Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3544 Papaver somniferum HOM05D004654 ORTHO05D005414 1.4e-122 443.0 222 100.0
PSO566G0049 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-118 429.9 222 96.4
PSO566G0349 Papaver somniferum HOM05D004654 ORTHO05D005414 1.2e-118 429.9 222 96.4
Aqoxy5G02573 Aquilegia oxysepala HOM05D004654 ORTHO05D005414 2.3e-37 159.8 240 49.2
TAR374G0741 Trochodendron aralioides HOM05D004654 ORTHO05D005414 9.2e-34 147.9 234 49.1
MBI03_g05124_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 1.2e-33 147.5 227 45.4
TAR622G1006 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.6e-33 147.1 211 46.4
MBI03_g34062_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 6.0e-33 145.2 214 46.3
QL02p056026 Quercus lobata HOM05D004654 ORTHO05D005414 1.8e-29 133.7 224 44.6
Cpa.g.sc108.18 Carica papaya HOM05D004654 ORTHO05D005414 6.8e-29 131.7 228 44.7
QL02p054970 Quercus lobata HOM05D004654 ORTHO05D005414 2.2e-27 126.7 205 45.9
Thhalv10019176m.g Eutrema salsugineum HOM05D004654 ORTHO05D005414 4.9e-27 125.6 213 43.2
Ciclev10012875m.g Citrus clementina HOM05D004654 ORTHO05D005414 6.4e-27 125.2 212 42.9
ATR0618G257 Amborella trichopoda HOM05D004654 ORTHO05D005414 1.4e-26 124.0 220 42.3
MBI06_g28670_MAGBIO Magnolia biondii HOM05D004654 ORTHO05D005414 2.1e-25 120.2 197 44.2
Atru.chr1.2194 Acer truncatum HOM05D004654 ORTHO05D005414 7.8e-25 118.2 213 43.2
Ah.06g191460 Amaranthus hybridus HOM05D004654 ORTHO05D005414 1.0e-24 117.9 230 39.6
CDE04G3704 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 1.0e-24 117.9 207 41.5
AL2G22850 Arabidopsis lyrata HOM05D004654 ORTHO05D005414 1.3e-24 117.5 219 42.9
Cfa008008 Carpinus fangiana HOM05D004654 ORTHO05D005414 5.1e-24 115.5 213 47.9
Manes.02G082600 Manihot esculenta HOM05D004654 ORTHO05D005414 5.1e-24 115.5 221 43.9
CiPaw.03G008900 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.6e-24 115.2 221 43.9
CiPaw.07G102900 Carya illinoinensis HOM05D004654 ORTHO05D005414 6.6e-24 115.2 215 45.1
Manes.01G125100 Manihot esculenta HOM05D004654 ORTHO05D005414 6.6e-24 115.2 203 43.3
Aa31LG2G2610 Aethionema arabicum HOM05D004654 ORTHO05D005414 8.6e-24 114.8 201 40.8
CiPaw.13G067300 Carya illinoinensis HOM05D004654 ORTHO05D005414 1.1e-23 114.4 219 44.3
Carub.0002s1154 Capsella rubella HOM05D004654 ORTHO05D005414 1.5e-23 114.0 216 43.1
AUR62004739 Chenopodium quinoa HOM05D004654 ORTHO05D005414 1.9e-23 113.6 227 38.8
CDE07G1822 Ceratophyllum demersum HOM05D004654 ORTHO05D005414 2.5e-23 113.2 205 40.0
Sp5g20670 Schrenkiella parvula HOM05D004654 ORTHO05D005414 2.5e-23 113.2 221 39.8
THA.LOC104822158 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.3e-23 112.8 204 40.2
THA.LOC104823831 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 3.3e-23 112.8 202 40.1
AT1G65720 Arabidopsis thaliana HOM05D004654 ORTHO05D005414 4.3e-23 112.5 217 41.0
vmacro20421 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 4.3e-23 112.5 229 41.9
A07p32950 Brassica napus HOM05D004654 ORTHO05D005414 7.3e-23 111.7 211 40.3
MD09G1282600 Malus domestica HOM05D004654 ORTHO05D005414 7.3e-23 111.7 222 38.7
THA.LOC104805666 Tarenaya hassleriana HOM05D004654 ORTHO05D005414 7.3e-23 111.7 201 41.3
CARHR057580 Cardamine hirsuta HOM05D004654 ORTHO05D005414 1.6e-22 110.5 207 42.5
Haze_14051 Corylus avellana HOM05D004654 ORTHO05D005414 2.1e-22 110.2 222 44.6
HPP92_007306 Vanilla planifolia HOM05D004654 ORTHO05D005414 2.1e-22 110.2 202 41.6
Prupe.3G011600 Prunus persica HOM05D004654 ORTHO05D005414 2.8e-22 109.8 208 38.9
BraA07t30922Z Brassica rapa HOM05D004654 ORTHO05D005414 3.6e-22 109.4 211 38.9
Ah.04g162850 Amaranthus hybridus HOM05D004654 ORTHO05D005414 4.7e-22 109.0 228 39.0
BolC6t39010H Brassica oleracea HOM05D004654 ORTHO05D005414 6.2e-22 108.6 213 41.8
Dinv28280 Davidia involucrata HOM05D004654 ORTHO05D005414 6.2e-22 108.6 232 39.7
vmacro23510 Vaccinium macrocarpon HOM05D004654 ORTHO05D005414 8.1e-22 108.2 222 40.5
HPP92_022519 Vanilla planifolia HOM05D004654 ORTHO05D005414 8.1e-22 108.2 212 41.0
GSVIVG01005258001 Vitis vinifera HOM05D004654 ORTHO05D005414 1.1e-21 107.8 211 39.3
Nn4g24900 Nelumbo nucifera HOM05D004654 ORTHO05D005414 1.8e-21 107.1 135 51.9
AUR62037512 Chenopodium quinoa HOM05D004654 ORTHO05D005414 3.1e-21 106.3 227 36.1
Ca_15106_v3 Cicer arietinum L. HOM05D004654 ORTHO05D005414 3.1e-21 106.3 211 39.8
COL.COLO4_00809 Corchorus olitorius HOM05D004654 ORTHO05D005414 3.1e-21 106.3 196 40.8
arahy.Tifrunner.gnm1.ann1.C1RHT9 Arachis hypogaea HOM05D004654 ORTHO05D005414 5.2e-21 105.5 174 42.0
Gohir.A12G053100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 5.2e-21 105.5 204 37.7
Actinidia17131 Actinidia chinensis HOM05D004654 ORTHO05D005414 6.9e-21 105.1 221 38.0
CANSAT78G0950 Cannabis sativa HOM05D004654 ORTHO05D005414 8.9e-21 104.8 212 40.1
MD17G1272400 Malus domestica HOM05D004654 ORTHO05D005414 8.9e-21 104.8 202 39.6
C06p39170 Brassica napus HOM05D004654 ORTHO05D005414 1.2e-20 104.4 212 40.6
Duzib138G0480 Durio zibethinus HOM05D004654 ORTHO05D005414 2.0e-20 103.6 203 39.9
Psat5g143960 Pisum sativum HOM05D004654 ORTHO05D005414 2.0e-20 103.6 222 38.7
Gorai.008G054900 Gossypium raimondii HOM05D004654 ORTHO05D005414 2.6e-20 103.2 198 38.4
TPR.G37307 Trifolium pratense HOM05D004654 ORTHO05D005414 3.4e-20 102.8 186 40.9
Hma1.2p1_0034F.1_g021540 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 5.8e-20 102.1 234 38.5
Gohir.D12G051600 Gossypium hirsutum HOM05D004654 ORTHO05D005414 7.6e-20 101.7 198 37.9
Potri.004G078500 Populus trichocarpa HOM05D004654 ORTHO05D005414 7.6e-20 101.7 206 41.3
Glyma.11G204100 Glycine max HOM05D004654 ORTHO05D005414 9.9e-20 101.3 210 38.1
Thecc.04G056200 Theobroma cacao HOM05D004654 ORTHO05D005414 2.9e-19 99.8 195 40.0
VMungo0540G1596 Vigna mungo HOM05D004654 ORTHO05D005414 2.9e-19 99.8 214 39.7
Glyma.18G046900 Glycine max HOM05D004654 ORTHO05D005414 3.8e-19 99.4 206 35.4
Gohir.A08G038100 Gossypium hirsutum HOM05D004654 ORTHO05D005414 3.8e-19 99.4 170 42.9
Phvul.006G084100 Phaseolus vulgaris HOM05D004654 ORTHO05D005414 3.8e-19 99.4 198 38.9
Sabra17G0119000 Salix brachista HOM05D004654 ORTHO05D005414 4.9e-19 99.0 218 41.7
Lj6g0008387 Lotus japonicus HOM05D004654 ORTHO05D005414 6.4e-19 98.6 203 38.4
Actinidia35698 Actinidia chinensis HOM05D004654 ORTHO05D005414 1.1e-18 97.8 217 35.5
BolC2t08298H Brassica oleracea HOM05D004654 ORTHO05D005414 1.1e-18 97.8 184 42.9
FAN28G0174 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-18 97.8 192 41.1
FAN28G0874 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.1e-18 97.8 192 41.1
Medtr3g064040 Medicago truncatula HOM05D004654 ORTHO05D005414 1.1e-18 97.8 214 39.3
FAN19G2236 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.9e-18 97.1 192 41.1
Gohir.D08G048300 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.9e-18 97.1 170 41.8
Gorai.004G047800 Gossypium raimondii HOM05D004654 ORTHO05D005414 1.9e-18 97.1 170 41.8
BcaC03g14719 Brassica carinata HOM05D004654 ORTHO05D005414 2.4e-18 96.7 213 39.9
C02p21610 Brassica napus HOM05D004654 ORTHO05D005414 2.4e-18 96.7 213 39.9
Potri.017G142100 Populus trichocarpa HOM05D004654 ORTHO05D005414 3.2e-18 96.3 201 39.8
Sed0014762 Sechium edule HOM05D004654 ORTHO05D005414 9.3e-18 94.7 205 37.6
Rhsim08G0023400 Rhododendron simsii HOM05D004654 ORTHO05D005414 1.2e-17 94.4 226 38.5
A02p13350 Brassica napus HOM05D004654 ORTHO05D005414 2.7e-17 93.2 183 39.9
BraA02t06392Z Brassica rapa HOM05D004654 ORTHO05D005414 2.7e-17 93.2 183 39.9
Sabra04G0052000 Salix brachista HOM05D004654 ORTHO05D005414 2.7e-17 93.2 198 38.9
Sc09g0004620 Simmondsia chinensis HOM05D004654 ORTHO05D005414 2.7e-17 93.2 215 37.2
ClCG05G011320 Citrullus lanatus HOM05D004654 ORTHO05D005414 4.6e-17 92.4 211 37.9
Lalb_Chr17g0345801 Lupinus albus HOM05D004654 ORTHO05D005414 6.0e-17 92.0 196 40.3
Peaxi162Scf00918g00026 Petunia axillaris HOM05D004654 ORTHO05D005414 1.3e-16 90.9 221 36.2
arahy.Tifrunner.gnm1.ann1.RSI5EI Arachis hypogaea HOM05D004654 ORTHO05D005414 1.7e-16 90.5 210 36.2
FAN26G0407 Fragaria x ananassa HOM05D004654 ORTHO05D005414 2.3e-16 90.1 193 40.4
TWI77G0610 Tripterygium wilfordii HOM05D004654 ORTHO05D005414 3.0e-16 89.7 216 38.4
Eucgr.F02926 Eucalyptus grandis HOM05D004654 ORTHO05D005414 5.1e-16 89.0 85 61.2
Dinv03197 Davidia involucrata HOM05D004654 ORTHO05D005414 6.6e-16 88.6 223 35.9
Lalb_Chr20g0117181 Lupinus albus HOM05D004654 ORTHO05D005414 1.1e-15 87.8 231 35.5
TAR374G0450 Trochodendron aralioides HOM05D004654 ORTHO05D005414 1.1e-15 87.8 93 59.1
MELO3C020251.2 Cucumis melo HOM05D004654 ORTHO05D005414 1.5e-15 87.4 88 56.8
ECA246G3021 Erigeron canadensis HOM05D004654 ORTHO05D005414 1.5e-15 87.4 225 36.0
Lsat_1_v5_gn_3_68821 Lactuca sativa HOM05D004654 ORTHO05D005414 1.5e-15 87.4 220 35.5
MD03G1273600 Malus domestica HOM05D004654 ORTHO05D005414 2.5e-15 86.7 195 34.9
CiPaw.03G260700 Carya illinoinensis HOM05D004654 ORTHO05D005414 4.3e-15 85.9 206 38.8
CsaV3_3G021140 Cucumis sativus L. HOM05D004654 ORTHO05D005414 4.3e-15 85.9 88 55.7
DCAR_002994 Daucus carota HOM05D004654 ORTHO05D005414 4.3e-15 85.9 215 36.7
Hma1.2p1_0085F.1_g044140 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 4.3e-15 85.9 240 35.4
HanXRQChr15g0485191 Helianthus annuus HOM05D004654 ORTHO05D005414 5.6e-15 85.5 222 35.6
PGR004G1881 Punica granatum HOM05D004654 ORTHO05D005414 5.6e-15 85.5 212 37.7
Cc07_g12430 Coffea canephora HOM05D004654 ORTHO05D005414 7.3e-15 85.1 223 34.1
Nitab4.5_0008713g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 1.3e-14 84.3 238 35.7
HanXRQChr16g0532651 Helianthus annuus HOM05D004654 ORTHO05D005414 2.1e-14 83.6 225 35.6
Solyc03g031950.3 Solanum lycopersicum HOM05D004654 ORTHO05D005414 2.8e-14 83.2 241 35.3
Dinv19105 Davidia involucrata HOM05D004654 ORTHO05D005414 3.6e-14 82.8 171 39.8
Hma1.2p1_2924F.1_g330430 Hydrangea macrophylla HOM05D004654 ORTHO05D005414 3.6e-14 82.8 224 37.5
Sopen03g005810 Solanum pennellii HOM05D004654 ORTHO05D005414 6.2e-14 82.0 239 35.6
EL10Ac4g08895 Beta vulgaris HOM05D004654 ORTHO05D005414 1.4e-13 80.9 98 55.1
PGSC0003DMG400024083 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.4e-13 80.9 239 35.6
FAN23G2643 Fragaria x ananassa HOM05D004654 ORTHO05D005414 1.8e-13 80.5 161 39.8
Lsat_1_v5_gn_8_113741 Lactuca sativa HOM05D004654 ORTHO05D005414 1.8e-13 80.5 231 36.8
PGSC0003DMG400037923 Solanum tuberosum HOM05D004654 ORTHO05D005414 1.8e-13 80.5 207 37.7
arahy.Tifrunner.gnm1.ann1.70EH4T Arachis hypogaea HOM05D004654 ORTHO05D005414 4.0e-13 79.3 212 33.5
Haze_14062 Corylus avellana HOM05D004654 ORTHO05D005414 5.3e-13 79.0 167 43.1
Os03g0110300 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 9.0e-13 78.2 191 36.1
arahy.Tifrunner.gnm1.ann1.6F687N Arachis hypogaea HOM05D004654 ORTHO05D005414 2.6e-12 76.6 205 34.6
Lalb_Chr10g0103991 Lupinus albus HOM05D004654 ORTHO05D005414 2.9e-11 73.2 83 53.0
Oeu034013.1 Olea europaea HOM05D004654 ORTHO05D005414 6.4e-11 72.0 209 34.0
DCAR_000947 Daucus carota HOM05D004654 ORTHO05D005414 1.1e-10 71.2 94 44.7
Gohir.A04G103050 Gossypium hirsutum HOM05D004654 ORTHO05D005414 1.1e-10 71.2 70 52.9
Lsat_1_v5_gn_2_72380 Lactuca sativa HOM05D004654 ORTHO05D005414 1.1e-10 71.2 228 32.9
DCAR_014130 Daucus carota HOM05D004654 ORTHO05D005414 4.2e-10 69.3 210 33.3
HanXRQChr15g0486441 Helianthus annuus HOM05D004654 ORTHO05D005414 5.4e-10 68.9 183 34.4
Zm00001eb000770 Zea mays HOM05D004654 ORTHO05D005414 7.1e-10 68.6 80 48.8
Oeu024775.2 Olea europaea HOM05D004654 ORTHO05D005414 9.3e-10 68.2 205 36.1
Nitab4.5_0003016g0040 Nicotiana tabacum HOM05D004654 ORTHO05D005414 2.1e-09 67.0 221 33.9
Os10g0483900 Oryza sativa ssp. japonica HOM05D004654 ORTHO05D005414 2.1e-09 67.0 221 30.8
BcaB03g15322 Brassica carinata HOM05D004654 ORTHO05D005414 3.5e-09 66.2 64 56.2
SalBow6G0287 Salvia bowleyana HOM05D004654 ORTHO05D005414 4.6e-09 65.9 210 35.2
Migut.D00607 Erythranthe guttata HOM05D004654 ORTHO05D005414 6.0e-09 65.5 95 49.5
SGA_v2.0_scaffold247G44889 Striga asiatica HOM05D004654 ORTHO05D005414 2.3e-08 63.5 45 68.9
unitig_578.g16656 Utricularia gibba HOM05D004654 ORTHO05D005414 2.3e-08 63.5 77 45.5
Zm00001eb221440 Zea mays HOM05D004654 ORTHO05D005414 5.1e-08 62.4 109 37.6
SGA_v2.0_scaffold8G04582 Striga asiatica HOM05D004654 ORTHO05D005414 6.7e-08 62.0 232 33.2
Zm00001eb045470 Zea mays HOM05D004654 ORTHO05D005414 1.5e-07 60.8 192 29.2
unitig_85.g27201 Utricularia gibba HOM05D004654 ORTHO05D005414 4.3e-07 59.3 74 44.6
unitig_90.g27472 Utricularia gibba HOM05D004654 ORTHO05D005414 4.3e-07 59.3 178 34.8
Nitab4.5_0000235g0010 Nicotiana tabacum HOM05D004654 ORTHO05D005414 7.4e-07 58.5 224 32.6
SEGI_17362 Sequoiadendron giganteum HOM05D004654 ORTHO05D005414 4.8e-06 55.8 206 26.2


User provided reference genes

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