Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3387 Papaver somniferum HOM05D000522 ORTHO05D303083 4.0e-133 478.0 230 100.0
PSO063G3875 Papaver somniferum HOM05D000522 ORTHO05D004380 1.2e-15 87.8 220 35.0
PSO782G3947 Papaver somniferum HOM05D000522 ORTHO05D004380 3.4e-15 86.3 220 34.1
Cpa.g.sc23.137 Carica papaya HOM05D000522 ORTHO05D004380 1.3e-14 84.3 246 31.3
MBI04_g25412_MAGBIO Magnolia biondii HOM05D000522 ORTHO05D004380 4.9e-14 82.4 246 30.9
QL02p086017 Quercus lobata HOM05D000522 ORTHO05D004380 1.1e-13 81.3 224 30.4
Os06g0594100 Oryza sativa ssp. japonica HOM05D000522 ORTHO05D004380 1.9e-13 80.5 231 29.0
ATR0037G022 Amborella trichopoda HOM05D000522 ORTHO05D004380 4.2e-13 79.3 224 31.7
CiPaw.04G167000 Carya illinoinensis HOM05D000522 ORTHO05D004380 4.2e-13 79.3 240 29.6
Cfa003289 Carpinus fangiana HOM05D000522 ORTHO05D004380 5.4e-13 79.0 230 30.0
CDE02G2108 Ceratophyllum demersum HOM05D000522 ORTHO05D004380 5.4e-13 79.0 241 29.0
Gohir.D07G004100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 5.4e-13 79.0 230 29.1
Gorai.001G003700 Gossypium raimondii HOM05D000522 ORTHO05D004380 5.4e-13 79.0 230 29.1
Sed0002571 Sechium edule HOM05D000522 ORTHO05D004380 5.4e-13 79.0 224 30.4
unitig_46.g18395 Utricularia gibba HOM05D000522 ORTHO05D004380 7.1e-13 78.6 240 29.2
Potri.006G155700 Populus trichocarpa HOM05D000522 ORTHO05D004380 1.2e-12 77.8 219 30.6
Gohir.A07G003600 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.6e-12 77.4 230 28.7
Peaxi162Scf00560g00617 Petunia axillaris HOM05D000522 ORTHO05D004380 1.6e-12 77.4 245 29.8
Lj7A644G12 Lonicera japonica HOM05D000522 ORTHO05D004380 2.1e-12 77.0 213 30.5
Potri.006G156350 Populus trichocarpa HOM05D000522 ORTHO05D004380 2.1e-12 77.0 219 30.6
Atru.chr7.1299 Acer truncatum HOM05D000522 ORTHO05D004380 2.7e-12 76.6 240 29.2
AT4G13360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 4.6e-12 75.9 224 29.5
MSTRG.26353 Avicennia marina HOM05D000522 ORTHO05D004380 6.0e-12 75.5 224 28.6
CANSAT56G3220 Cannabis sativa HOM05D000522 ORTHO05D004380 6.0e-12 75.5 224 28.1
CANSAT56G3667 Cannabis sativa HOM05D000522 ORTHO05D004380 6.0e-12 75.5 224 28.1
Carub.0007s2921 Capsella rubella HOM05D000522 ORTHO05D004380 6.0e-12 75.5 240 29.6
Cc06_g09360 Coffea canephora HOM05D000522 ORTHO05D004380 7.9e-12 75.1 230 29.6
Haze_25684 Corylus avellana HOM05D000522 ORTHO05D004380 7.9e-12 75.1 246 29.7
PSO210G0429 Papaver somniferum HOM05D000522 ORTHO05D004380 7.9e-12 75.1 213 30.5
Actinidia07420 Actinidia chinensis HOM05D000522 ORTHO05D004380 1.0e-11 74.7 187 31.6
Aqoxy7G03774 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 1.0e-11 74.7 216 28.7
Duzib187G0776 Durio zibethinus HOM05D000522 ORTHO05D004380 1.0e-11 74.7 224 29.5
PGR102G1361 Punica granatum HOM05D000522 ORTHO05D004380 1.0e-11 74.7 221 29.4
Solyc05g018417.1 Solanum lycopersicum HOM05D000522 ORTHO05D004380 1.0e-11 74.7 240 30.4
Zm00001eb385980 Zea mays HOM05D000522 ORTHO05D004380 1.0e-11 74.7 216 28.2
DCAR_012089 Daucus carota HOM05D000522 ORTHO05D004380 1.8e-11 73.9 224 28.1
Sp7g10940 Schrenkiella parvula HOM05D000522 ORTHO05D004380 1.8e-11 73.9 224 29.0
Hund09185 Selenicereus undatus HOM05D000522 ORTHO05D004380 1.8e-11 73.9 226 29.6
Aa31LG9G4380 Aethionema arabicum HOM05D000522 ORTHO05D004380 2.3e-11 73.6 218 30.7
BcaB03g16093 Brassica carinata HOM05D000522 ORTHO05D004380 2.3e-11 73.6 224 29.9
CsaV3_2G002430 Cucumis sativus L. HOM05D000522 ORTHO05D004380 2.3e-11 73.6 228 29.4
Dinv41579 Davidia involucrata HOM05D000993 ORTHO05D004380 2.3e-11 73.6 224 28.1
Solyc05g018410.3 Solanum lycopersicum HOM05D000522 ORTHO05D004380 2.3e-11 73.6 240 30.0
Manes.03G069100 Manihot esculenta HOM05D000522 ORTHO05D004380 3.0e-11 73.2 213 30.0
Aa31LG8G11100 Aethionema arabicum HOM05D000522 ORTHO05D004380 3.9e-11 72.8 215 30.2
Nn8g39261 Nelumbo nucifera HOM05D000522 ORTHO05D004380 3.9e-11 72.8 225 30.2
CAN.G32.1 Capsicum annuum HOM05D000522 ORTHO05D004380 5.1e-11 72.4 214 31.8
FAN23G2543 Fragaria x ananassa HOM05D005850 ORTHO05D007405 5.1e-11 72.4 217 28.6
CAN.G300.3 Capsicum annuum HOM05D000522 ORTHO05D004380 6.7e-11 72.0 240 28.8
Duzib168G0832 Durio zibethinus HOM05D000522 ORTHO05D004380 6.7e-11 72.0 216 28.2
HanXRQChr10g0317741 Helianthus annuus HOM05D000522 ORTHO05D004380 1.1e-10 71.2 246 27.6
SalBow1G3152 Salvia bowleyana HOM05D000522 ORTHO05D004380 1.1e-10 71.2 224 29.0
Migut.K00465 Erythranthe guttata HOM05D000522 ORTHO05D004380 1.5e-10 70.9 214 29.4
FAN26G0510 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-10 70.9 217 28.1
FAN26G3074 Fragaria x ananassa HOM05D005850 ORTHO05D007405 1.5e-10 70.9 217 28.1
Glyma.05G232600 Glycine max HOM05D000522 ORTHO05D004380 1.5e-10 70.9 240 29.2
Gohir.A13G196800 Gossypium hirsutum HOM05D000522 ORTHO05D004380 1.5e-10 70.9 217 28.6
Eucgr.C04134 Eucalyptus grandis HOM05D000522 ORTHO05D004380 1.9e-10 70.5 226 28.8
FAN28G2217 Fragaria x ananassa HOM05D000522 ORTHO05D004380 1.9e-10 70.5 217 28.1
Thecc.09G114500 Theobroma cacao HOM05D000522 ORTHO05D004380 1.9e-10 70.5 230 28.7
Ciclev10008327m.g Citrus clementina HOM05D000522 ORTHO05D004380 2.5e-10 70.1 241 28.6
Lj4g0021382 Lotus japonicus HOM05D000522 ORTHO05D004380 2.5e-10 70.1 213 29.1
Nitab4.5_0008529g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.5e-10 70.1 214 29.9
Nitab4.5_0008625g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 2.5e-10 70.1 213 30.5
Sopen05g015250 Solanum pennellii HOM05D000522 ORTHO05D004380 2.5e-10 70.1 213 30.5
SGA_v2.0_scaffold183G39892 Striga asiatica HOM05D000522 ORTHO05D004380 2.5e-10 70.1 255 28.6
MELO3C004545.2 Cucumis melo HOM05D000522 ORTHO05D004380 3.3e-10 69.7 231 27.7
Nitab4.5_0002705g0010 Nicotiana tabacum HOM05D000522 ORTHO05D004380 3.3e-10 69.7 213 29.1
Rhsim03G0244700 Rhododendron simsii HOM05D000522 ORTHO05D004380 4.3e-10 69.3 240 27.1
Sabra06G0123500 Salix brachista HOM05D000522 ORTHO05D004380 4.3e-10 69.3 213 30.0
HPP92_006445 Vanilla planifolia HOM05D000522 ORTHO05D004380 4.3e-10 69.3 214 29.0
Ca_17345_v3 Cicer arietinum L. HOM05D000522 ORTHO05D004380 5.6e-10 68.9 213 29.1
Eucgr.C01076 Eucalyptus grandis HOM05D000522 ORTHO05D004380 5.6e-10 68.9 224 27.7
COL.COLO4_34881 Corchorus olitorius HOM05D000522 ORTHO05D004380 7.4e-10 68.6 224 27.2
ECA236G2754 Erigeron canadensis HOM05D000522 ORTHO05D004380 7.4e-10 68.6 220 27.7
FvH4_1g05350 Fragaria vesca HOM05D000522 ORTHO05D004380 7.4e-10 68.6 217 27.6
FAN19G1578 Fragaria x ananassa HOM05D005850 ORTHO05D007405 7.4e-10 68.6 217 27.6
Peaxi162Scf00552g00512 Petunia axillaris HOM05D000522 ORTHO05D004380 7.4e-10 68.6 206 29.6
GSVIVG01015428001 Vitis vinifera HOM05D000522 ORTHO05D004380 7.4e-10 68.6 224 29.5
AL9U10300 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
BcaC02g09431 Brassica carinata HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
A04p08740 Brassica napus HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
C04p42550 Brassica napus HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
BolC4t25830H Brassica oleracea HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
BraA04t16571Z Brassica rapa HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
CARHR218930 Cardamine hirsuta HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
Thhalv10025298m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 63.5
MD02G1056500 Malus domestica HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 61.5
MD15G1189500 Malus domestica HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 61.5
Nn2g11819 Nelumbo nucifera HOM05D000522 ORTHO05D004380 9.6e-10 68.2 52 61.5
Sed0015283 Sechium edule HOM05D000522 ORTHO05D004380 9.6e-10 68.2 226 27.9
Sp3g22170 Schrenkiella parvula HOM05D000522 ORTHO05D004380 1.3e-09 67.8 52 61.5
CSS0032661 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.6e-09 67.4 210 28.6
Glyma.08G040000 Glycine max HOM05D000522 ORTHO05D004380 1.6e-09 67.4 181 32.0
Psat7g012360 Pisum sativum HOM05D000522 ORTHO05D004380 1.6e-09 67.4 240 27.9
Aqoxy7G01827 Aquilegia oxysepala HOM05D000522 ORTHO05D004380 2.8e-09 66.6 52 63.5
Lj7C643G7 Lonicera japonica HOM05D000522 ORTHO05D004380 2.8e-09 66.6 210 29.0
Mapoly0126s0026 Marchantia polymorpha HOM05D000522 ORTHO05D004380 2.8e-09 66.6 52 61.5
arahy.Tifrunner.gnm1.ann1.E6IMKI Arachis hypogaea HOM05D000522 ORTHO05D004380 3.7e-09 66.2 216 29.2
Duzib150G0749 Durio zibethinus HOM05D000522 ORTHO05D004380 3.7e-09 66.2 52 57.7
Thhalv10002535m.g Eutrema salsugineum HOM05D000522 ORTHO05D004380 3.7e-09 66.2 52 59.6
Lsat_1_v5_gn_5_100220 Lactuca sativa HOM05D000522 ORTHO05D004380 4.8e-09 65.9 226 28.3
Prupe.7G227300 Prunus persica HOM05D000522 ORTHO05D004380 4.8e-09 65.9 52 59.6
RcHm_v2.0_Chr2g0091031 Rosa chinensis HOM05D000522 ORTHO05D004380 4.8e-09 65.9 52 57.7
AL3G39830 Arabidopsis lyrata HOM05D000522 ORTHO05D004380 6.2e-09 65.5 52 61.5
Gohir.D13G202100 Gossypium hirsutum HOM05D000522 ORTHO05D004380 6.2e-09 65.5 52 57.7
Gorai.013G231000 Gossypium raimondii HOM05D000522 ORTHO05D004380 6.2e-09 65.5 52 57.7
Pp3c14_25790 Physcomitrium patens HOM05D000522 ORTHO05D004380 6.2e-09 65.5 96 38.5
Sopen07g011860 Solanum pennellii HOM05D000522 ORTHO05D004380 8.1e-09 65.1 52 61.5
Nitab4.5_0002363g0030 Nicotiana tabacum HOM05D000522 ORTHO05D004380 1.1e-08 64.7 52 61.5
TWI63G0481 Tripterygium wilfordii HOM05D000522 ORTHO05D004380 1.1e-08 64.7 52 57.7
AT3G24360 Arabidopsis thaliana HOM05D000522 ORTHO05D004380 1.4e-08 64.3 52 59.6
Lsat_1_v5_gn_8_94761 Lactuca sativa HOM05D000522 ORTHO05D004380 1.4e-08 64.3 219 26.5
Sc08g0007180 Simmondsia chinensis HOM05D000522 ORTHO05D004380 1.4e-08 64.3 52 59.6
THA.LOC104808747 Tarenaya hassleriana HOM05D000522 ORTHO05D004380 1.4e-08 64.3 51 58.8
TAR383G0974 Trochodendron aralioides HOM05D000522 ORTHO05D004380 1.4e-08 64.3 213 29.6
CARHR100460 Cardamine hirsuta HOM05D000522 ORTHO05D004380 1.8e-08 63.9 52 59.6
BcaB03g14587 Brassica carinata HOM05D000522 ORTHO05D004380 2.4e-08 63.5 52 57.7
Carub.0003s2470 Capsella rubella HOM05D000522 ORTHO05D004380 2.4e-08 63.5 52 59.6
Lalb_Chr05g0222651 Lupinus albus HOM05D000522 ORTHO05D004380 2.4e-08 63.5 52 57.7
Medtr8g103840 Medicago truncatula HOM05D000522 ORTHO05D004380 2.4e-08 63.5 52 55.8
EL10Ac8g18536 Beta vulgaris HOM05D000522 ORTHO05D004380 3.1e-08 63.2 52 57.7
VMungo0251G1337 Vigna mungo HOM05D000522 ORTHO05D004380 3.1e-08 63.2 52 55.8
AUR62011027 Chenopodium quinoa HOM05D000522 ORTHO05D004380 4.0e-08 62.8 52 55.8
AUR62033399 Chenopodium quinoa HOM05D000522 ORTHO05D004380 4.0e-08 62.8 52 55.8
ClCG11G002610 Citrullus lanatus HOM05D000522 ORTHO05D004380 4.0e-08 62.8 52 57.7
Actinidia20339 Actinidia chinensis HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
arahy.Tifrunner.gnm1.ann1.R702JB Arachis hypogaea HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
BcaC01g03316 Brassica carinata HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
A03p43630 Brassica napus HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
C03p53740 Brassica napus HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
BolC3t17634H Brassica oleracea HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
BraA03t13500Z Brassica rapa HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
Lalb_Chr16g0387971 Lupinus albus HOM05D000522 ORTHO05D004380 5.3e-08 62.4 52 55.8
Ah.09g227710 Amaranthus hybridus HOM05D000522 ORTHO05D004380 6.9e-08 62.0 52 57.7
Phvul.002G314900 Phaseolus vulgaris HOM05D000522 ORTHO05D004380 6.9e-08 62.0 52 53.8
TPR.G21700 Trifolium pratense HOM05D000522 ORTHO05D004380 6.9e-08 62.0 52 53.8
CSS0022610 Camellia sinensis var. sinensis HOM05D000522 ORTHO05D004380 1.2e-07 61.2 52 55.8
HanXRQChr05g0138321 Helianthus annuus HOM05D000522 ORTHO05D004380 1.2e-07 61.2 52 53.8
Pp3c2_2910 Physcomitrium patens HOM05D000522 ORTHO05D004380 1.5e-07 60.8 52 53.8
Psat7g014120 Pisum sativum HOM05D000522 ORTHO05D004380 2.0e-07 60.5 52 51.9
AUR62033413 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.6e-07 60.1 52 57.7
SMO147G0048 Selaginella moellendorffii HOM05D000522 ORTHO05D004380 2.6e-07 60.1 52 53.8
ECA234G1779 Erigeron canadensis HOM05D000522 ORTHO05D004380 5.8e-07 58.9 52 53.8
A01p12550 Brassica napus HOM05D000522 ORTHO05D004380 7.6e-07 58.5 57 52.6
A03p21310 Brassica napus HOM05D000522 ORTHO05D004380 7.6e-07 58.5 57 52.6
BraA03t11366Z Brassica rapa HOM05D000522 ORTHO05D004380 7.6e-07 58.5 57 52.6
vmacro06199 Vaccinium macrocarpon HOM05D000522 ORTHO05D004380 1.3e-06 57.8 264 25.4
Hund26120 Selenicereus undatus HOM05D000522 ORTHO05D004380 2.2e-06 57.0 52 50.0
AUR62011039 Chenopodium quinoa HOM05D000522 ORTHO05D004380 2.9e-06 56.6 51 54.9
AagrBONN_evm.TU.Sc2ySwM_340.302 Anthoceros agrestis HOM05D000522 ORTHO05D004380 4.9e-06 55.8 52 46.2
BolC9t53289H Brassica oleracea HOM05D000522 ORTHO05D004380 6.4e-06 55.5 55 52.7


User provided reference genes

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