Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3725 Papaver somniferum HOM05D004893 ORTHO05D006320 0.0e+00 1615.5 806 100.0
PSO063G4841 Papaver somniferum HOM05D004893 ORTHO05D006320 0.0e+00 1578.9 806 97.6
TAR627G1078 Trochodendron aralioides HOM05D004893 ORTHO05D006320 1.1e-307 1059.7 810 66.8
Aqoxy3G03036 Aquilegia oxysepala HOM05D004893 ORTHO05D006320 2.6e-304 1048.5 814 65.2
QL02p098221 Quercus lobata HOM05D004893 ORTHO05D006320 8.7e-292 1006.9 813 63.0
Cfa010313 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.3e-291 1004.6 819 63.4
Cfa013310 Carpinus fangiana HOM05D004893 ORTHO05D006320 4.3e-291 1004.6 816 63.0
Prupe.1G084200 Prunus persica HOM05D004893 ORTHO05D006320 5.0e-287 991.1 818 62.0
RcHm_v2.0_Chr4g0401591 Rosa chinensis HOM05D004893 ORTHO05D006320 8.5e-287 990.3 815 61.6
Nn7g38118 Nelumbo nucifera HOM05D004893 ORTHO05D006320 2.5e-286 988.8 813 62.4
GSVIVG01030738001 Vitis vinifera HOM05D004893 ORTHO05D006320 4.6e-285 984.6 814 61.3
CSS0040034 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 2.2e-282 975.7 818 62.0
Manes.06G023100 Manihot esculenta HOM05D004893 ORTHO05D006320 1.8e-281 972.6 816 60.7
CSS0008978 Camellia sinensis var. sinensis HOM05D004893 ORTHO05D006320 4.1e-281 971.5 818 61.9
Thecc.09G175700 Theobroma cacao HOM05D004893 ORTHO05D006320 2.9e-279 965.3 816 60.7
FAN12G2097 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.4e-278 963.0 806 60.4
FvH4_4g07920 Fragaria vesca HOM05D004893 ORTHO05D006320 1.9e-278 962.6 812 60.2
Gohir.D05G004900 Gossypium hirsutum HOM05D004893 ORTHO05D006320 1.6e-277 959.5 816 60.0
FAN22G1078 Fragaria x ananassa HOM05D004893 ORTHO05D006320 6.1e-277 957.6 811 59.9
Gohir.A05G004264 Gossypium hirsutum HOM05D004893 ORTHO05D006320 6.1e-277 957.6 816 59.8
Gorai.009G004800 Gossypium raimondii HOM05D004893 ORTHO05D006320 1.8e-276 956.1 816 59.9
Hma1.2p1_0321F.1_g124570 Hydrangea macrophylla HOM05D004893 ORTHO05D006320 3.0e-276 955.3 815 59.5
vmacro21776 Vaccinium macrocarpon HOM05D004893 ORTHO05D006320 1.1e-275 953.4 815 60.1
Duzib150G0781 Durio zibethinus HOM05D004893 ORTHO05D006320 1.5e-275 953.0 812 60.0
Potri.006G166500 Populus trichocarpa HOM05D004893 ORTHO05D006320 7.4e-275 950.7 808 60.0
FAN07G0898 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.7e-274 949.5 815 59.4
MD13G1251600 Malus domestica HOM05D004893 ORTHO05D006320 2.8e-274 948.7 816 59.7
Potri.018G091100 Populus trichocarpa HOM05D004893 ORTHO05D006320 4.1e-273 944.9 814 60.3
Atru.chr7.881 Acer truncatum HOM05D004893 ORTHO05D006320 1.2e-272 943.3 821 59.0
ClCG06G013450 Citrullus lanatus HOM05D004893 ORTHO05D006320 1.0e-271 940.3 814 61.3
CANSAT11G1129 Cannabis sativa HOM05D004893 ORTHO05D006320 1.3e-271 939.9 810 58.3
EL10Ac6g14738 Beta vulgaris HOM05D004893 ORTHO05D006320 1.7e-271 939.5 810 59.9
Sed0012855 Sechium edule HOM05D004893 ORTHO05D006320 1.1e-270 936.8 810 60.6
Rhsim13G0225800 Rhododendron simsii HOM05D004893 ORTHO05D006320 3.2e-270 935.3 852 56.8
Ciclev10007405m.g Citrus clementina HOM05D004893 ORTHO05D006320 4.2e-270 934.9 822 58.5
CsaV3_1G031710 Cucumis sativus L. HOM05D004893 ORTHO05D006320 4.2e-270 934.9 811 60.2
Eucgr.C02353 Eucalyptus grandis HOM05D004893 ORTHO05D006320 2.1e-269 932.6 814 59.3
Haze_03433 Corylus avellana HOM05D004893 ORTHO05D006320 3.6e-269 931.8 821 59.8
Sed0012025 Sechium edule HOM05D004893 ORTHO05D006320 4.7e-269 931.4 816 59.4
TWI34G0813 Tripterygium wilfordii HOM05D004893 ORTHO05D006320 1.4e-268 929.9 816 58.5
Sabra06G0128100 Salix brachista HOM05D004893 ORTHO05D006320 2.6e-267 925.6 876 55.4
DCAR_013745 Daucus carota HOM05D004893 ORTHO05D006320 5.7e-267 924.5 815 58.4
FAN17G0276 Fragaria x ananassa HOM05D004893 ORTHO05D006320 1.3e-266 923.3 875 55.0
HanXRQChr09g0273501 Helianthus annuus HOM05D004893 ORTHO05D006320 3.7e-266 921.8 807 58.2
Peaxi162Scf00452g00844 Petunia axillaris HOM05D004893 ORTHO05D006320 4.5e-264 914.8 814 57.9
SalBow8G3700 Salvia bowleyana HOM05D004893 ORTHO05D006320 1.0e-263 913.7 811 57.7
Lj4g0004814 Lotus japonicus HOM05D004893 ORTHO05D006320 1.6e-261 906.4 811 58.0
PGR044G2140 Punica granatum HOM05D004893 ORTHO05D006320 1.6e-261 906.4 814 58.1
arahy.Tifrunner.gnm1.ann1.B5GTII Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-260 902.9 809 58.8
ECA240G4652 Erigeron canadensis HOM05D004893 ORTHO05D006320 2.3e-260 902.5 808 56.6
Solyc07g066410.4 Solanum lycopersicum HOM05D004893 ORTHO05D006320 3.0e-260 902.1 810 58.8
MELO3C017452.2 Cucumis melo HOM05D004893 ORTHO05D006320 6.8e-260 901.0 811 59.7
Sopen07g034580 Solanum pennellii HOM05D004893 ORTHO05D006320 1.5e-259 899.8 817 58.3
Ah.09g231700 Amaranthus hybridus HOM05D004893 ORTHO05D006320 2.6e-259 899.0 811 58.0
Lalb_Chr07g0180551 Lupinus albus HOM05D004893 ORTHO05D006320 3.1e-257 892.1 812 57.8
Nitab4.5_0008437g0020 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.1e-257 891.7 825 57.8
Atru.chr13.1778 Acer truncatum HOM05D004893 ORTHO05D006320 1.2e-256 890.2 785 58.3
AT2G18900 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 1.7e-255 886.3 823 56.6
AL3G53020 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 2.9e-255 885.6 823 57.1
Thhalv10022562m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 2.9e-255 885.6 819 57.5
Carub.0003s3314 Capsella rubella HOM05D004893 ORTHO05D006320 8.5e-255 884.0 821 56.3
Lj8C187G7 Lonicera japonica HOM05D004893 ORTHO05D006320 1.9e-254 882.9 835 57.5
Cc05_g16000 Coffea canephora HOM05D004893 ORTHO05D006320 9.4e-254 880.6 816 56.7
Sp3g32370 Schrenkiella parvula HOM05D004893 ORTHO05D006320 2.1e-253 879.4 819 57.0
A07p01760 Brassica napus HOM05D004893 ORTHO05D006320 2.3e-252 875.9 818 56.6
BraA07t27976Z Brassica rapa HOM05D004893 ORTHO05D006320 3.0e-252 875.5 826 56.2
VMungo1215G1808 Vigna mungo HOM05D004893 ORTHO05D006320 4.0e-252 875.2 814 56.9
CDE08G1653 Ceratophyllum demersum HOM05D004893 ORTHO05D006320 6.8e-252 874.4 808 56.9
HPP92_012201 Vanilla planifolia HOM05D004893 ORTHO05D006320 8.8e-252 874.0 806 55.8
MSTRG.16114 Avicennia marina HOM05D004893 ORTHO05D006320 1.5e-251 873.2 815 56.3
Ca_21236_v3 Cicer arietinum L. HOM05D004893 ORTHO05D006320 1.5e-251 873.2 812 56.4
arahy.Tifrunner.gnm1.ann1.48BVGN Arachis hypogaea HOM05D004893 ORTHO05D006320 3.4e-251 872.1 813 57.3
ATR1098G135 Amborella trichopoda HOM05D004893 ORTHO05D006320 1.3e-250 870.2 816 55.5
C07p03690 Brassica napus HOM05D004893 ORTHO05D006320 2.8e-250 869.0 819 56.4
CARHR109460 Cardamine hirsuta HOM05D004893 ORTHO05D006320 3.7e-250 868.6 826 55.9
BcaC06g36488 Brassica carinata HOM05D004893 ORTHO05D006320 1.1e-249 867.1 819 56.3
BolC7t40765H Brassica oleracea HOM05D004893 ORTHO05D006320 1.1e-249 867.1 819 56.3
THA.LOC104803489 Tarenaya hassleriana HOM05D004893 ORTHO05D006320 1.8e-249 866.3 821 56.0
Psat4g012800 Pisum sativum HOM05D004893 ORTHO05D006320 2.4e-249 865.9 810 55.1
TPR.G5437 Trifolium pratense HOM05D004893 ORTHO05D006320 2.0e-248 862.8 811 55.5
Phvul.003G144100 Phaseolus vulgaris HOM05D004893 ORTHO05D006320 1.7e-247 859.8 813 56.1
Lsat_1_v5_gn_7_72221 Lactuca sativa HOM05D004893 ORTHO05D006320 2.9e-247 859.0 823 55.0
Aa31LG8G15990 Aethionema arabicum HOM05D004893 ORTHO05D006320 7.5e-243 844.3 824 55.0
Zm00001eb031520 Zea mays HOM05D004893 ORTHO05D006320 9.8e-243 844.0 810 53.5
Os12g0609800 Oryza sativa ssp. japonica HOM05D004893 ORTHO05D006320 1.3e-242 843.6 810 54.1
COL.COLO4_37741 Corchorus olitorius HOM05D004893 ORTHO05D006320 1.8e-241 839.7 839 53.8
Glyma.13G097400 Glycine max HOM05D004893 ORTHO05D006320 7.8e-240 834.3 817 55.8
Glyma.17G062200 Glycine max HOM05D004893 ORTHO05D006320 5.0e-239 831.6 816 55.1
Medtr4g127820 Medicago truncatula HOM05D004893 ORTHO05D006320 3.3e-238 828.9 810 54.0
AUR62042215 Chenopodium quinoa HOM05D004893 ORTHO05D006320 5.8e-235 818.1 813 52.9
Nitab4.5_0001749g0080 Nicotiana tabacum HOM05D004893 ORTHO05D006320 4.6e-232 808.5 830 54.8
BcaB03g16682 Brassica carinata HOM05D004893 ORTHO05D006320 6.8e-228 794.7 817 52.9
AUR62033061 Chenopodium quinoa HOM05D004893 ORTHO05D006320 4.4e-227 792.0 810 51.7
Migut.M01562 Erythranthe guttata HOM05D004893 ORTHO05D006320 3.0e-223 779.2 814 51.8
Hund06466 Selenicereus undatus HOM05D004893 ORTHO05D006320 3.6e-221 772.3 744 55.4
CiPaw.08G035400 Carya illinoinensis HOM05D004893 ORTHO05D006320 4.4e-211 738.8 583 65.0
Sc12g0007760 Simmondsia chinensis HOM05D004893 ORTHO05D006320 3.8e-210 735.7 626 59.6
SGA_v2.0_scaffold186G40224 Striga asiatica HOM05D004893 ORTHO05D006320 3.2e-193 679.5 890 46.0
Actinidia07346 Actinidia chinensis HOM05D004893 ORTHO05D006320 4.2e-193 679.1 560 61.4
unitig_748.g7834 Utricularia gibba HOM05D004893 ORTHO05D006320 6.0e-192 675.2 814 46.3
SEGI_38878 Sequoiadendron giganteum HOM05D004893 ORTHO05D006320 5.1e-183 645.6 820 43.9
AT3G26480 Arabidopsis thaliana HOM05D004893 ORTHO05D006320 5.7e-174 615.5 815 43.8
AL7G19230 Arabidopsis lyrata HOM05D004893 ORTHO05D006320 5.3e-172 609.0 817 43.7
Thhalv10024453m.g Eutrema salsugineum HOM05D004893 ORTHO05D006320 6.5e-170 602.1 847 42.6
C01p06460 Brassica napus HOM05D004893 ORTHO05D006320 3.3e-158 563.1 818 42.2
Dinv42517 Davidia involucrata HOM05D004893 ORTHO05D006320 6.5e-154 548.9 460 62.4
Mapoly0156s0021 Marchantia polymorpha HOM05D004893 ORTHO05D006320 6.3e-149 532.3 845 36.4
MBI02_g12652_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 1.3e-141 508.1 480 56.2
MD16G1255900 Malus domestica HOM05D004893 ORTHO05D006320 1.3e-141 508.1 587 49.9
BolC1t00640H Brassica oleracea HOM05D004893 ORTHO05D006320 6.3e-141 505.8 806 39.3
AagrBONN_evm.TU.Sc2ySwM_228.3065 Anthoceros agrestis HOM05D004893 ORTHO05D006320 8.0e-136 488.8 826 35.4
Carub.0007s0802 Capsella rubella HOM05D004893 ORTHO05D006320 1.0e-135 488.4 669 42.8
Pp3c7_4120 Physcomitrium patens HOM05D004893 ORTHO05D006320 2.2e-133 480.7 858 35.5
BcaB07g31639 Brassica carinata HOM05D004893 ORTHO05D006320 1.2e-126 458.4 815 39.1
SMO356G0292 Selaginella moellendorffii HOM05D004893 ORTHO05D006320 3.3e-121 440.3 845 33.5
BcaC09g52044 Brassica carinata HOM05D004893 ORTHO05D006320 6.2e-120 436.0 817 37.6
Cpa.g.sc523.1 Carica papaya HOM05D004893 ORTHO05D006320 4.9e-109 399.8 338 60.9
Oeu016137.1 Olea europaea HOM05D004893 ORTHO05D001543 4.7e-96 356.7 434 45.9
CBR_g49376 Chara braunii HOM05D004893 ORTHO05D006320 7.8e-91 339.3 758 30.9
CARHR240500 Cardamine hirsuta HOM05D004893 ORTHO05D006320 1.3e-77 295.4 365 45.8
Cre04.g215350 Chlamydomonas reinhardtii HOM05D004893 ORTHO05D006320 4.5e-62 243.8 717 28.7
BcaC04g22880 Brassica carinata HOM05D004893 ORTHO05D006320 1.8e-58 231.9 286 48.3
RcHm_v2.0_Chr4g0401681 Rosa chinensis HOM05D004893 ORTHO05D006320 3.0e-58 231.1 156 70.5
BolC9t54332H Brassica oleracea HOM05D004893 ORTHO05D006320 4.3e-57 227.3 276 48.9
C09p14300 Brassica napus HOM05D004893 ORTHO05D006320 4.8e-56 223.8 276 48.6
Dinv42518 Davidia involucrata HOM05D004893 ORTHO05D006320 1.2e-46 192.6 204 52.5
PRCOL_00005731 Prasinoderma coloniale HOM05D004893 ORTHO05D006320 1.0e-45 189.5 840 24.0
MBI02_g33733_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 2.2e-45 188.3 162 61.7
CANSAT11G1181 Cannabis sativa HOM05D004893 ORTHO05D006320 1.1e-44 186.0 199 50.3
MCO01G002 Micromonas commoda HOM05D004893 ORTHO05D006320 3.1e-39 167.9 454 28.4
SHI02896 Sapria himalayana HOM05D004893 ORTHO05D006320 4.5e-30 137.5 104 63.5
RcHm_v2.0_Chr4g0401691 Rosa chinensis HOM05D004893 ORTHO05D006320 1.3e-29 136.0 137 48.9
Cpa.g.sc95.47 Carica papaya HOM05D004893 ORTHO05D006320 1.4e-26 125.9 130 49.2
Glyma.11G074200 Glycine max HOM05D004893 ORTHO05D006320 1.0e-18 99.8 88 56.8
BolC9t54333H Brassica oleracea HOM05D004893 ORTHO05D006320 1.7e-13 82.4 63 65.1
EL10Ac6g14737 Beta vulgaris HOM05D004893 ORTHO05D006320 2.3e-13 82.0 62 62.9
Cfa026329 Carpinus fangiana HOM05D004893 ORTHO05D006320 9.5e-12 76.6 124 37.1
MBI12_g20565_MAGBIO Magnolia biondii HOM05D004893 ORTHO05D006320 6.1e-11 73.9 67 53.7
BraA09t36855Z Brassica rapa HOM05D004893 ORTHO05D006320 1.8e-10 72.4 102 40.2
A09p12110 Brassica napus HOM05D004893 ORTHO05D006320 5.2e-10 70.9 102 41.2
Lsat_1_v5_gn_5_51440 Lactuca sativa HOM05D004893 ORTHO05D048382 3.7e-08 64.7 100 41.0
arahy.Tifrunner.gnm1.ann1.F8045A Arachis hypogaea HOM05D062897 ORTHO05D023720 4.9e-08 64.3 62 54.8
arahy.Tifrunner.gnm1.ann1.09RZEI Arachis hypogaea HOM05D004893 ORTHO05D006320 1.8e-07 62.4 46 60.9
arahy.Tifrunner.gnm1.ann1.BHNU0I Arachis hypogaea HOM05D004893 ORTHO05D006320 3.2e-07 61.6 46 60.9


User provided reference genes

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