Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3599 Papaver somniferum HOM05D004600 ORTHO05D005471 2.4e-54 215.3 114 100.0
PSO063G0817 Papaver somniferum HOM05D004600 ORTHO05D005471 9.2e-54 213.4 114 99.1
Aqoxy3G02625 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.6e-45 184.5 114 86.8
Aqoxy4G01604 Aquilegia oxysepala HOM05D004600 ORTHO05D005471 4.6e-45 184.5 114 86.8
Cfa003694 Carpinus fangiana HOM05D004600 ORTHO05D005471 1.3e-44 183.0 114 80.7
QL02p099100 Quercus lobata HOM05D004600 ORTHO05D005471 3.0e-44 181.8 113 82.3
MD07G1080900 Malus domestica HOM05D004600 ORTHO05D005471 8.6e-44 180.3 115 81.7
Thecc.05G234100 Theobroma cacao HOM05D004600 ORTHO05D005471 2.5e-43 178.7 114 78.9
Eucgr.E01748 Eucalyptus grandis HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 79.8
FvH4_7g07840 Fragaria vesca HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 80.9
FvH4_7g08250 Fragaria vesca HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 80.9
FAN01G2185 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 80.9
FAN06G4779 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.6e-43 177.6 115 80.9
Gohir.D11G317800 Gossypium hirsutum HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.1
Gorai.007G347600 Gossypium raimondii HOM05D004600 ORTHO05D005471 5.6e-43 177.6 114 78.1
CiPaw.11G057300 Carya illinoinensis HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 79.8
Hma1.2p1_2581F.1_g324750 Hydrangea macrophylla HOM05D004600 ORTHO05D005471 7.3e-43 177.2 112 80.4
Hund03244 Selenicereus undatus HOM05D004600 ORTHO05D005471 7.3e-43 177.2 114 80.7
MD02G1232800 Malus domestica HOM05D004600 ORTHO05D005471 9.5e-43 176.8 115 79.1
Lalb_Chr10g0107261 Lupinus albus HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 78.1
GSVIVG01018312001 Vitis vinifera HOM05D004600 ORTHO05D005471 2.1e-42 175.6 114 77.2
CSS0000756 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 78.1
Prupe.2G105900 Prunus persica HOM05D004600 ORTHO05D005471 2.8e-42 175.3 115 79.1
PGR042G2124 Punica granatum HOM05D004600 ORTHO05D005471 2.8e-42 175.3 114 78.9
Gohir.A11G302200 Gossypium hirsutum HOM05D004600 ORTHO05D005471 4.7e-42 174.5 114 78.1
COL.COLO4_08664 Corchorus olitorius HOM05D004910 ORTHO05D006864 6.2e-42 174.1 110 79.1
Oeu011239.1 Olea europaea HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 77.2
TAR374G1537 Trochodendron aralioides HOM05D004600 ORTHO05D005471 8.1e-42 173.7 114 79.8
Manes.08G156800 Manihot esculenta HOM05D004600 ORTHO05D005471 1.4e-41 172.9 114 77.2
ECA234G0066 Erigeron canadensis HOM05D004600 ORTHO05D005471 1.8e-41 172.6 114 75.4
arahy.Tifrunner.gnm1.ann1.FL4BP3 Arachis hypogaea HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 77.2
CSS0047927 Camellia sinensis var. sinensis HOM05D004600 ORTHO05D005471 2.3e-41 172.2 114 77.2
RcHm_v2.0_Chr1g0341631 Rosa chinensis HOM05D004600 ORTHO05D005471 2.3e-41 172.2 115 78.3
Duzib177G1065 Durio zibethinus HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 77.2
Sopen01g030360 Solanum pennellii HOM05D004600 ORTHO05D005471 3.1e-41 171.8 114 76.3
Solyc01g068400.3 Solanum lycopersicum HOM05D004600 ORTHO05D005471 4.0e-41 171.4 114 76.3
Actinidia30941 Actinidia chinensis HOM05D004600 ORTHO05D005471 6.8e-41 170.6 112 77.7
arahy.Tifrunner.gnm1.ann1.8V97K8 Arachis hypogaea HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
EL10Ac2g03665 Beta vulgaris HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 76.3
HanXRQChr17g0540501 Helianthus annuus HOM05D004600 ORTHO05D005471 6.8e-41 170.6 114 75.4
HanXRQChr06g0175191 Helianthus annuus HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 74.6
MBI04_g38566_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 77.2
PGSC0003DMG400017954 Solanum tuberosum HOM05D004600 ORTHO05D005471 8.9e-41 170.2 114 75.4
MELO3C022478.2 Cucumis melo HOM05D004600 ORTHO05D005471 2.0e-40 169.1 112 74.1
AT2G30410 Arabidopsis thaliana HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 71.9
Ciclev10033122m.g Citrus clementina HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 77.2
Nitab4.5_0006200g0020 Nicotiana tabacum HOM05D004600 ORTHO05D005471 3.4e-40 168.3 114 73.7
ClCG06G000640 Citrullus lanatus HOM05D004600 ORTHO05D005471 4.4e-40 167.9 112 74.1
Ca_06414_v3 Cicer arietinum L. HOM05D004600 ORTHO05D005471 5.8e-40 167.5 115 75.7
Sed0013640 Sechium edule HOM05D004600 ORTHO05D005471 5.8e-40 167.5 112 74.1
Cpa.g.sc73.56 Carica papaya HOM05D004600 ORTHO05D005471 7.5e-40 167.2 114 75.4
CsaV3_6G006410 Cucumis sativus L. HOM05D004600 ORTHO05D005471 7.5e-40 167.2 112 74.1
Carub.0004s1157 Capsella rubella HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 71.1
Phvul.008G274500 Phaseolus vulgaris HOM05D004600 ORTHO05D005471 9.8e-40 166.8 114 75.4
Peaxi162Scf00309g00111 Petunia axillaris HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 73.7
THA.LOC104805733 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 1.3e-39 166.4 114 71.9
Migut.N01726 Erythranthe guttata HOM05D004600 ORTHO05D005471 1.7e-39 166.0 114 73.7
CARHR123850 Cardamine hirsuta HOM05D004600 ORTHO05D005471 2.2e-39 165.6 112 71.4
Thhalv10017954m.g Eutrema salsugineum HOM05D004600 ORTHO05D005471 2.2e-39 165.6 114 71.9
Glyma.12G219600 Glycine max HOM05D004600 ORTHO05D005471 2.2e-39 165.6 110 76.4
MSTRG.28140 Avicennia marina HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 72.8
SalBow5G2739 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 72.8
SalBow5G4978 Salvia bowleyana HOM05D004600 ORTHO05D005471 2.9e-39 165.2 114 72.8
Manes.09G132900 Manihot esculenta HOM05D004600 ORTHO05D005471 3.7e-39 164.9 112 72.3
Lsat_1_v5_gn_3_31540 Lactuca sativa HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 72.8
THA.LOC104821611 Tarenaya hassleriana HOM05D004600 ORTHO05D005471 4.9e-39 164.5 114 71.1
Nn6g33746 Nelumbo nucifera HOM05D004600 ORTHO05D005471 6.4e-39 164.1 114 77.2
TPR.G31719 Trifolium pratense HOM05D004600 ORTHO05D005471 6.4e-39 164.1 115 73.9
CAN.G179.37 Capsicum annuum HOM05D004600 ORTHO05D005471 8.3e-39 163.7 114 73.7
Ciclev10017245m.g Citrus clementina HOM05D004600 ORTHO05D005471 8.3e-39 163.7 114 74.6
CANSAT56G0524 Cannabis sativa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 111 75.7
CANSAT80G0198 Cannabis sativa HOM05D004600 ORTHO05D005471 1.1e-38 163.3 111 75.7
DCAR_002257 Daucus carota HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 72.3
Sed0004677 Sechium edule HOM05D004600 ORTHO05D005471 1.1e-38 163.3 112 72.3
VMungo0647G0484 Vigna mungo HOM05D004600 ORTHO05D005471 1.1e-38 163.3 114 71.9
Actinidia05778 Actinidia chinensis HOM05D000441 ORTHO05D005471 1.4e-38 162.9 104 80.8
TWI32G0106 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 1.4e-38 162.9 112 74.1
Rhsim07G0038000 Rhododendron simsii HOM05D004600 ORTHO05D005471 1.9e-38 162.5 114 73.7
Potri.013G071100 Populus trichocarpa HOM05D004600 ORTHO05D005471 3.2e-38 161.8 113 71.7
TWI34G1465 Tripterygium wilfordii HOM05D004600 ORTHO05D005471 3.2e-38 161.8 112 74.1
FAN10G3323 Fragaria x ananassa HOM05D004600 ORTHO05D005471 4.1e-38 161.4 146 63.7
AUR62010214 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 71.1
AUR62023888 Chenopodium quinoa HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 71.1
MBI14_g39049_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 5.4e-38 161.0 114 74.6
SpUn0968_0010 Schrenkiella parvula HOM05D004600 ORTHO05D005471 7.1e-38 160.6 115 70.4
CDE02G3136 Ceratophyllum demersum HOM05D004600 ORTHO05D005471 1.2e-37 159.8 114 71.1
Glyma.13G281700 Glycine max HOM05D004600 ORTHO05D005471 1.2e-37 159.8 112 73.2
SalBow2G1105 Salvia bowleyana HOM05D004600 ORTHO05D005471 1.6e-37 159.5 114 71.1
AL136U10020 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 69.3
AL4G25280 Arabidopsis lyrata HOM05D004600 ORTHO05D005471 2.1e-37 159.1 114 69.3
Cc10_g08750 Coffea canephora HOM05D004600 ORTHO05D005471 2.7e-37 158.7 108 72.2
Sabra13G0062000 Salix brachista HOM05D004600 ORTHO05D005471 2.7e-37 158.7 113 71.7
DCAR_002240 Daucus carota HOM05D000064 ORTHO05D001307 3.5e-37 158.3 105 76.2
ATR0594G180 Amborella trichopoda HOM05D004600 ORTHO05D005471 4.6e-37 157.9 114 71.9
HPP92_003331 Vanilla planifolia HOM05D004600 ORTHO05D005471 7.8e-37 157.1 112 73.2
LjContig00272g0018481 Lotus japonicus HOM05D004600 ORTHO05D005471 1.0e-36 156.8 114 69.3
BcaC02g11135 Brassica carinata HOM05D004600 ORTHO05D005471 2.3e-36 155.6 114 70.2
A05p15020 Brassica napus HOM05D004600 ORTHO05D005471 2.3e-36 155.6 114 70.2
BolC4t23549H Brassica oleracea HOM05D004600 ORTHO05D005471 2.3e-36 155.6 114 70.2
BraA05t20428Z Brassica rapa HOM05D004600 ORTHO05D005471 2.3e-36 155.6 114 70.2
Medtr5g094860 Medicago truncatula HOM05D004600 ORTHO05D005471 3.0e-36 155.2 115 71.3
Medtr5g094290 Medicago truncatula HOM05D004600 ORTHO05D005471 3.9e-36 154.8 115 71.3
C04p20100 Brassica napus HOM05D004600 ORTHO05D005471 5.1e-36 154.5 114 69.3
Carub.0004s0600 Capsella rubella HOM05D004600 ORTHO05D005471 5.1e-36 154.5 112 69.6
Peaxi162Scf00519g00014 Petunia axillaris HOM05D004600 ORTHO05D005471 1.1e-35 153.3 104 74.0
Nitab4.5_0002801g0010 Nicotiana tabacum HOM05D004600 ORTHO05D005471 1.5e-35 152.9 145 58.6
BcaB02g10324 Brassica carinata HOM05D004600 ORTHO05D005471 3.3e-35 151.8 114 68.4
vmacro13519 Vaccinium macrocarpon HOM05D004600 ORTHO05D005471 2.1e-34 149.1 142 59.2
BcaB01g04106 Brassica carinata HOM05D004600 ORTHO05D005471 2.8e-34 148.7 114 67.5
SEGI_02498 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 6.2e-34 147.5 114 67.5
PSO017G3083 Papaver somniferum HOM05D004600 ORTHO05D005471 2.6e-32 142.1 114 72.8
SEGI_10368 Sequoiadendron giganteum HOM05D004600 ORTHO05D005471 3.4e-32 141.7 114 65.8
Haze_15791 Corylus avellana HOM05D004600 ORTHO05D005471 4.4e-32 141.4 80 88.8
Aa31LG2G2070 Aethionema arabicum HOM05D004600 ORTHO05D005471 9.9e-32 140.2 114 64.0
Os02g0816500 Oryza sativa ssp. japonica HOM05D004600 ORTHO05D005471 2.2e-31 139.0 84 83.3
Atru.chr2.1648 Acer truncatum HOM05D004600 ORTHO05D005471 1.9e-30 136.0 80 85.0
COL.COLO4_33093 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.4e-30 135.6 91 74.7
Duzib106G0868 Durio zibethinus HOM05D004600 ORTHO05D005471 3.2e-30 135.2 78 87.2
Zm00001eb258870 Zea mays HOM05D004600 ORTHO05D005471 4.1e-30 134.8 79 84.8
Aa31LG5G6310 Aethionema arabicum HOM05D004600 ORTHO05D005471 1.6e-29 132.9 77 84.4
unitig_22.g5795 Utricularia gibba HOM05D004600 ORTHO05D005471 7.8e-29 130.6 111 57.7
BcaNung06780 Brassica carinata HOM05D004600 ORTHO05D005471 5.1e-28 127.9 100 66.0
arahy.Tifrunner.gnm1.ann1.AN2C62 Arachis hypogaea HOM05D004600 ORTHO05D005471 1.5e-27 126.3 94 71.3
Psat2g010800 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 74.7
Psat6g223560 Pisum sativum HOM05D004600 ORTHO05D005471 1.2e-26 123.2 83 74.7
COL.COLO4_34174 Corchorus olitorius HOM05D004600 ORTHO05D005471 2.4e-25 119.0 72 83.3
RcHm_v2.0_Chr1g0341741 Rosa chinensis HOM05D004600 ORTHO05D005471 6.9e-25 117.5 65 89.2
arahy.Tifrunner.gnm1.ann1.TEM6YH Arachis hypogaea HOM05D004600 ORTHO05D005471 1.2e-24 116.7 77 75.3
SMO140G0024 Selaginella moellendorffii HOM05D004600 ORTHO05D005471 1.3e-23 113.2 74 75.7
Mapoly0038s0031 Marchantia polymorpha HOM05D004600 ORTHO05D005471 3.8e-23 111.7 108 50.9
CBR_g52286 Chara braunii HOM05D004600 ORTHO05D005471 3.2e-22 108.6 104 58.7
RhsimUnG0214300 Rhododendron simsii HOM05D004600 ORTHO05D005471 5.4e-22 107.8 112 52.7
AagrBONN_evm.TU.Sc2ySwM_368.563 Anthoceros agrestis HOM05D001974 ORTHO05D001995 7.8e-21 104.0 109 52.3
Pp3c8_15900 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.1e-20 101.3 109 48.6
BcaNung05666 Brassica carinata HOM05D004600 ORTHO05D005471 2.5e-19 99.0 77 66.2
arahy.Tifrunner.gnm1.ann1.M3PSJH Arachis hypogaea HOM05D004254 ORTHO05D005184 4.3e-19 98.2 68 72.1
BcaNung05668 Brassica carinata HOM05D004600 ORTHO05D005471 4.3e-19 98.2 77 64.9
Sc01g0008330 Simmondsia chinensis HOM05D004600 ORTHO05D005471 5.8e-16 87.8 65 66.2
COL.COLO4_33692 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-15 86.7 100 50.0
Pp3c5_8620 Physcomitrium patens HOM05D004600 ORTHO05D005471 1.7e-15 86.3 79 51.9
AUR62013210 Chenopodium quinoa HOM05D004600 ORTHO05D005471 2.9e-15 85.5 63 65.1
MCO15G208 Micromonas commoda HOM05D004600 ORTHO05D005471 6.4e-15 84.3 104 50.0
SGA_v2.0_scaffold77G25264 Striga asiatica HOM05D000763 ORTHO05D000599 1.4e-14 83.2 95 51.6
Cre16.g670800 Chlamydomonas reinhardtii HOM05D004600 ORTHO05D005471 3.2e-14 82.0 106 44.3
MBI18_g40062_MAGBIO Magnolia biondii HOM05D004600 ORTHO05D005471 3.2e-14 82.0 45 88.9
RcHm_v2.0_Chr1g0341961 Rosa chinensis HOM05D004600 ORTHO05D005471 3.2e-14 82.0 51 82.4
FAN01G1805 Fragaria x ananassa HOM05D004600 ORTHO05D005471 5.4e-14 81.3 56 76.8
Pp3c15_6440 Physcomitrium patens HOM05D004600 ORTHO05D005471 7.1e-14 80.9 104 43.3
RcHm_v2.0_Chr4g0446751 Rosa chinensis HOM05D004600 ORTHO05D005471 2.1e-13 79.3 50 80.0
RcHm_v2.0_Chr3g0457191 Rosa chinensis HOM05D004600 ORTHO05D005471 1.8e-12 76.3 51 78.4
HanXRQChr10g0286821 Helianthus annuus HOM05D004600 ORTHO05D005471 2.3e-12 75.9 43 88.4
PRCOL_00002235 Prasinoderma coloniale HOM05D004600 ORTHO05D005471 8.7e-12 73.9 106 39.6
RcHm_v2.0_Chr1g0342531 Rosa chinensis HOM05D004600 ORTHO05D005471 8.7e-12 73.9 43 86.0
HanXRQChr02g0044381 Helianthus annuus HOM05D004600 ORTHO05D005471 1.9e-11 72.8 43 83.7
COL.COLO4_28352 Corchorus olitorius HOM05D004600 ORTHO05D005471 1.3e-10 70.1 51 66.7
Oeu019263.1 Olea europaea HOM05D004600 ORTHO05D005471 2.1e-10 69.3 55 65.5
A03p17010 Brassica napus HOM05D004600 ORTHO05D005471 1.1e-09 67.0 60 56.7
arahy.Tifrunner.gnm1.ann1.3LH6CZ Arachis hypogaea HOM05D004600 ORTHO05D021519 1.8e-09 66.2 92 42.4
C03p20070 Brassica napus HOM05D004600 ORTHO05D005471 4.0e-09 65.1 99 45.5
Pp3c12_22810 Physcomitrium patens HOM05D004600 ORTHO05D005471 5.3e-09 64.7 59 50.8
COL.COLO4_33704 Corchorus olitorius HOM05D004600 ORTHO05D005471 4.5e-08 61.6 59 52.5
BcaC01g05996 Brassica carinata HOM05D004600 ORTHO05D005471 2.2e-07 59.3 97 43.3


User provided reference genes

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