Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3769 Papaver somniferum HOM05D004886 ORTHO05D005868 1.3e-91 339.7 173 100.0
PSO063G1771 Papaver somniferum HOM05D004886 ORTHO05D005868 3.5e-89 331.6 173 97.7
vmacro13553 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 1.1e-69 266.9 173 75.7
Actinidia05803 Actinidia chinensis HOM05D004886 ORTHO05D005868 2.4e-69 265.8 173 76.3
VMungo0331G0020 Vigna mungo HOM05D004886 ORTHO05D005868 3.1e-69 265.4 173 74.0
Rhsim07G0040800 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.9e-69 264.2 173 74.6
Rhsim07G0041300 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.9e-69 264.2 173 74.6
RhsimUnG0113600 Rhododendron simsii HOM05D004886 ORTHO05D005868 6.9e-69 264.2 173 74.6
Phvul.010G040200 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 2.0e-68 262.7 173 73.4
Glyma.03G100700 Glycine max HOM05D004886 ORTHO05D005868 2.6e-68 262.3 176 73.9
Psat4g216480 Pisum sativum HOM05D004886 ORTHO05D005868 2.6e-68 262.3 175 73.7
HanXRQChr05g0162431 Helianthus annuus HOM05D004886 ORTHO05D005868 3.4e-68 261.9 173 75.7
TPR.G17348 Trifolium pratense HOM05D004886 ORTHO05D005868 4.5e-68 261.5 181 71.3
Ciclev10022551m.g Citrus clementina HOM05D004886 ORTHO05D005868 9.9e-68 260.4 173 76.3
Lsat_1_v5_gn_6_101400 Lactuca sativa HOM05D004886 ORTHO05D005868 1.3e-67 260.0 173 74.6
Lalb_Chr07g0194931 Lupinus albus HOM05D004886 ORTHO05D005868 1.7e-67 259.6 175 71.4
MELO3C022467.2 Cucumis melo HOM05D004886 ORTHO05D005868 4.9e-67 258.1 173 72.8
ECA246G0884 Erigeron canadensis HOM05D004886 ORTHO05D005868 4.9e-67 258.1 173 73.4
GSVIVG01018384001 Vitis vinifera HOM05D004886 ORTHO05D005868 1.4e-66 256.5 171 73.7
Atru.chr5.18 Acer truncatum HOM05D004886 ORTHO05D005868 1.9e-66 256.1 173 72.8
Aqoxy3G02476 Aquilegia oxysepala HOM05D004886 ORTHO05D005868 2.4e-66 255.8 173 70.5
CSS0044670 Camellia sinensis var. sinensis HOM05D004886 ORTHO05D005868 3.2e-66 255.4 178 72.5
Gorai.012G082000 Gossypium raimondii HOM05D004886 ORTHO05D005868 3.2e-66 255.4 174 73.6
Nn1g07674 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.2e-66 255.4 172 75.0
Gohir.A05G333500 Gossypium hirsutum HOM05D004886 ORTHO05D005868 9.3e-66 253.8 174 73.0
Manes.05G060800 Manihot esculenta HOM05D004886 ORTHO05D005868 9.3e-66 253.8 173 74.0
Gohir.D04G073000 Gossypium hirsutum HOM05D004886 ORTHO05D005868 2.1e-65 252.7 174 73.0
Medtr8g009670 Medicago truncatula HOM05D004886 ORTHO05D005868 2.1e-65 252.7 178 70.2
TWI59G0909 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 2.1e-65 252.7 174 73.0
Sed0007303 Sechium edule HOM05D004886 ORTHO05D005868 2.7e-65 252.3 173 70.5
MBI04_g13864_MAGBIO Magnolia biondii HOM05D004886 ORTHO05D005868 3.5e-65 251.9 170 75.3
Lj3g0025670 Lotus japonicus HOM05D004886 ORTHO05D005868 4.6e-65 251.5 163 73.6
Hma1.2p1_0021F.1_g014430 Hydrangea macrophylla HOM05D004886 ORTHO05D005868 1.0e-64 250.4 171 70.2
CiPaw.14G014400 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.3e-64 250.0 173 69.9
FAN23G1419 Fragaria x ananassa HOM05D004886 ORTHO05D005868 1.8e-64 249.6 159 75.5
FAN28G1372 Fragaria x ananassa HOM05D004886 ORTHO05D005868 5.1e-64 248.1 159 74.8
RcHm_v2.0_Chr3g0487321 Rosa chinensis HOM05D004886 ORTHO05D005868 5.1e-64 248.1 159 74.8
Duzib128G0726 Durio zibethinus HOM05D004886 ORTHO05D005868 6.7e-64 247.7 174 71.8
FAN26G2919 Fragaria x ananassa HOM05D004886 ORTHO05D005868 8.7e-64 247.3 159 74.8
Cc02_g25880 Coffea canephora HOM05D004886 ORTHO05D005868 1.5e-63 246.5 173 71.1
FvH4_1g27010 Fragaria vesca HOM05D004886 ORTHO05D005868 1.5e-63 246.5 159 73.6
Nitab4.5_0001476g0110 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.5e-63 246.5 175 69.7
CiPaw.13G020500 Carya illinoinensis HOM05D004886 ORTHO05D005868 1.9e-63 246.1 174 71.8
COL.COLO4_20817 Corchorus olitorius HOM05D004886 ORTHO05D005868 1.9e-63 246.1 175 70.3
Nitab4.5_0004264g0010 Nicotiana tabacum HOM05D004886 ORTHO05D005868 1.9e-63 246.1 175 69.7
MD07G1082600 Malus domestica HOM05D004886 ORTHO05D005868 3.3e-63 245.4 173 67.6
CANSAT21G0345 Cannabis sativa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 181 67.4
Potri.014G179500 Populus trichocarpa HOM05D004886 ORTHO05D005868 4.3e-63 245.0 171 73.7
Prupe.2G110500 Prunus persica HOM05D004886 ORTHO05D005868 7.4e-63 244.2 163 70.6
TAR375G0952 Trochodendron aralioides HOM05D004886 ORTHO05D005868 7.4e-63 244.2 159 75.5
CsaV3_6G004620 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.6e-63 243.8 202 61.9
QL04p024857 Quercus lobata HOM05D004886 ORTHO05D005868 1.3e-62 243.4 174 67.2
Prupe.3G009000 Prunus persica HOM05D004886 ORTHO05D005868 1.6e-62 243.0 171 69.6
CsaV3_6G021750 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-62 242.3 202 61.4
CsaV3_6G037000 Cucumis sativus L. HOM05D004886 ORTHO05D005868 2.8e-62 242.3 202 61.4
Oeu002885.1 Olea europaea HOM05D004886 ORTHO05D005868 3.7e-62 241.9 173 68.2
Cfa011001 Carpinus fangiana HOM05D002067 ORTHO05D001060 4.8e-62 241.5 161 71.4
Migut.N01703 Erythranthe guttata HOM05D004886 ORTHO05D005868 4.8e-62 241.5 173 67.1
Thecc.10G000600 Theobroma cacao HOM05D004886 ORTHO05D005868 4.8e-62 241.5 197 65.5
MD09G1285000 Malus domestica HOM05D004886 ORTHO05D005868 6.2e-62 241.1 183 65.6
arahy.Tifrunner.gnm1.ann1.FT2T1Y Arachis hypogaea HOM05D004886 ORTHO05D005868 8.1e-62 240.7 175 70.9
MSTRG.28124 Avicennia marina HOM05D004886 ORTHO05D005868 8.1e-62 240.7 173 66.5
CAN.G74.36 Capsicum annuum HOM05D004886 ORTHO05D005868 1.1e-61 240.4 172 68.0
TWI14G0309 Tripterygium wilfordii HOM05D004886 ORTHO05D005868 1.1e-61 240.4 173 67.1
DCAR_015764 Daucus carota HOM05D004886 ORTHO05D005868 1.4e-61 240.0 210 62.9
Sopen01g035180 Solanum pennellii HOM05D004886 ORTHO05D005868 1.8e-61 239.6 173 67.6
Solyc01g088350.4 Solanum lycopersicum HOM05D004886 ORTHO05D005868 4.0e-61 238.4 173 67.6
PGR044G2350 Punica granatum HOM05D004886 ORTHO05D005868 1.2e-60 236.9 163 70.6
Hund26556 Selenicereus undatus HOM05D004886 ORTHO05D005868 1.5e-60 236.5 173 67.1
Eucgr.D01136 Eucalyptus grandis HOM05D004886 ORTHO05D005868 2.0e-60 236.1 174 67.8
arahy.Tifrunner.gnm1.ann1.U68WY7 Arachis hypogaea HOM05D004886 ORTHO05D005868 2.6e-60 235.7 175 70.3
FAN19G1058 Fragaria x ananassa HOM05D004886 ORTHO05D005868 2.6e-60 235.7 159 72.3
Peaxi162Scf01124g00012 Petunia axillaris HOM05D004886 ORTHO05D005868 4.5e-60 235.0 170 70.0
unitig_85.g27219 Utricularia gibba HOM05D004886 ORTHO05D005868 7.6e-60 234.2 174 64.9
BcaC02g12300 Brassica carinata HOM05D004886 ORTHO05D005868 1.7e-59 233.0 173 64.2
C04p05420 Brassica napus HOM05D004886 ORTHO05D005868 1.7e-59 233.0 173 64.2
A05p04680 Brassica napus HOM05D004886 ORTHO05D005868 3.8e-59 231.9 173 64.2
BolC4t22182H Brassica oleracea HOM05D004886 ORTHO05D005868 3.8e-59 231.9 173 63.6
BraA05t19444Z Brassica rapa HOM05D004886 ORTHO05D005868 3.8e-59 231.9 173 65.3
Thhalv10006276m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 3.8e-59 231.9 173 63.6
AT3G60150 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 4.9e-59 231.5 173 63.6
BcaB02g08829 Brassica carinata HOM05D004886 ORTHO05D005868 4.9e-59 231.5 173 64.2
THA.LOC104817165 Tarenaya hassleriana HOM05D004886 ORTHO05D005868 4.9e-59 231.5 173 65.9
AL4G43550 Arabidopsis lyrata HOM05D004886 ORTHO05D005868 6.5e-59 231.1 173 64.7
HPP92_003510 Vanilla planifolia HOM05D004886 ORTHO05D005868 1.1e-58 230.3 170 67.1
AT2G44525 Arabidopsis thaliana HOM05D004886 ORTHO05D005868 1.4e-58 229.9 173 64.2
EL10Ac8g19580 Beta vulgaris HOM05D004886 ORTHO05D005868 1.4e-58 229.9 173 64.2
Sp5g03060 Schrenkiella parvula HOM05D004886 ORTHO05D005868 1.4e-58 229.9 173 63.6
Thhalv10001659m.g Eutrema salsugineum HOM05D004886 ORTHO05D005868 2.5e-58 229.2 173 62.4
A04p01810 Brassica napus HOM05D004886 ORTHO05D005868 9.3e-58 227.3 173 63.0
BraA04t15905Z Brassica rapa HOM05D004886 ORTHO05D005868 9.3e-58 227.3 173 63.0
Carub.0004s2709 Capsella rubella HOM05D004886 ORTHO05D005868 9.3e-58 227.3 173 63.0
CARHR139740 Cardamine hirsuta HOM05D004886 ORTHO05D005868 1.2e-57 226.9 173 63.0
Aa31LG1G26120 Aethionema arabicum HOM05D004886 ORTHO05D005868 1.6e-57 226.5 173 63.6
SalBow4G2359 Salvia bowleyana HOM05D004886 ORTHO05D005868 1.6e-57 226.5 169 65.7
vmacro21096 Vaccinium macrocarpon HOM05D004886 ORTHO05D005868 2.1e-57 226.1 220 57.3
Sp4g26620 Schrenkiella parvula HOM05D004886 ORTHO05D005868 2.7e-57 225.7 173 62.4
AUR62034033 Chenopodium quinoa HOM05D004886 ORTHO05D005868 3.5e-57 225.3 174 63.2
BcaB02g08189 Brassica carinata HOM05D004886 ORTHO05D005868 6.0e-57 224.6 171 64.3
Haze_02935 Corylus avellana HOM05D004886 ORTHO05D005868 1.1e-55 220.3 177 65.5
BcaC02g10116 Brassica carinata HOM05D004886 ORTHO05D005868 1.9e-55 219.5 165 63.6
BolC4t24818H Brassica oleracea HOM05D004886 ORTHO05D005868 1.9e-55 219.5 165 63.6
Carub.0005s2688 Capsella rubella HOM05D004886 ORTHO05D005868 2.5e-55 219.2 174 62.1
C04p32550 Brassica napus HOM05D004886 ORTHO05D005868 4.3e-55 218.4 165 63.6
Zm00001eb024270 Zea mays HOM05D004886 ORTHO05D005868 5.7e-55 218.0 166 63.3
CsaV3_UNG176370 Cucumis sativus L. HOM05D004886 ORTHO05D005868 3.7e-54 215.3 211 55.9
CDE11G0764 Ceratophyllum demersum HOM05D004886 ORTHO05D005868 6.2e-54 214.5 173 62.4
Zm00001eb390620 Zea mays HOM05D004886 ORTHO05D005868 6.2e-54 214.5 173 61.3
Sed0018381 Sechium edule HOM05D004886 ORTHO05D005868 1.1e-53 213.8 190 61.1
CsaV3_6G006530 Cucumis sativus L. HOM05D004886 ORTHO05D005868 9.0e-53 210.7 139 71.2
SGA_v2.0_scaffold77G25231 Striga asiatica HOM05D000012 ORTHO05D001060 3.4e-52 208.8 227 50.7
Dinv44001 Davidia involucrata HOM05D004886 ORTHO05D005868 1.1e-50 203.8 144 69.4
Actinidia30969 Actinidia chinensis HOM05D004886 ORTHO05D005868 7.1e-50 201.1 120 78.3
Sabra14G0137800 Salix brachista HOM05D004886 ORTHO05D005868 4.6e-49 198.4 264 45.8
Lj9C547T8 Lonicera japonica HOM05D004886 ORTHO05D005868 6.7e-48 194.5 184 58.7
Ah.09g232340 Amaranthus hybridus HOM05D004886 ORTHO05D005868 4.8e-46 188.3 167 58.7
CAN.G1480.6 Capsicum annuum HOM05D004886 ORTHO05D005868 1.4e-42 176.8 113 72.6
HPP92_003514 Vanilla planifolia HOM05D004886 ORTHO05D005868 5.5e-42 174.9 170 55.3
ClCG06G000740 Citrullus lanatus HOM05D004886 ORTHO05D005868 9.4e-42 174.1 173 57.2
SHI13674 Sapria himalayana HOM05D004886 ORTHO05D005868 1.5e-39 166.8 113 69.0
Nn1g07677 Nelumbo nucifera HOM05D004886 ORTHO05D005868 3.4e-36 155.6 109 71.6
Pp3c12_4990 Physcomitrium patens HOM05D004886 ORTHO05D005868 2.9e-35 152.5 139 51.8
Mapoly0033s0133 Marchantia polymorpha HOM05D004886 ORTHO05D005868 2.7e-33 146.0 160 43.8
SGA_v2.0_scaffold95G28731 Striga asiatica HOM05D004886 ORTHO05D005868 1.8e-32 143.3 116 60.3
Cpa.g.sc587.3 Carica papaya HOM05D004886 ORTHO05D005868 3.9e-32 142.1 109 62.4
Dinv43568 Davidia involucrata HOM05D004886 ORTHO05D005868 5.1e-32 141.7 98 70.4
Sc23g0004110 Simmondsia chinensis HOM05D004886 ORTHO05D005868 1.1e-31 140.6 119 61.3
Sabra14G0139700 Salix brachista HOM05D004886 ORTHO05D005868 9.7e-31 137.5 105 61.9
Aa31LG10G14300 Aethionema arabicum HOM05D004886 ORTHO05D005868 3.5e-28 129.0 118 55.9
Os10g0571100 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.9e-26 123.2 105 52.4
MD04G1140000 Malus domestica HOM05D004886 ORTHO05D005868 6.1e-25 118.2 103 56.3
AUR62038597 Chenopodium quinoa HOM05D004886 ORTHO05D005868 4.0e-24 115.5 100 57.0
BraA05t19447Z Brassica rapa HOM05D004886 ORTHO05D005868 3.3e-23 112.5 79 65.8
BraA05t19448Z Brassica rapa HOM05D004886 ORTHO05D005868 3.3e-23 112.5 79 65.8
AagrBONN_evm.TU.Sc2ySwM_344.1568 Anthoceros agrestis HOM05D004886 ORTHO05D005868 9.7e-23 110.9 116 42.2
Sabra14G0139800 Salix brachista HOM05D004886 ORTHO05D005868 4.8e-22 108.6 63 85.7
Cre12.g496800 Chlamydomonas reinhardtii HOM05D004886 ORTHO05D005868 8.2e-22 107.8 110 42.7
CsaV3_5G024660 Cucumis sativus L. HOM05D004886 ORTHO05D005868 4.1e-21 105.5 113 47.8
SEGI_24442 Sequoiadendron giganteum HOM05D004886 ORTHO05D005868 1.6e-20 103.6 94 55.3
Os03g0590700 Oryza sativa ssp. japonica HOM05D004886 ORTHO05D005868 1.7e-19 100.1 64 76.6
SMO364G0857 Selaginella moellendorffii HOM05D004886 ORTHO05D005868 2.9e-19 99.4 104 43.3
Cpa.g.c35192.2 Carica papaya HOM05D004886 ORTHO05D005868 5.0e-19 98.6 61 77.0
CsaV3_3G022410 Cucumis sativus L. HOM05D004886 ORTHO05D005868 1.1e-18 97.4 110 44.5
CARHR170460 Cardamine hirsuta HOM05D004886 ORTHO05D005868 3.2e-18 95.9 74 63.5
ATR0049G020 Amborella trichopoda HOM05D004886 ORTHO05D005868 7.2e-18 94.7 65 75.4
A05p04700 Brassica napus HOM05D004886 ORTHO05D005868 1.2e-17 94.0 65 67.7
MCO06G183 Micromonas commoda HOM05D004886 ORTHO05D005868 2.2e-14 83.2 106 37.7
PRCOL_00001209 Prasinoderma coloniale HOM05D004886 ORTHO05D005868 4.8e-14 82.0 136 36.0
Cc04_g01570 Coffea canephora HOM05D004886 ORTHO05D005868 4.5e-12 75.5 50 74.0
FAN10G0867 Fragaria x ananassa HOM05D004886 ORTHO05D005868 7.7e-12 74.7 104 45.2
Phvul.001G073900 Phaseolus vulgaris HOM05D004886 ORTHO05D005868 1.3e-06 57.4 36 72.2
SalBow2G0716 Salvia bowleyana HOM05D000282 ORTHO05D000272 1.3e-06 57.4 32 84.4


User provided reference genes

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