05D005020 2.4e-102 376.3 330 57.6
Medtr1g096990 Medicago truncatula HOM05D004272 ORTHO05D005020 5.4e-102 375.2 334 57.2
Cpa.g.sc64.134 Carica papaya HOM05D004272 ORTHO05D005020 7.1e-102 374.8 338 58.3
TPR.G15693 Trifolium pratense HOM05D004272 ORTHO05D005020 7.1e-102 374.8 335 57.0
Carub.0002s1862 Capsella rubella HOM05D004272 ORTHO05D005020 1.2e-101 374.0 338 55.6
Oeu004773.1 Olea europaea HOM05D004272 ORTHO05D005020 1.6e-101 373.6 351 56.1
Peaxi162Scf00268g01426 Petunia axillaris HOM05D004272 ORTHO05D005020 1.7e-100 370.2 333 57.4
Sp5g26920 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.7e-100 370.2 346 55.2
SpUn0020_0060 Schrenkiella parvula HOM05D004272 ORTHO05D005020 1.7e-100 370.2 346 55.2
TAR381G1009 Trochodendron aralioides HOM05D004272 ORTHO05D005020 1.7e-100 370.2 314 61.1
Aa31LG4G8760 Aethionema arabicum HOM05D004272 ORTHO05D005020 2.3e-100 369.8 342 54.7
Gorai.006G131400 Gossypium raimondii HOM05D004272 ORTHO05D005020 3.9e-100 369.0 342 54.4
Gohir.A09G116800 Gossypium hirsutum HOM05D004272 ORTHO05D005020 6.6e-100 368.2 342 54.1
Thhalv10018624m.g Eutrema salsugineum HOM05D004272 ORTHO05D005020 8.7e-100 367.9 347 55.0
Oeu030010.1 Olea europaea HOM05D004272 ORTHO05D005020 1.1e-99 367.5 337 57.9
FAN20G0830 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.9e-99 366.7 319 57.4
FvH4_2g12360 Fragaria vesca HOM05D004272 ORTHO05D005020 2.5e-99 366.3 319 56.7
FAN24G2414 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.5e-99 366.3 319 56.7
arahy.Tifrunner.gnm1.ann1.CBRY2G Arachis hypogaea HOM05D004272 ORTHO05D005020 4.3e-99 365.5 351 55.6
Eucgr.F04145 Eucalyptus grandis HOM05D004272 ORTHO05D005020 4.3e-99 365.5 342 54.1
Phvul.007G087900 Phaseolus vulgaris HOM05D004272 ORTHO05D005020 4.3e-99 365.5 330 55.2
Gohir.D09G113700 Gossypium hirsutum HOM05D004272 ORTHO05D005020 5.6e-99 365.2 342 53.8
Lalb_Chr06g0161911 Lupinus albus HOM05D004272 ORTHO05D005020 5.6e-99 365.2 338 55.0
C06p45930 Brassica napus HOM05D004272 ORTHO05D005020 7.3e-99 364.8 332 56.6
Glyma.10G218100 Glycine max HOM05D004272 ORTHO05D005020 7.3e-99 364.8 334 54.2
BcaC08g46620 Brassica carinata HOM05D004272 ORTHO05D005020 9.6e-99 364.4 332 56.3
BolC6t39646H Brassica oleracea HOM05D004272 ORTHO05D005020 9.6e-99 364.4 332 56.3
AT1G71860 Arabidopsis thaliana HOM05D004272 ORTHO05D005020 1.2e-98 364.0 338 54.4
arahy.Tifrunner.gnm1.ann1.6Q1IL7 Arachis hypogaea HOM05D004272 ORTHO05D005020 1.2e-98 364.0 348 55.7
BraA07t31367Z Brassica rapa HOM05D004272 ORTHO05D005020 1.2e-98 364.0 339 55.8
Ca_10628_v3 Cicer arietinum L. HOM05D004272 ORTHO05D005020 1.2e-98 364.0 334 55.1
MELO3C018159.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.6e-98 363.6 330 55.5
Thecc.08G200200 Theobroma cacao HOM05D004272 ORTHO05D005020 1.6e-98 363.6 333 55.6
BcaC08g46618 Brassica carinata HOM05D004272 ORTHO05D005020 2.1e-98 363.2 342 56.7
FAN27G2909 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.8e-98 362.8 319 56.7
VMungo0720G1438 Vigna mungo HOM05D004272 ORTHO05D005020 2.8e-98 362.8 330 53.9
A07p38020 Brassica napus HOM05D004272 ORTHO05D005020 8.1e-98 361.3 339 55.2
ATR0687G002 Amborella trichopoda HOM05D004272 ORTHO05D005020 1.8e-97 360.1 311 56.6
HPP92_003132 Vanilla planifolia HOM05D004272 ORTHO05D005020 1.8e-97 360.1 336 53.9
AL2G31440 Arabidopsis lyrata HOM05D004272 ORTHO05D005020 4.0e-97 359.0 339 53.7
Glyma.20G173700 Glycine max HOM05D004272 ORTHO05D005020 4.0e-97 359.0 337 54.3
Lj5g0022070 Lotus japonicus HOM05D004272 ORTHO05D005020 4.0e-97 359.0 338 55.9
Rhsim06G0099300 Rhododendron simsii HOM05D004272 ORTHO05D005020 6.9e-97 358.2 379 52.2
Rhsim11G0061700 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.0e-97 357.8 367 52.0
Rhsim11G0063200 Rhododendron simsii HOM05D004272 ORTHO05D005020 9.0e-97 357.8 367 52.0
Actinidia02597 Actinidia chinensis HOM05D004272 ORTHO05D005020 1.5e-96 357.1 331 56.8
Hma1.2p1_0510F.1_g168790 Hydrangea macrophylla HOM05D004272 ORTHO05D005020 2.6e-96 356.3 315 59.0
Sed0022323 Sechium edule HOM05D004272 ORTHO05D005020 5.8e-96 355.1 332 55.4
Atru.chr13.1851 Acer truncatum HOM05D004272 ORTHO05D005020 7.6e-96 354.8 370 52.7
Nitab4.5_0006059g0040 Nicotiana tabacum HOM05D004272 ORTHO05D005020 2.9e-95 352.8 334 55.1
Sopen06g023970 Solanum pennellii HOM05D004272 ORTHO05D005020 2.9e-95 352.8 334 55.7
CsaV3_7G024250 Cucumis sativus L. HOM05D004272 ORTHO05D005020 3.8e-95 352.4 316 55.7
MD05G1039700 Malus domestica HOM05D004272 ORTHO05D005020 1.1e-94 350.9 318 57.5
Solyc11g016990.3 Solanum lycopersicum HOM05D004272 ORTHO05D005020 2.4e-94 349.7 339 56.9
Lsat_1_v5_gn_5_157280 Lactuca sativa HOM05D004272 ORTHO05D005020 3.2e-94 349.4 325 56.3
Solyc06g065480.4 Solanum lycopersicum HOM05D004272 ORTHO05D005020 4.2e-94 349.0 336 55.4
Haze_17897 Corylus avellana HOM05D004272 ORTHO05D005020 5.4e-94 348.6 400 48.8
Migut.N03339 Erythranthe guttata HOM05D004272 ORTHO05D005020 3.5e-93 345.9 312 57.7
Sc01g0001660 Simmondsia chinensis HOM05D004272 ORTHO05D005020 6.0e-93 345.1 334 55.1
Sopen11g008950 Solanum pennellii HOM05D004272 ORTHO05D005020 7.8e-93 344.7 339 56.0
SalBow6G4901 Salvia bowleyana HOM05D004272 ORTHO05D005020 3.0e-92 342.8 337 54.6
Migut.C01228 Erythranthe guttata HOM05D004272 ORTHO05D005020 8.7e-92 341.3 334 53.3
SalBow6G0059 Salvia bowleyana HOM05D004272 ORTHO05D005020 1.9e-91 340.1 337 54.3
HanXRQChr13g0388201 Helianthus annuus HOM05D004272 ORTHO05D005020 4.3e-91 339.0 324 56.2
Duzib116G0407 Durio zibethinus HOM05D004272 ORTHO05D005020 7.3e-91 338.2 386 48.2
CARHR289070 Cardamine hirsuta HOM05D004272 ORTHO05D005020 9.0e-89 331.3 260 60.4
Hund27072 Selenicereus undatus HOM05D004272 ORTHO05D005020 9.9e-88 327.8 311 55.0
CAN.G199.25 Capsicum annuum HOM05D004272 ORTHO05D005020 6.4e-87 325.1 257 63.0
DCAR_010068 Daucus carota HOM05D004272 ORTHO05D005020 9.3e-86 321.2 310 54.5
DCAR_014268 Daucus carota HOM05D004272 ORTHO05D005020 1.2e-85 320.9 354 50.0
TWI60G0092 Tripterygium wilfordii HOM05D004272 ORTHO05D005020 2.1e-85 320.1 326 50.9
vmacro12508 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 2.7e-85 319.7 307 54.4
RcHm_v2.0_Chr3g0456471 Rosa chinensis HOM05D004272 ORTHO05D005020 7.9e-85 318.2 324 52.8
RcHm_v2.0_Chr7g0181531 Rosa chinensis HOM05D004272 ORTHO05D005020 1.0e-84 317.8 336 52.7
EL10Ac1g00062 Beta vulgaris HOM05D004272 ORTHO05D005020 3.9e-84 315.8 317 52.4
AUR62004668 Chenopodium quinoa HOM05D004272 ORTHO05D005020 6.7e-84 315.1 259 59.1
Nitab4.5_0000159g0070 Nicotiana tabacum HOM05D004272 ORTHO05D005020 8.7e-84 314.7 264 60.2
Lj7C302G8 Lonicera japonica HOM05D004272 ORTHO05D005020 1.5e-83 313.9 384 48.2
FvH4_5g14850 Fragaria vesca HOM05D004272 ORTHO05D005020 5.6e-83 312.0 340 52.6
FAN18G3209 Fragaria x ananassa HOM05D004272 ORTHO05D005020 1.6e-82 310.5 340 52.4
ClCG09G010370 Citrullus lanatus HOM05D004272 ORTHO05D005020 2.8e-82 309.7 304 52.6
FAN08G2250 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.8e-82 309.7 318 53.1
unitig_61.g26072 Utricularia gibba HOM05D004272 ORTHO05D005020 3.7e-82 309.3 328 50.0
Nitab4.5_0003518g0050 Nicotiana tabacum HOM05D004272 ORTHO05D005020 6.2e-82 308.5 260 60.0
Nn5g27830 Nelumbo nucifera HOM05D004272 ORTHO05D005020 1.4e-81 307.4 319 50.8
FAN13G2363 Fragaria x ananassa HOM05D004272 ORTHO05D005020 2.6e-80 303.1 320 52.8
Hund16809 Selenicereus undatus HOM05D004272 ORTHO05D005020 1.3e-79 300.8 321 51.4
Manes.02G190000 Manihot esculenta HOM05D004272 ORTHO05D005020 2.9e-79 299.7 209 65.1
SGA_v2.0_scaffold149G36610 Striga asiatica HOM05D004272 ORTHO05D005020 2.1e-77 293.5 372 46.0
ECA248G3752 Erigeron canadensis HOM05D004272 ORTHO05D005020 1.3e-76 290.8 326 50.6
HanXRQChr13g0388211 Helianthus annuus HOM05D004272 ORTHO05D005020 1.9e-75 287.0 296 51.0
CAN.G61.12 Capsicum annuum HOM05D004272 ORTHO05D005020 4.3e-75 285.8 245 58.8
AUR62023587 Chenopodium quinoa HOM05D004272 ORTHO05D005020 4.8e-74 282.3 235 58.3
arahy.Tifrunner.gnm1.ann1.E3548W Arachis hypogaea HOM05D004272 ORTHO05D005020 3.4e-72 276.2 227 59.9
Prupe.1G402600 Prunus persica HOM05D004272 ORTHO05D005020 2.9e-71 273.1 326 49.1
MD09G1287400 Malus domestica HOM05D004272 ORTHO05D005020 1.9e-70 270.4 332 48.5
Psat6g189360 Pisum sativum HOM05D004272 ORTHO05D005020 1.2e-69 267.7 267 53.6
MELO3C023674.2 Cucumis melo HOM05D004272 ORTHO05D005020 1.5e-67 260.8 251 52.6
Hund16808 Selenicereus undatus HOM05D004272 ORTHO05D005020 3.3e-67 259.6 325 44.9
vmacro00781 Vaccinium macrocarpon HOM05D004272 ORTHO05D005020 1.4e-65 254.2 413 39.0
Pp3c13_6130 Physcomitrium patens HOM05D004272 ORTHO05D005020 6.1e-61 238.8 308 42.9
Os12g0174800 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 1.8e-60 237.3 309 42.4
SHI09047 Sapria himalayana HOM05D004272 ORTHO05D005020 1.5e-59 234.2 265 47.9
Ah.05g177840 Amaranthus hybridus HOM05D004272 ORTHO05D005020 2.5e-59 233.4 307 45.0
Mapoly0167s0026 Marchantia polymorpha HOM05D004272 ORTHO05D005020 4.3e-59 232.6 337 40.4
ECA248G0749 Erigeron canadensis HOM05D004272 ORTHO05D005020 9.7e-59 231.5 258 49.2
Nitab4.5_0029014g0010 Nicotiana tabacum HOM05D004272 ORTHO05D005020 9.7e-59 231.5 265 48.7
Pp3c3_2290 Physcomitrium patens HOM05D004272 ORTHO05D005020 3.1e-57 226.5 307 42.0
SMO347G0125 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 5.0e-55 219.2 311 41.8
Os11g0180200 Oryza sativa ssp. japonica HOM05D004272 ORTHO05D005020 3.3e-51 206.5 243 50.2
SGA_v2.0_scaffold483G52343 Striga asiatica HOM05D004272 ORTHO05D005020 8.2e-50 201.8 147 63.9
AagrBONN_evm.TU.Sc2ySwM_228.1486 Anthoceros agrestis HOM05D004272 ORTHO05D005020 4.1e-49 199.5 274 37.2
SEGI_33079 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 8.0e-45 185.3 161 53.4
Potri.019G086001 Populus trichocarpa HOM05D004272 ORTHO05D005020 1.8e-44 184.1 134 61.9
CDE12G0366 Ceratophyllum demersum HOM05D004272 ORTHO05D005020 8.8e-44 181.8 281 39.5
CBR_g17924 Chara braunii HOM05D004272 ORTHO05D005020 2.6e-43 180.3 206 44.7
Cre12.g524450 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 9.7e-43 178.3 303 37.0
Zm00001eb091350 Zea mays HOM05D004272 ORTHO05D005020 1.3e-42 177.9 321 37.4
Dinv41680 Davidia involucrata HOM05D004272 ORTHO05D005020 4.5e-40 169.5 112 68.8
Zm00001eb138930 Zea mays HOM05D004272 ORTHO05D005020 5.0e-39 166.0 251 40.6
PGSC0003DMG400024543 Solanum tuberosum HOM05D004272 ORTHO05D005020 6.1e-37 159.1 138 57.2
CBR_g49956 Chara braunii HOM05D004272 ORTHO05D005020 1.3e-34 151.4 231 39.0
Haze_26606 Corylus avellana HOM05D004272 ORTHO05D005020 2.4e-33 147.1 246 37.0
Haze_26549 Corylus avellana HOM05D004272 ORTHO05D005020 7.2e-30 135.6 282 34.0
TPR.G15698 Trifolium pratense HOM05D004272 ORTHO05D005020 6.8e-28 129.0 88 64.8
PSO170G3665 Papaver somniferum HOM05D004272 ORTHO05D005020 1.1e-25 121.7 211 39.8
SMO166G0076 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.3e-23 114.8 278 29.1
SMO119G0089 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 1.1e-22 111.7 232 31.9
CBR_g53623 Chara braunii HOM05D004272 ORTHO05D005020 4.7e-21 106.3 109 42.2
SMO351G0156 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 6.1e-21 105.9 157 38.9
CBR_g53619 Chara braunii HOM05D004272 ORTHO05D005020 2.3e-20 104.0 109 43.1
SEGI_21150 Sequoiadendron giganteum HOM05D004272 ORTHO05D005020 2.3e-20 104.0 115 49.6
SGA_v2.0_scaffold1053G53812 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-19 101.3 68 69.1
SGA_v2.0_scaffold322G48619 Striga asiatica HOM05D004272 ORTHO05D005020 1.5e-19 101.3 68 69.1
SGA_v2.0_scaffold386G50488 Striga asiatica HOM05D004272 ORTHO05D005020 3.4e-19 100.1 68 67.6
PRCOL_00003935 Prasinoderma coloniale HOM05D004272 ORTHO05D005020 9.8e-19 98.6 313 28.1
Cfa026335 Carpinus fangiana HOM05D003314 ORTHO05D004164 2.2e-18 97.4 261 29.9
Cre09.g389949 Chlamydomonas reinhardtii HOM05D004272 ORTHO05D005020 8.3e-18 95.5 360 27.2
SMO115G0188 Selaginella moellendorffii HOM05D004272 ORTHO05D005020 7.0e-17 92.4 103 42.7
Cfa022797 Carpinus fangiana HOM05D004272 ORTHO05D005020 4.5e-16 89.7 293 28.3
Glyma.20G173900 Glycine max HOM05D004272 ORTHO05D005020 4.3e-14 83.2 60 61.7
Psat6g014560 Pisum sativum HOM05D004272 ORTHO05D005020 3.4e-11 73.6 80 48.8


User provided reference genes

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