Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3970 Papaver somniferum HOM05D004623 ORTHO05D005100 9.5e-239 830.1 525 100.0
PSO063G4918 Papaver somniferum HOM05D004623 ORTHO05D005100 1.5e-228 796.2 535 95.7
Aqoxy7G00024 Aquilegia oxysepala HOM05D004623 ORTHO05D005100 7.7e-164 581.3 476 71.8
Eucgr.D01683 Eucalyptus grandis HOM05D004623 ORTHO05D005100 1.3e-163 580.5 479 72.7
RcHm_v2.0_Chr7g0186861 Rosa chinensis HOM05D004623 ORTHO05D005100 1.7e-163 580.1 471 72.4
TAR629G1871 Trochodendron aralioides HOM05D004623 ORTHO05D005100 2.2e-163 579.7 478 72.4
MD14G1126200 Malus domestica HOM05D004623 ORTHO05D005100 5.0e-163 578.6 470 72.3
arahy.Tifrunner.gnm1.ann1.6R22RC Arachis hypogaea HOM05D004623 ORTHO05D005100 1.2e-161 573.9 470 73.2
CiPaw.12G077700 Carya illinoinensis HOM05D004623 ORTHO05D005100 1.4e-160 570.5 473 71.9
Ca_09948_v3 Cicer arietinum L. HOM05D004623 ORTHO05D005100 3.0e-160 569.3 467 72.6
FAN04G2529 Fragaria x ananassa HOM05D004623 ORTHO05D005100 5.2e-160 568.5 483 65.8
Lalb_Chr21g0311621 Lupinus albus HOM05D004623 ORTHO05D005100 2.6e-159 566.2 468 72.0
Medtr1g077850 Medicago truncatula HOM05D004623 ORTHO05D005100 2.6e-159 566.2 470 73.2
PGR031G2083 Punica granatum HOM05D004623 ORTHO05D005100 3.4e-159 565.8 456 72.6
VMungo0720G2137 Vigna mungo HOM05D004623 ORTHO05D005100 4.4e-159 565.5 469 71.6
Atru.chr9.1891 Acer truncatum HOM05D004623 ORTHO05D005100 5.7e-159 565.1 440 75.0
Psat6g053240 Pisum sativum HOM05D004623 ORTHO05D005100 5.7e-159 565.1 472 73.1
Prupe.5G129200 Prunus persica HOM05D004623 ORTHO05D005100 4.8e-158 562.0 469 72.5
Glyma.20G217500 Glycine max HOM05D004623 ORTHO05D005100 2.4e-157 559.7 461 73.1
TAR375G0778 Trochodendron aralioides HOM05D004623 ORTHO05D005100 3.1e-157 559.3 473 72.9
GSVIVG01019647001 Vitis vinifera HOM05D004623 ORTHO05D005100 3.1e-157 559.3 427 78.5
CDE09G0653 Ceratophyllum demersum HOM05D004623 ORTHO05D005100 4.1e-157 558.9 477 71.3
ClCG10G000820 Citrullus lanatus HOM05D004623 ORTHO05D005100 2.7e-156 556.2 484 69.6
TPR.G34807 Trifolium pratense HOM05D004623 ORTHO05D005100 2.9e-155 552.7 453 73.7
Nn1g00375 Nelumbo nucifera HOM05D004623 ORTHO05D005100 5.0e-155 552.0 482 69.1
CSS0032200 Camellia sinensis var. sinensis HOM05D004623 ORTHO05D005100 1.1e-154 550.8 482 70.1
TWI81G0490 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 2.5e-154 549.7 472 69.5
Dinv12926 Davidia involucrata HOM05D004623 ORTHO05D005100 7.2e-154 548.1 443 73.4
Gorai.004G129800 Gossypium raimondii HOM05D004623 ORTHO05D005100 7.2e-154 548.1 504 66.7
Rhsim02G0251800 Rhododendron simsii HOM05D004623 ORTHO05D005100 7.2e-154 548.1 495 63.2
Cc08_g16710 Coffea canephora HOM05D004623 ORTHO05D005100 2.1e-153 546.6 427 75.2
ATR0620G132 Amborella trichopoda HOM05D004623 ORTHO05D005100 4.7e-153 545.4 381 80.8
FvH4_5g10960 Fragaria vesca HOM05D004623 ORTHO05D005100 4.7e-153 545.4 476 70.8
arahy.Tifrunner.gnm1.ann1.CHU5UJ Arachis hypogaea HOM05D004623 ORTHO05D005100 6.1e-153 545.0 470 70.9
Hma1.2p1_0456F.1_g156590 Hydrangea macrophylla HOM05D004623 ORTHO05D005100 1.4e-152 543.9 466 72.1
Sed0004618 Sechium edule HOM05D004623 ORTHO05D005100 1.8e-152 543.5 468 68.8
FAN18G3535 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.8e-152 541.6 476 70.2
CANSAT21G1410 Cannabis sativa HOM05D004623 ORTHO05D005100 1.2e-151 540.8 467 70.7
Ciclev10019829m.g Citrus clementina HOM05D004623 ORTHO05D005100 2.0e-151 540.0 481 69.9
Thecc.03G221500 Theobroma cacao HOM05D004623 ORTHO05D005100 5.7e-151 538.5 473 68.9
Hund11352 Selenicereus undatus HOM05D004623 ORTHO05D005100 1.7e-150 537.0 457 70.7
SalBow1G2042 Salvia bowleyana HOM05D004623 ORTHO05D005100 2.2e-150 536.6 464 70.9
Cfa011928 Carpinus fangiana HOM05D004623 ORTHO05D005100 3.7e-150 535.8 462 69.7
FAN13G2046 Fragaria x ananassa HOM05D004623 ORTHO05D005100 3.7e-150 535.8 464 71.8
FAN08G2217 Fragaria x ananassa HOM05D004623 ORTHO05D005100 6.3e-150 535.0 469 70.1
CiPaw.11G112800 Carya illinoinensis HOM05D004623 ORTHO05D005100 3.1e-149 532.7 468 68.4
Aa31LG9G240 Aethionema arabicum HOM05D004623 ORTHO05D005100 7.0e-149 531.6 450 69.6
TWI15G0843 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 7.0e-149 531.6 468 69.0
COL.COLO4_10792 Corchorus olitorius HOM05D004623 ORTHO05D005100 1.6e-148 530.4 471 67.7
Haze_09171 Corylus avellana HOM05D004623 ORTHO05D005100 2.0e-148 530.0 466 66.7
Lj5g0020025 Lotus japonicus HOM05D004623 ORTHO05D005100 2.7e-148 529.6 400 77.2
MSTRG.13716 Avicennia marina HOM05D004623 ORTHO05D005100 1.0e-147 527.7 453 70.9
Phvul.L005101 Phaseolus vulgaris HOM05D004623 ORTHO05D005100 2.9e-147 526.2 460 69.8
SGA_v2.0_scaffold127G33962 Striga asiatica HOM05D004623 ORTHO05D005100 5.0e-147 525.4 457 69.6
Migut.E00632 Erythranthe guttata HOM05D004623 ORTHO05D005100 8.6e-147 524.6 480 67.7
AUR62007050 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.1e-146 524.2 482 67.6
Nitab4.5_0007063g0040 Nicotiana tabacum HOM05D004623 ORTHO05D005100 1.5e-146 523.9 472 67.6
Gohir.D08G123000 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.3e-146 522.3 472 67.6
Dinv16877 Davidia involucrata HOM05D004623 ORTHO05D005100 7.3e-146 521.5 424 73.3
Gohir.A08G110100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.8e-145 519.6 472 67.2
MELO3C013775.2 Cucumis melo HOM05D004623 ORTHO05D005100 6.1e-145 518.5 539 56.6
Nitab4.5_0004251g0030 Nicotiana tabacum HOM05D004623 ORTHO05D005100 6.1e-145 518.5 485 66.2
CAN.G567.85 Capsicum annuum HOM05D004623 ORTHO05D005100 3.0e-144 516.2 469 68.2
CsaV3_3G000890 Cucumis sativus L. HOM05D004623 ORTHO05D005100 3.0e-144 516.2 482 66.6
Duzib205G1161 Durio zibethinus HOM05D004623 ORTHO05D005100 5.2e-144 515.4 485 59.4
Solyc08g083070.3 Solanum lycopersicum HOM05D004623 ORTHO05D005100 2.0e-143 513.5 465 68.2
Sopen08g031290 Solanum pennellii HOM05D004623 ORTHO05D005100 2.0e-143 513.5 465 68.2
Lj2A157G52 Lonicera japonica HOM05D004623 ORTHO05D005100 5.7e-143 511.9 438 71.9
Cpa.g.sc175.24 Carica papaya HOM05D004623 ORTHO05D005100 1.3e-142 510.8 438 70.1
Potri.003G146200 Populus trichocarpa HOM05D004623 ORTHO05D005100 3.7e-142 509.2 468 68.8
BcaB06g27683 Brassica carinata HOM05D004623 ORTHO05D005100 1.1e-141 507.7 498 62.4
Gohir.A09G188600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.0e-140 503.4 439 68.6
Os03g0113800 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 4.6e-140 502.3 485 65.2
THA.LOC104823625 Tarenaya hassleriana HOM05D004623 ORTHO05D005100 7.8e-140 501.5 484 63.2
Zm00001eb220090 Zea mays HOM05D004623 ORTHO05D005100 7.8e-140 501.5 469 67.0
Gohir.D09G183500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.0e-139 501.1 439 68.3
Glyma.10G172800 Glycine max HOM05D004623 ORTHO05D005100 1.3e-139 500.7 470 66.8
Lj8A201G75 Lonicera japonica HOM05D004623 ORTHO05D005100 3.0e-139 499.6 400 74.2
HanXRQChr03g0086131 Helianthus annuus HOM05D004623 ORTHO05D005100 5.0e-139 498.8 440 68.6
Sp7g00180 Schrenkiella parvula HOM05D004623 ORTHO05D005100 6.6e-139 498.4 481 62.4
AT5G41950 Arabidopsis thaliana HOM05D004623 ORTHO05D005100 1.5e-138 497.3 459 64.3
Gohir.D03G085500 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.5e-138 496.5 470 65.3
QL02p028195 Quercus lobata HOM05D004623 ORTHO05D005100 2.5e-138 496.5 383 77.3
Thhalv10027708m.g Eutrema salsugineum HOM05D004623 ORTHO05D005100 4.3e-138 495.7 459 64.7
BcaC02g08901 Brassica carinata HOM05D004623 ORTHO05D005100 5.6e-138 495.4 464 64.9
BolC4t26520H Brassica oleracea HOM05D004623 ORTHO05D005100 5.6e-138 495.4 464 64.9
Gohir.A02G098100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 2.1e-137 493.4 470 65.3
A04p15110 Brassica napus HOM05D003273 ORTHO05D005100 6.2e-137 491.9 459 64.5
BraA04t17152Z Brassica rapa HOM05D003273 ORTHO05D005100 6.2e-137 491.9 459 64.5
C04p49340 Brassica napus HOM05D003273 ORTHO05D005100 2.3e-136 490.0 459 64.7
vmacro11504 Vaccinium macrocarpon HOM05D004623 ORTHO05D005100 2.3e-136 490.0 479 59.9
CARHR212610 Cardamine hirsuta HOM05D004623 ORTHO05D005100 1.2e-135 487.6 435 66.9
Gorai.003G076800 Gossypium raimondii HOM05D004623 ORTHO05D005100 1.2e-135 487.6 487 63.0
Sabra03G0106400 Salix brachista HOM05D004623 ORTHO05D005100 1.2e-135 487.6 503 62.8
AL7G47270 Arabidopsis lyrata HOM05D004623 ORTHO05D005100 2.6e-135 486.5 435 67.1
Gorai.006G205900 Gossypium raimondii HOM05D004623 ORTHO05D005100 5.8e-135 485.3 437 66.8
Carub.0007s3343 Capsella rubella HOM05D004623 ORTHO05D005100 9.8e-135 484.6 465 63.2
DCAR_006543 Daucus carota HOM05D004623 ORTHO05D005100 1.3e-134 484.2 470 64.9
MD06G1118100 Malus domestica HOM05D004623 ORTHO05D005100 8.3e-134 481.5 356 73.3
Sc22g0004710 Simmondsia chinensis HOM05D004623 ORTHO05D005100 8.3e-134 481.5 490 62.7
SEGI_26605 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 3.0e-131 473.0 408 70.3
unitig_62.g23647 Utricularia gibba HOM05D004623 ORTHO05D005100 1.9e-130 470.3 476 63.0
EL10Ac5g12433 Beta vulgaris HOM05D004623 ORTHO05D005100 4.3e-130 469.2 474 61.6
AUR62019914 Chenopodium quinoa HOM05D004623 ORTHO05D005100 1.2e-127 461.1 478 63.2
Lalb_Chr02g0149581 Lupinus albus HOM05D004623 ORTHO05D005100 6.4e-126 455.3 460 63.5
Manes.01G051700 Manihot esculenta HOM05D004623 ORTHO05D005100 1.3e-123 447.6 469 61.8
Os10g0518300 Oryza sativa ssp. japonica HOM05D004623 ORTHO05D005100 2.3e-123 446.8 463 63.9
Zm00001eb043430 Zea mays HOM05D004623 ORTHO05D005100 8.6e-123 444.9 418 67.7
Lsat_1_v5_gn_3_14141 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-121 440.7 424 65.6
Duzib068G0531 Durio zibethinus HOM05D004623 ORTHO05D005100 2.1e-121 440.3 470 60.6
ECA246G3914 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.2e-119 434.5 433 62.8
Peaxi162Scf00074g00026 Petunia axillaris HOM05D004623 ORTHO05D005100 1.2e-116 424.5 519 51.4
Oeu041377.1 Olea europaea HOM05D004623 ORTHO05D005100 1.9e-114 417.2 453 59.8
ECA240G2146 Erigeron canadensis HOM05D004623 ORTHO05D005100 1.2e-113 414.5 420 63.1
Lsat_1_v5_gn_6_82240 Lactuca sativa HOM05D004623 ORTHO05D005100 1.6e-113 414.1 454 61.0
Mapoly0068s0096 Marchantia polymorpha HOM05D004623 ORTHO05D005100 1.2e-111 407.9 389 61.7
Manes.02G003100 Manihot esculenta HOM05D004623 ORTHO05D005100 2.1e-108 397.1 371 67.4
Actinidia22205 Actinidia chinensis HOM05D004623 ORTHO05D005100 2.7e-108 396.7 344 71.8
HanXRQChr06g0166801 Helianthus annuus HOM05D004623 ORTHO05D005100 1.0e-99 368.2 443 54.6
TWI15G1120 Tripterygium wilfordii HOM05D004623 ORTHO05D005100 3.0e-99 366.7 356 60.7
HPP92_007396 Vanilla planifolia HOM05D004623 ORTHO05D005100 2.0e-95 354.0 329 57.4
AagrBONN_evm.TU.Sc2ySwM_344.2453 Anthoceros agrestis HOM05D004623 ORTHO05D005100 1.9e-93 347.4 391 53.5
Migut.E00624 Erythranthe guttata HOM05D004623 ORTHO05D005100 1.3e-91 341.3 339 67.6
HanXRQChr17g0534721 Helianthus annuus HOM05D004623 ORTHO05D005100 4.8e-89 332.8 342 64.0
MBI12_g13717_MAGBIO Magnolia biondii HOM05D004623 ORTHO05D005100 1.8e-88 330.9 600 41.0
SMO134G0154 Selaginella moellendorffii HOM05D004623 ORTHO05D005100 2.4e-88 330.5 281 61.2
Pp3c1_15130 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.8e-83 314.3 390 52.3
CBR_g24226 Chara braunii HOM05D004623 ORTHO05D005100 3.9e-75 286.6 474 42.4
BolC6t37215H Brassica oleracea HOM05D004623 ORTHO05D005100 3.7e-73 280.0 258 61.6
Oeu013386.1 Olea europaea HOM05D004623 ORTHO05D005100 2.4e-72 277.3 283 66.8
Pp3c2_21950 Physcomitrium patens HOM05D004623 ORTHO05D005100 1.0e-67 261.9 395 39.7
Gorai.001G213600 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.7e-52 210.7 152 65.8
HanXRQChr05g0133491 Helianthus annuus HOM05D004623 ORTHO05D005100 6.7e-51 206.1 131 78.6
Gohir.A06G102600 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.2e-47 195.3 141 64.5
Gorai.003G053400 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.7e-47 194.1 141 63.8
Gohir.D05G097100 Gossypium hirsutum HOM05D004623 ORTHO05D005100 5.9e-47 193.0 141 63.8
C06p20370 Brassica napus HOM05D004623 ORTHO05D005100 6.1e-44 183.0 181 56.4
Gohir.D08G109908 Gossypium hirsutum HOM05D004623 ORTHO05D005100 8.3e-41 172.6 168 53.6
Gorai.002G111300 Gossypium raimondii HOM05D004623 ORTHO05D005100 2.4e-40 171.0 134 60.4
Gohir.D01G085875 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.1e-40 170.6 134 59.7
SEGI_12617 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 4.0e-35 153.7 95 81.1
Gohir.D07G097001 Gossypium hirsutum HOM05D004623 ORTHO05D005100 4.4e-34 150.2 128 57.8
Gohir.D03G136750 Gossypium hirsutum HOM05D004623 ORTHO05D005100 3.7e-33 147.1 171 48.0
SEGI_10381 Sequoiadendron giganteum HOM05D004623 ORTHO05D005100 1.3e-30 138.7 107 66.4
Gohir.D04G089675 Gossypium hirsutum HOM05D004623 ORTHO05D005100 1.7e-25 121.7 75 73.3
MCO14G177 Micromonas commoda HOM05D004623 ORTHO05D005100 3.5e-23 114.0 305 30.2
BcaC08g44571 Brassica carinata HOM05D004623 ORTHO05D005100 6.6e-22 109.8 78 66.7
Cre09.g387550 Chlamydomonas reinhardtii HOM05D004623 ORTHO05D005100 8.9e-19 99.4 212 33.5
TPR.G39353 Trifolium pratense HOM05D004623 ORTHO05D005100 2.6e-18 97.8 53 88.7
Glyma.02G157002 Glycine max HOM05D000518 ORTHO05D005100 1.3e-14 85.5 55 72.7
Lsat_1_v5_gn_3_125120 Lactuca sativa HOM05D004623 ORTHO05D005100 3.0e-14 84.3 110 47.3
Lsat_1_v5_gn_1_84960 Lactuca sativa HOM05D004623 ORTHO05D005100 5.0e-14 83.6 66 68.2
Actinidia15203 Actinidia chinensis HOM05D004623 ORTHO05D005100 5.6e-13 80.1 71 64.8
Lsat_1_v5_gn_7_15681 Lactuca sativa HOM05D004269 ORTHO05D007106 1.6e-12 78.6 111 45.0
Actinidia19830 Actinidia chinensis HOM05D004623 ORTHO05D005100 4.7e-12 77.0 52 75.0
MD08G1234800 Malus domestica HOM05D008315 ORTHO05D009452 4.9e-09 67.0 57 61.4
Nn3g16272 Nelumbo nucifera HOM05D004623 ORTHO05D005100 4.1e-08 63.9 84 42.9


User provided reference genes

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