Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 2.4e-173 612.1 304 100.0
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 3.3e-135 485.3 302 80.1
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 4.5e-132 474.9 302 78.1
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.2e-97 360.5 190 94.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 6.0e-84 315.1 289 55.7
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 8.1e-81 304.7 269 55.4
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 6.6e-75 285.0 280 52.1
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 1.1e-74 284.3 273 52.0
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 5.6e-74 282.0 259 50.2
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 1.6e-73 280.4 268 52.2
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.8e-72 276.9 265 53.2
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 2.4e-72 276.6 277 50.2
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 8.9e-72 274.6 265 52.1
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 2.6e-71 273.1 265 51.7
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.4e-71 272.7 262 52.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 3.4e-71 272.7 266 51.9
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.9e-71 271.2 274 48.9
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-70 270.0 274 48.2
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.2e-70 270.0 274 48.2
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 3.8e-70 269.2 283 48.8
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 4.9e-70 268.9 267 51.7
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 1.9e-69 266.9 267 49.1
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.9e-69 266.9 267 49.1
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 9.3e-69 264.6 267 48.7
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 9.3e-69 264.6 299 45.8
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 1.6e-68 263.8 273 50.9
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 1.6e-68 263.8 263 49.4
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 1.6e-68 263.8 253 53.4
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 2.7e-68 263.1 305 47.5
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 2.3e-67 260.0 293 48.8
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 3.9e-67 259.2 295 46.1
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 6.6e-67 258.5 272 47.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 4.8e-65 252.3 275 45.5
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 4.8e-65 252.3 253 50.2
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 4.8e-65 252.3 297 46.8
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 6.2e-65 251.9 273 50.2
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 8.1e-65 251.5 268 48.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 3.1e-64 249.6 292 44.2
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 9.0e-64 248.1 290 45.2
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.5e-63 247.3 327 43.7
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 2.6e-63 246.5 270 49.3
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 2.6e-63 246.5 270 49.3
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 2.6e-63 246.5 270 49.3
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 1.3e-62 244.2 307 45.3
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 1.3e-62 244.2 266 48.5
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 3.8e-62 242.7 224 55.4
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.1e-61 241.1 284 44.7
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 1.9e-61 240.4 285 46.0
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 3.2e-61 239.6 226 51.8
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.6e-60 237.3 265 47.5
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 2.7e-60 236.5 260 49.6
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 3.5e-60 236.1 277 44.8
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 7.9e-60 235.0 258 46.9
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.7e-59 233.8 252 48.4
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.0e-59 233.0 264 47.3
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 3.0e-59 233.0 266 46.6
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 3.9e-59 232.6 301 42.9
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 6.6e-59 231.9 251 45.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 6.6e-59 231.9 278 45.7
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 6.6e-59 231.9 297 43.1
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.1e-58 231.1 267 47.6
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.5e-58 230.7 252 48.4
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 1.9e-58 230.3 294 42.9
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.9e-58 230.3 250 48.8
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 2.5e-58 229.9 250 48.4
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 2.5e-58 229.9 266 45.1
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 3.3e-58 229.6 261 44.8
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.3e-57 227.6 289 43.9
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-57 226.9 206 51.9
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 8.1e-57 224.9 265 44.5
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 3.1e-56 223.0 273 44.0
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 1.2e-55 221.1 262 47.7
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 2.6e-55 219.9 278 45.0
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 3.4e-55 219.5 254 46.9
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 3.4e-55 219.5 236 46.2
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 9.9e-55 218.0 234 48.3
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.3e-54 217.6 281 43.1
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.3e-54 217.6 288 41.0
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.8e-54 216.1 259 43.6
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 4.9e-54 215.7 285 43.5
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 1.1e-53 214.5 285 43.9
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 1.4e-53 214.2 285 43.9
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 1.9e-53 213.8 265 44.5
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-53 213.4 248 46.4
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-53 212.6 244 46.3
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-53 212.2 244 46.3
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.4e-53 212.2 244 46.3
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.3e-53 211.5 244 45.9
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.3e-53 211.5 244 45.9
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.3e-53 211.5 244 45.9
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.3e-53 211.5 243 46.9
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.1e-52 210.3 244 45.9
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.7e-52 209.9 180 57.8
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 3.5e-52 209.5 261 43.3
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.5e-52 209.5 244 45.9
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 1.0e-51 208.0 284 41.2
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.3e-51 207.6 281 41.6
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.7e-51 204.9 244 45.1
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.6e-49 200.7 232 46.1
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 1.4e-48 197.6 275 41.1
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 7.6e-47 191.8 280 39.3
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 1.3e-46 191.0 308 41.9
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 1.3e-46 191.0 266 41.7
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.7e-46 190.7 155 60.6
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 2.2e-46 190.3 269 39.8
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 1.9e-45 187.2 265 43.4
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 4.2e-45 186.0 300 41.3
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.6e-44 184.1 246 44.3
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 2.1e-44 183.7 267 41.6
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 4.6e-44 182.6 287 41.1
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 6.0e-44 182.2 278 41.7
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 6.0e-44 182.2 246 43.1
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 1.0e-43 181.4 262 41.6
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 1.3e-43 181.0 246 43.1
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 5.1e-43 179.1 293 38.9
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 1.1e-42 177.9 294 38.8
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.1e-42 177.9 293 38.6
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 1.9e-42 177.2 193 45.6
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 5.7e-42 175.6 256 41.0
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 7.4e-42 175.3 250 42.0
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 6.2e-41 172.2 255 40.4
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 6.2e-41 172.2 255 40.4
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.8e-40 170.6 253 37.9
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.4e-40 170.2 185 47.6
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 4.1e-40 169.5 255 39.6
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 5.3e-40 169.1 163 51.5
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.0e-40 168.3 163 50.9
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 9.0e-40 168.3 257 41.2
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.4e-39 166.4 167 50.3
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 1.6e-36 157.5 243 39.1
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.8e-35 154.1 127 59.8
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 5.1e-35 152.5 209 42.1
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.7e-33 146.4 275 35.3
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 4.1e-32 142.9 161 47.8
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 5.0e-30 136.0 189 41.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.1e-28 129.0 146 46.6
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 9.7e-26 121.7 198 32.8
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-24 118.2 136 45.6
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 1.2e-20 104.8 207 32.9
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 6.3e-17 92.4 207 31.4
MELO3C011047.2 Cucumis melo HOM05D005023 ORTHO05D006009 2.6e-15 87.0 103 43.7
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 3.6e-12 76.6 151 33.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 1.3e-09 68.2 92 42.4
SEGI_33873 Sequoiadendron giganteum HOM05D005023 ORTHO05D006009 2.0e-07 60.8 77 42.9


User provided reference genes

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