Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3547 Papaver somniferum HOM05D004972 ORTHO05D006309 3.7e-131 471.5 227 100.0
PSO063G1195 Papaver somniferum HOM05D004972 ORTHO05D006309 1.1e-130 469.9 227 99.1
TAR629G1532 Trochodendron aralioides HOM05D004972 ORTHO05D006309 4.2e-98 361.7 227 77.5
MBI07_g18719_MAGBIO Magnolia biondii HOM05D004972 ORTHO05D006309 1.4e-93 346.7 230 73.5
Nn2g14330 Nelumbo nucifera HOM05D004972 ORTHO05D006309 2.9e-91 339.0 227 72.2
GSVIVG01011786001 Vitis vinifera HOM05D004972 ORTHO05D006309 1.1e-90 337.0 227 73.1
CANSAT01G2336 Cannabis sativa HOM05D004972 ORTHO05D006309 3.2e-90 335.5 227 70.9
Ciclev10016597m.g Citrus clementina HOM05D004972 ORTHO05D006309 2.7e-89 332.4 227 70.9
MD16G1031300 Malus domestica HOM05D004972 ORTHO05D006309 2.7e-89 332.4 227 69.6
MD13G1028600 Malus domestica HOM05D004972 ORTHO05D006309 3.5e-89 332.0 227 69.6
Cfa008573 Carpinus fangiana HOM05D004972 ORTHO05D006309 6.0e-89 331.3 227 70.9
Manes.06G062200 Manihot esculenta HOM05D004972 ORTHO05D006309 6.0e-89 331.3 227 69.6
Dinv16188 Davidia involucrata HOM05D004972 ORTHO05D006309 5.1e-88 328.2 227 72.2
Aqoxy3G04360 Aquilegia oxysepala HOM05D004972 ORTHO05D006309 1.1e-87 327.0 227 68.3
Potri.010G115800 Populus trichocarpa HOM05D004972 ORTHO05D006309 1.1e-87 327.0 227 69.2
FAN07G2072 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.5e-87 326.6 227 68.3
CiPaw.05G247000 Carya illinoinensis HOM05D004972 ORTHO05D006309 1.9e-87 326.2 227 68.3
Nitab4.5_0004692g0050 Nicotiana tabacum HOM05D004972 ORTHO05D006309 3.3e-87 325.5 225 69.3
Sc04g0005680 Simmondsia chinensis HOM05D004972 ORTHO05D006309 4.3e-87 325.1 228 70.6
COL.COLO4_10156 Corchorus olitorius HOM05D004972 ORTHO05D006309 5.6e-87 324.7 227 69.6
Sopen05g004230 Solanum pennellii HOM05D004972 ORTHO05D006309 1.6e-86 323.2 227 68.3
Thecc.04G114900 Theobroma cacao HOM05D004972 ORTHO05D006309 1.6e-86 323.2 227 69.2
Actinidia15243 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.1e-86 322.8 227 69.6
Actinidia36689 Actinidia chinensis HOM05D004972 ORTHO05D006309 2.1e-86 322.8 227 69.6
Rhsim09G0068400 Rhododendron simsii HOM05D004972 ORTHO05D006309 2.1e-86 322.8 227 68.3
Solyc05g008400.4 Solanum lycopersicum HOM05D004972 ORTHO05D006309 2.8e-86 322.4 227 67.8
RcHm_v2.0_Chr4g0433731 Rosa chinensis HOM05D004972 ORTHO05D006309 4.8e-86 321.6 227 66.1
FvH4_4g26160 Fragaria vesca HOM05D004972 ORTHO05D006309 6.2e-86 321.2 227 67.4
PGSC0003DMG400030511 Solanum tuberosum HOM05D004972 ORTHO05D006309 6.2e-86 321.2 227 67.8
Hma1.2p1_0114F.1_g055290 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 8.1e-86 320.9 227 70.5
Actinidia14945 Actinidia chinensis HOM05D004972 ORTHO05D006309 1.1e-85 320.5 227 69.2
FAN12G1431 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-85 320.5 227 67.4
FAN12G3562 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.1e-85 320.5 227 67.4
Gohir.D12G057200 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.1e-85 320.5 227 68.7
CiPaw.06G013900 Carya illinoinensis HOM05D004972 ORTHO05D006309 2.4e-85 319.3 225 68.4
FAN17G1326 Fragaria x ananassa HOM05D004972 ORTHO05D006309 2.4e-85 319.3 227 67.4
Dinv05881 Davidia involucrata HOM05D004972 ORTHO05D006309 3.1e-85 318.9 226 69.5
FAN22G0152 Fragaria x ananassa HOM05D004972 ORTHO05D006309 4.0e-85 318.5 227 67.0
Peaxi162Scf00205g00614 Petunia axillaris HOM05D004972 ORTHO05D006309 4.0e-85 318.5 227 67.0
CAN.G1693.8 Capsicum annuum HOM05D004972 ORTHO05D006309 5.3e-85 318.2 227 68.3
AUR62014195 Chenopodium quinoa HOM05D004972 ORTHO05D006309 6.9e-85 317.8 227 68.3
Migut.L00755 Erythranthe guttata HOM05D004972 ORTHO05D006309 1.2e-84 317.0 227 67.0
Gohir.A12G057400 Gossypium hirsutum HOM05D004972 ORTHO05D006309 5.8e-84 314.7 227 67.8
DCAR_030202 Daucus carota HOM05D004972 ORTHO05D006309 9.9e-84 313.9 228 67.5
Gohir.A07G173000 Gossypium hirsutum HOM05D004972 ORTHO05D006309 9.9e-84 313.9 227 67.8
Gohir.D07G180500 Gossypium hirsutum HOM05D004972 ORTHO05D006309 1.3e-83 313.5 227 67.8
Gorai.001G201700 Gossypium raimondii HOM05D004972 ORTHO05D006309 1.3e-83 313.5 227 67.8
Nn6g34668 Nelumbo nucifera HOM05D004972 ORTHO05D006309 1.7e-83 313.2 227 67.4
THA.LOC104825471 Tarenaya hassleriana HOM05D004972 ORTHO05D006309 1.7e-83 313.2 227 65.6
CSS0013445 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.9e-83 312.4 228 68.4
CSS0024462 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.9e-83 312.4 228 68.4
Lj6C749G10 Lonicera japonica HOM05D004972 ORTHO05D006309 2.9e-83 312.4 226 68.6
TWI79G0317 Tripterygium wilfordii HOM05D004972 ORTHO05D006309 3.8e-83 312.0 227 68.3
Atru.chr11.981 Acer truncatum HOM05D004972 ORTHO05D006309 1.1e-82 310.5 227 66.5
QL01p002347 Quercus lobata HOM05D004972 ORTHO05D006309 1.4e-82 310.1 281 56.9
CsaV3_5G034860 Cucumis sativus L. HOM05D004972 ORTHO05D006309 1.9e-82 309.7 227 66.1
Sed0026570 Sechium edule HOM05D004972 ORTHO05D006309 2.4e-82 309.3 227 65.6
Eucgr.G02212 Eucalyptus grandis HOM05D004972 ORTHO05D006309 3.2e-82 308.9 227 67.4
Oeu044327.1 Olea europaea HOM05D004972 ORTHO05D006309 4.2e-82 308.5 227 67.4
MSTRG.882 Avicennia marina HOM05D004972 ORTHO05D006309 7.1e-82 307.8 227 65.6
EL10Ac6g14241 Beta vulgaris HOM05D004972 ORTHO05D006309 1.6e-81 306.6 227 64.8
SalBow8G2598 Salvia bowleyana HOM05D004972 ORTHO05D006309 1.6e-81 306.6 227 65.6
SGA_v2.0_scaffold50G18531 Striga asiatica HOM05D004972 ORTHO05D006309 1.6e-81 306.6 227 66.1
Prupe.1G321700 Prunus persica HOM05D004972 ORTHO05D006309 2.1e-81 306.2 227 65.2
Hund24992 Selenicereus undatus HOM05D004972 ORTHO05D006309 2.1e-81 306.2 262 59.9
Cc11_g09090 Coffea canephora HOM05D004972 ORTHO05D006309 7.9e-81 304.3 227 67.4
HPP92_015449 Vanilla planifolia HOM05D004972 ORTHO05D006309 1.0e-80 303.9 230 64.3
BcaC04g19133 Brassica carinata HOM05D004972 ORTHO05D006309 5.6e-79 298.1 227 62.6
A10p24970 Brassica napus HOM05D004972 ORTHO05D006309 5.6e-79 298.1 227 62.6
BolC9t59224H Brassica oleracea HOM05D004972 ORTHO05D006309 5.6e-79 298.1 227 62.6
Lsat_1_v5_gn_8_42761 Lactuca sativa HOM05D004972 ORTHO05D006309 7.4e-79 297.7 227 62.6
C09p63840 Brassica napus HOM05D004972 ORTHO05D006309 1.3e-78 297.0 227 62.1
BraA10t44559Z Brassica rapa HOM05D004972 ORTHO05D006309 1.3e-78 297.0 227 62.1
AL6G23850 Arabidopsis lyrata HOM05D004972 ORTHO05D006309 1.6e-78 296.6 227 63.0
Carub.0006s1141 Capsella rubella HOM05D004972 ORTHO05D006309 2.1e-78 296.2 227 62.6
VMungo0720G3073 Vigna mungo HOM05D004972 ORTHO05D006309 2.1e-78 296.2 227 62.6
Duzib133G0650 Durio zibethinus HOM05D004972 ORTHO05D006309 2.8e-78 295.8 199 71.4
Phvul.007G035700 Phaseolus vulgaris HOM05D004972 ORTHO05D006309 2.8e-78 295.8 227 63.0
HanXRQChr08g0212881 Helianthus annuus HOM05D004972 ORTHO05D006309 3.7e-78 295.4 227 61.7
TPR.G4886 Trifolium pratense HOM05D004972 ORTHO05D006309 6.2e-78 294.7 227 62.6
AT5G13240 Arabidopsis thaliana HOM05D004972 ORTHO05D006309 1.1e-77 293.9 227 62.6
Cpa.g.sc65.108 Carica papaya HOM05D004972 ORTHO05D006309 1.4e-77 293.5 199 70.9
Thhalv10014602m.g Eutrema salsugineum HOM05D004972 ORTHO05D006309 3.1e-77 292.4 227 62.1
Nitab4.5_0004092g0040 Nicotiana tabacum HOM05D004972 ORTHO05D006309 4.0e-77 292.0 268 56.7
CARHR200210 Cardamine hirsuta HOM05D004972 ORTHO05D006309 6.9e-77 291.2 229 62.0
HanXRQChr07g0189871 Helianthus annuus HOM05D004972 ORTHO05D006309 6.9e-77 291.2 227 60.4
Lalb_Chr06g0165661 Lupinus albus HOM05D004972 ORTHO05D006309 6.9e-77 291.2 227 62.6
CDE09G0103 Ceratophyllum demersum HOM05D004972 ORTHO05D006309 1.5e-76 290.0 229 62.9
Ca_11105_v3 Cicer arietinum L. HOM05D004972 ORTHO05D006309 1.5e-76 290.0 227 61.7
Sp6g30750 Schrenkiella parvula HOM05D004972 ORTHO05D006309 1.5e-76 290.0 227 61.2
SGA_v2.0_scaffold38G15047 Striga asiatica HOM05D004972 ORTHO05D006309 2.0e-76 289.7 227 62.1
Medtr1g108610 Medicago truncatula HOM05D004972 ORTHO05D006309 2.6e-76 289.3 234 60.3
Lj5g0002039 Lotus japonicus HOM05D004972 ORTHO05D006309 3.4e-76 288.9 227 61.7
vmacro01431 Vaccinium macrocarpon HOM05D004972 ORTHO05D006309 3.4e-76 288.9 210 67.1
Glyma.10G266000 Glycine max HOM05D004972 ORTHO05D006309 1.0e-75 287.3 227 61.7
Psat6g222200 Pisum sativum HOM05D004972 ORTHO05D006309 2.2e-75 286.2 227 60.4
ECA233G6099 Erigeron canadensis HOM05D004972 ORTHO05D006309 4.9e-75 285.0 227 61.7
Ah.02g128040 Amaranthus hybridus HOM05D004972 ORTHO05D006309 9.3e-74 280.8 226 61.1
Glyma.20G124600 Glycine max HOM05D004972 ORTHO05D006309 9.3e-74 280.8 228 60.5
Os04g0662900 Oryza sativa ssp. japonica HOM05D004972 ORTHO05D006309 1.6e-73 280.0 227 58.1
Haze_11044 Corylus avellana HOM05D004972 ORTHO05D006309 1.0e-72 277.3 227 62.6
Aa31LG3G14420 Aethionema arabicum HOM05D004972 ORTHO05D006309 2.5e-71 272.7 227 59.0
arahy.Tifrunner.gnm1.ann1.YXX0BK Arachis hypogaea HOM05D004972 ORTHO05D006309 2.5e-71 272.7 227 57.7
arahy.Tifrunner.gnm1.ann1.DS7XTJ Arachis hypogaea HOM05D004972 ORTHO05D006309 2.1e-70 269.6 227 56.8
arahy.Tifrunner.gnm1.ann1.F2FLG1 Arachis hypogaea HOM05D004972 ORTHO05D006309 2.1e-70 269.6 227 57.3
Zm00001eb246210 Zea mays HOM05D004972 ORTHO05D006309 4.8e-70 268.5 212 59.4
ATR0315G127 Amborella trichopoda HOM05D004972 ORTHO05D006309 5.8e-68 261.5 228 57.9
SEGI_23519 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 5.0e-67 258.5 227 55.5
unitig_0.g2334 Utricularia gibba HOM05D004972 ORTHO05D006309 1.9e-66 256.5 221 56.1
PGR119G0027 Punica granatum HOM05D004972 ORTHO05D006309 1.6e-65 253.4 227 59.0
ClCG05G022260 Citrullus lanatus HOM05D004972 ORTHO05D006309 6.1e-65 251.5 227 57.3
AUR62041239 Chenopodium quinoa HOM05D004972 ORTHO05D006309 8.7e-64 247.7 178 68.0
MELO3C012297.2 Cucumis melo HOM05D004972 ORTHO05D006309 4.1e-61 238.8 179 64.2
arahy.Tifrunner.gnm1.ann1.UKIC3J Arachis hypogaea HOM05D004972 ORTHO05D006309 2.9e-59 232.6 245 50.6
Migut.L00658 Erythranthe guttata HOM05D004972 ORTHO05D006309 5.0e-59 231.9 227 54.6
Sabra10G0085700 Salix brachista HOM05D004972 ORTHO05D006309 6.5e-59 231.5 255 50.6
Sabra10G0087400 Salix brachista HOM05D004972 ORTHO05D006309 6.5e-59 231.5 255 50.6
Gorai.008G060200 Gossypium raimondii HOM05D004972 ORTHO05D006309 8.8e-56 221.1 227 53.7
Duzib138G1958 Durio zibethinus HOM05D004972 ORTHO05D006309 1.5e-55 220.3 252 50.0
BolC2t06543H Brassica oleracea HOM05D004972 ORTHO05D006309 7.4e-55 218.0 233 51.9
Pp3c11_22300 Physcomitrium patens HOM05D004972 ORTHO05D006309 4.8e-54 215.3 227 47.1
AagrBONN_evm.TU.Sc2ySwM_344.4231 Anthoceros agrestis HOM05D004972 ORTHO05D006309 1.8e-53 213.4 222 50.5
Mapoly0012s0169 Marchantia polymorpha HOM05D004972 ORTHO05D006309 5.9e-52 208.4 227 46.7
Cre08.g364250 Chlamydomonas reinhardtii HOM05D004972 ORTHO05D006309 8.8e-48 194.5 240 44.2
MCO09G688 Micromonas commoda HOM05D004972 ORTHO05D006309 2.2e-46 189.9 238 43.7
C02p06000 Brassica napus HOM05D004972 ORTHO05D006309 1.2e-44 184.1 166 55.4
FAN17G1863 Fragaria x ananassa HOM05D004972 ORTHO05D006309 1.7e-43 180.3 124 65.3
PRCOL_00004209 Prasinoderma coloniale HOM05D004972 ORTHO05D006309 1.7e-43 180.3 230 42.2
CSS0029214 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-33 146.7 104 67.3
CSS0034104 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.1e-33 146.7 104 67.3
BcaNung01872 Brassica carinata HOM05D004972 ORTHO05D006309 2.7e-33 146.4 134 56.7
SHI16322 Sapria himalayana HOM05D004972 ORTHO05D006309 1.8e-32 143.7 191 44.5
Pp3c7_4620 Physcomitrium patens HOM05D004972 ORTHO05D006309 2.8e-30 136.3 150 48.0
Hma1.2p1_1593F.1_g292560 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 5.2e-24 115.5 74 71.6
Zm00001eb219440 Zea mays HOM05D009386 ORTHO05D011419 1.0e-19 101.3 79 55.7
Gorai.001G193400 Gossypium raimondii HOM05D004972 ORTHO05D029864 7.2e-18 95.1 107 46.7
Cfa026650 Carpinus fangiana HOM05D004972 ORTHO05D006309 2.1e-17 93.6 226 31.4
Zm00001eb025950 Zea mays HOM05D004972 ORTHO05D006309 6.1e-17 92.0 80 53.8
CDE02G3434 Ceratophyllum demersum HOM05D004972 ORTHO05D000215 4.0e-16 89.4 69 66.7
Gorai.010G145600 Gossypium raimondii HOM05D004972 ORTHO05D029864 6.4e-14 82.0 81 53.1
Gohir.D01G091150 Gossypium hirsutum HOM05D004972 ORTHO05D029864 4.1e-13 79.3 124 37.9
Hma1.2p1_0813F.1_g222490 Hydrangea macrophylla HOM05D004972 ORTHO05D006309 2.7e-12 76.6 51 72.5
CSS0010746 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.6e-12 75.9 51 68.6
CSS0040756 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 4.6e-12 75.9 51 68.6
CSS0044245 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 1.0e-11 74.7 51 68.6
Gorai.001G223500 Gossypium raimondii HOM05D004972 ORTHO05D029864 1.6e-09 67.4 51 58.8
SEGI_16480 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 2.8e-09 66.6 51 62.7
CSS0013064 Camellia sinensis var. sinensis HOM05D004972 ORTHO05D006309 2.6e-07 60.1 51 62.7
SEGI_41622 Sequoiadendron giganteum HOM05D004972 ORTHO05D006309 1.3e-06 57.8 50 54.0
Gohir.D11G085800 Gossypium hirsutum HOM05D001136 ORTHO05D011526 6.4e-06 55.5 37 62.2


User provided reference genes

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