Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3368 Papaver somniferum HOM05D005457 ORTHO05D006350 0.0e+00 1761.5 1052 100.0
PSO170G6745 Papaver somniferum HOM05D005457 ORTHO05D006350 0.0e+00 1612.0 1052 91.6
Nn2g11331 Nelumbo nucifera HOM05D005457 ORTHO05D006350 4.4e-126 456.8 1679 36.3
Gorai.003G125700 Gossypium raimondii HOM05D005457 ORTHO05D006350 1.7e-125 454.9 1368 39.0
Nn2g13569 Nelumbo nucifera HOM05D005457 ORTHO05D006350 6.3e-125 453.0 1739 33.9
Gohir.D03G119400 Gossypium hirsutum HOM05D005457 ORTHO05D006350 2.0e-123 448.0 1376 39.5
Dinv34321 Davidia involucrata HOM05D005457 ORTHO05D006350 1.1e-121 442.2 1682 34.8
Prupe.6G064800 Prunus persica HOM05D005457 ORTHO05D006350 9.5e-121 439.1 1403 34.4
Manes.02G123500 Manihot esculenta HOM05D005457 ORTHO05D006350 6.4e-117 426.4 1455 35.8
Ciclev10027683m.g Citrus clementina HOM05D005457 ORTHO05D006350 9.5e-113 412.5 1465 35.2
Atru.chr3.4038 Acer truncatum HOM05D005457 ORTHO05D006350 1.6e-112 411.8 1462 36.5
MD11G1084500 Malus domestica HOM05D005457 ORTHO05D006350 8.0e-112 409.5 1322 34.8
QL01p028955 Quercus lobata HOM05D005457 ORTHO05D006350 5.8e-110 403.3 1481 33.4
Gorai.003G125900 Gossypium raimondii HOM05D005457 ORTHO05D006350 2.9e-109 401.0 1382 34.4
Gohir.D03G119500 Gossypium hirsutum HOM05D005457 ORTHO05D006350 6.4e-109 399.8 1355 35.1
Aqoxy1G00759 Aquilegia oxysepala HOM05D005457 ORTHO05D006350 1.4e-108 398.7 1519 36.9
Potri.001G247100 Populus trichocarpa HOM05D005457 ORTHO05D006350 1.7e-106 391.7 1390 33.6
vmacro03007 Vaccinium macrocarpon HOM05D005457 ORTHO05D006350 3.9e-106 390.6 1521 35.0
Gohir.A03G047600 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.9e-105 388.3 1360 33.8
Dinv17076 Davidia involucrata HOM05D005457 ORTHO05D006350 1.6e-104 385.2 1589 33.1
Dinv43020 Davidia involucrata HOM05D005457 ORTHO05D006350 1.6e-104 385.2 1589 33.1
Dinv43077 Davidia involucrata HOM05D005457 ORTHO05D006350 1.6e-104 385.2 1589 33.1
Hma1.2p1_0543F.1_g175290 Hydrangea macrophylla HOM05D005457 ORTHO05D006350 2.1e-104 384.8 1533 33.5
MD03G1079900 Malus domestica HOM05D005457 ORTHO05D006350 8.1e-104 382.9 1345 34.4
Sabra09G0028400 Salix brachista HOM05D005457 ORTHO05D006350 4.0e-103 380.6 1339 34.7
Thecc.09G309000 Theobroma cacao HOM05D005457 ORTHO05D006350 4.0e-103 380.6 1467 35.5
Gohir.A03G047700 Gossypium hirsutum HOM05D005457 ORTHO05D006350 1.9e-100 371.7 1367 37.2
Haze_24232 Corylus avellana HOM05D005457 ORTHO05D006350 4.1e-100 370.5 1576 32.5
Lj1C143T9 Lonicera japonica HOM05D005457 ORTHO05D006350 4.6e-99 367.1 1446 33.8
FvH4_3g37470 Fragaria vesca HOM05D005457 ORTHO05D006350 7.8e-99 366.3 1411 31.7
arahy.Tifrunner.gnm1.ann1.L17SH6 Arachis hypogaea HOM05D005457 ORTHO05D006350 6.6e-98 363.2 1369 37.5
CSS0049881 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 8.6e-98 362.8 743 47.6
FAN21G0431 Fragaria x ananassa HOM05D005457 ORTHO05D006350 2.8e-96 357.8 1416 32.4
FAN11G1716 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.6e-96 357.5 1430 32.0
FAN25G1264 Fragaria x ananassa HOM05D005457 ORTHO05D006350 3.6e-96 357.5 1429 31.4
TAR369G0749 Trochodendron aralioides HOM05D005457 ORTHO05D006350 2.4e-95 354.8 1773 32.7
arahy.Tifrunner.gnm1.ann1.U9UY67 Arachis hypogaea HOM05D005457 ORTHO05D006350 4.0e-95 354.0 1351 36.6
Psat7g154880 Pisum sativum HOM05D005457 ORTHO05D006350 3.4e-94 350.9 1287 36.4
CAN.G1002.16 Capsicum annuum HOM05D005457 ORTHO05D006350 5.8e-94 350.1 1305 36.5
ClCG03G001030 Citrullus lanatus HOM05D005457 ORTHO05D006350 1.7e-93 348.6 1566 32.5
Rhsim13G0075000 Rhododendron simsii HOM05D005457 ORTHO05D006350 2.4e-92 344.7 1499 34.9
Phvul.011G009900 Phaseolus vulgaris HOM05D005457 ORTHO05D006350 4.2e-92 344.0 1384 33.2
CiPaw.13G084000 Carya illinoinensis HOM05D005457 ORTHO05D006350 9.3e-92 342.8 1514 33.0
Lalb_Chr01g0000381 Lupinus albus HOM05D005457 ORTHO05D006350 2.7e-91 341.3 1294 36.1
Lsat_1_v5_gn_9_25441 Lactuca sativa HOM05D005457 ORTHO05D006350 6.6e-90 336.7 1330 35.0
TAR623G1178 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.6e-90 336.7 231 73.2
FAN16G3594 Fragaria x ananassa HOM05D005457 ORTHO05D006350 8.7e-90 336.3 1429 33.0
Sc12g0001060 Simmondsia chinensis HOM05D005457 ORTHO05D006350 1.1e-89 335.9 1457 33.8
Lj3g0007084 Lotus japonicus HOM05D005457 ORTHO05D006350 6.2e-88 330.1 1326 36.1
AUR62001711 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.4e-86 324.3 1312 35.3
Peaxi162Scf00433g00116 Petunia axillaris HOM05D005457 ORTHO05D006350 3.4e-86 324.3 1402 31.7
Sopen09g014590 Solanum pennellii HOM05D005457 ORTHO05D006350 4.4e-86 323.9 1405 31.5
CsaV3_1G035890 Cucumis sativus L. HOM05D005457 ORTHO05D006350 2.9e-85 321.2 1570 34.1
RcHm_v2.0_Chr5g0067371 Rosa chinensis HOM05D005457 ORTHO05D006350 4.9e-85 320.5 713 47.5
ECA247G2917 Erigeron canadensis HOM05D005457 ORTHO05D006350 8.4e-85 319.7 1291 32.1
Solyc09g031650.3 Solanum lycopersicum HOM05D005457 ORTHO05D006350 1.1e-84 319.3 1401 32.9
EL10Ac7g16099 Beta vulgaris HOM05D005457 ORTHO05D006350 1.9e-84 318.5 1497 32.4
Ca_19579_v3 Cicer arietinum L. HOM05D005457 ORTHO05D006350 3.2e-84 317.8 1324 36.6
Glyma.12G007800 Glycine max HOM05D005457 ORTHO05D006350 9.3e-84 316.2 1351 35.8
VMungo1127G1417 Vigna mungo HOM05D005457 ORTHO05D006350 9.3e-84 316.2 1381 33.9
HanXRQChr08g0237081 Helianthus annuus HOM05D005457 ORTHO05D006350 2.5e-81 308.1 1359 32.4
Sed0019872 Sechium edule HOM05D005457 ORTHO05D006350 1.6e-80 305.4 1465 32.9
DCAR_027735 Daucus carota HOM05D005457 ORTHO05D006350 5.3e-79 300.4 1270 31.6
Migut.N00905 Erythranthe guttata HOM05D005457 ORTHO05D006350 2.0e-78 298.5 1227 34.2
Cpa.g.sc112.89 Carica papaya HOM05D005457 ORTHO05D006350 3.4e-78 297.7 250 65.2
TPR.G3642 Trifolium pratense HOM05D005457 ORTHO05D006350 5.8e-78 297.0 1299 33.6
Ah.14g082630 Amaranthus hybridus HOM05D005457 ORTHO05D006350 2.9e-77 294.7 1453 34.3
SHI05894 Sapria himalayana HOM05D005457 ORTHO05D006350 1.4e-76 292.4 1444 30.6
GSVIVG01024823001 Vitis vinifera HOM05D005457 ORTHO05D006350 3.2e-76 291.2 1692 31.0
COL.COLO4_19073 Corchorus olitorius HOM05D005457 ORTHO05D006350 4.6e-75 287.3 1020 31.5
Lj2C1073G13 Lonicera japonica HOM05D005457 ORTHO05D006350 1.0e-74 286.2 277 60.3
DCAR_027737 Daucus carota HOM05D005457 ORTHO05D006350 1.5e-73 282.3 1217 31.1
Nitab4.5_0006476g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 1.3e-72 279.3 735 37.8
Nitab4.5_0000752g0010 Nicotiana tabacum HOM05D005457 ORTHO05D006350 3.1e-71 274.6 724 39.4
Cc00_g21960 Coffea canephora HOM05D005457 ORTHO05D006350 2.6e-70 271.6 1430 32.2
HPP92_001490 Vanilla planifolia HOM05D005457 ORTHO05D006350 1.7e-69 268.9 245 59.2
THA.LOC104799410 Tarenaya hassleriana HOM05D005457 ORTHO05D006350 4.9e-69 267.3 1207 33.3
ATR0618G328 Amborella trichopoda HOM05D005457 ORTHO05D006350 8.4e-69 266.5 1620 31.2
SalBow2G3533 Salvia bowleyana HOM05D005457 ORTHO05D006350 1.4e-68 265.8 1324 32.5
Zm00001eb159160 Zea mays HOM05D005457 ORTHO05D006350 1.4e-68 265.8 173 71.7
Hund11609 Selenicereus undatus HOM05D005457 ORTHO05D006350 7.1e-68 263.5 1490 33.2
Glyma.09G228800 Glycine max HOM05D005457 ORTHO05D006350 9.3e-68 263.1 1360 34.1
SGA_v2.0_scaffold199G41161 Striga asiatica HOM05D005457 ORTHO05D006350 4.6e-67 260.8 1310 33.7
Medtr4g037575 Medicago truncatula HOM05D005457 ORTHO05D006350 1.3e-64 252.7 1298 33.2
Zm00001eb358910 Zea mays HOM05D005457 ORTHO05D006350 1.6e-64 252.3 1185 31.5
MBI14_g32924_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 4.8e-64 250.8 140 81.4
DCAR_027739 Daucus carota HOM05D005457 ORTHO05D006350 1.5e-57 229.2 752 34.4
MBI14_g32923_MAGBIO Magnolia biondii HOM05D005457 ORTHO05D006350 6.3e-56 223.8 640 35.8
TAR623G1322 Trochodendron aralioides HOM05D005457 ORTHO05D006350 6.9e-55 220.3 476 43.1
A03p11920 Brassica napus HOM05D005457 ORTHO05D006350 7.4e-49 200.3 146 62.3
Actinidia25125 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.1e-47 194.9 102 85.3
Potri.009G040500 Populus trichocarpa HOM05D005457 ORTHO05D006350 2.0e-46 192.2 979 27.0
CDE09G0137 Ceratophyllum demersum HOM05D000076 ORTHO05D001377 3.4e-46 191.4 103 77.7
BolC3t13849H Brassica oleracea HOM05D005457 ORTHO05D006350 5.9e-46 190.7 168 56.5
Psat5g196760 Pisum sativum HOM05D005457 ORTHO05D002728 1.9e-44 185.7 175 59.4
RcHm_v2.0_Chr5g0067361 Rosa chinensis HOM05D005457 ORTHO05D006350 8.8e-42 176.8 367 39.5
Manes.01G166000 Manihot esculenta HOM05D005457 ORTHO05D006350 2.8e-40 171.8 594 32.7
AUR62020069 Chenopodium quinoa HOM05D005457 ORTHO05D006350 3.7e-40 171.4 403 37.2
SEGI_21152 Sequoiadendron giganteum HOM05D005457 ORTHO05D006350 2.4e-39 168.7 183 51.4
BcaB08g36300 Brassica carinata HOM05D012589 ORTHO05D006350 1.3e-37 162.9 167 49.1
BcaB01g04624 Brassica carinata HOM05D005457 ORTHO05D006350 1.0e-34 153.3 110 62.7
CSS0006949 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.4e-34 152.9 619 32.3
BraA03t10504Z Brassica rapa HOM05D005457 ORTHO05D006350 1.8e-34 152.5 162 49.4
CSS0035455 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 9.7e-33 146.7 664 31.6
CSS0043795 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.7e-32 146.0 77 83.1
CSS0046602 Camellia sinensis var. sinensis HOM05D005457 ORTHO05D006350 1.7e-32 146.0 77 83.1
MELO3C020581.2 Cucumis melo HOM05D005457 ORTHO05D006350 2.4e-31 142.1 704 31.4
Actinidia25123 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.1e-31 141.7 686 29.9
Eucgr.B02283 Eucalyptus grandis HOM05D005457 ORTHO05D006350 5.0e-29 134.4 640 28.9
Lj2A1073T53 Lonicera japonica HOM05D005457 ORTHO05D006350 4.2e-28 131.3 637 30.8
Oeu002456.1 Olea europaea HOM05D005457 ORTHO05D006350 1.6e-27 129.4 718 34.0
CDE02G3816 Ceratophyllum demersum HOM05D034644 ORTHO05D006350 3.6e-27 128.3 653 28.6
CDE09G0768 Ceratophyllum demersum HOM05D005457 ORTHO05D006350 3.4e-25 121.7 118 55.1
PGSC0003DMG400006701 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.7e-24 119.4 353 35.7
Cpa.g.sc112.91 Carica papaya HOM05D005457 ORTHO05D006350 6.3e-24 117.5 116 56.0
Oeu017421.1 Olea europaea HOM05D005457 ORTHO05D006350 8.5e-21 107.1 318 32.1
Actinidia08559 Actinidia chinensis HOM05D005457 ORTHO05D006350 3.2e-20 105.1 94 58.5
Actinidia08557 Actinidia chinensis HOM05D005457 ORTHO05D006350 6.1e-19 100.9 484 28.5
TAR623G0390 Trochodendron aralioides HOM05D005457 ORTHO05D006350 9.8e-17 93.6 252 35.7
Prupe.6G064700 Prunus persica HOM05D005457 ORTHO05D006350 1.6e-14 86.3 552 32.2
Os12g0155300 Oryza sativa ssp. japonica HOM05D005457 ORTHO05D006350 2.0e-14 85.9 358 27.1
CBR_g34581 Chara braunii HOM05D005457 ORTHO05D006350 3.5e-14 85.1 131 32.8
CBR_g29779 Chara braunii HOM05D005457 ORTHO05D006350 7.7e-14 84.0 197 26.4
CBR_g49555 Chara braunii HOM05D005457 ORTHO05D006350 7.7e-14 84.0 140 26.4
CBR_g34582 Chara braunii HOM05D005457 ORTHO05D006350 3.8e-13 81.6 115 33.0
CBR_g44392 Chara braunii HOM05D005457 ORTHO05D006350 1.5e-12 79.7 114 33.3
Duzib170G0589 Durio zibethinus HOM05D005457 ORTHO05D006350 1.5e-12 79.7 281 31.0
CBR_g34583 Chara braunii HOM05D005457 ORTHO05D006350 4.3e-12 78.2 114 32.5
unitig_27.g24807 Utricularia gibba HOM05D005457 ORTHO05D006350 9.5e-12 77.0 165 35.2
unitig_27.g24810 Utricularia gibba HOM05D005457 ORTHO05D006350 2.3e-10 72.4 54 61.1
Duzib170G0080 Durio zibethinus HOM05D005457 ORTHO05D006350 6.8e-10 70.9 249 35.7
Cpa.g.sc112.90 Carica papaya HOM05D005457 ORTHO05D006350 1.5e-09 69.7 437 27.5
Nn2g14614 Nelumbo nucifera HOM05D005457 ORTHO05D006350 1.1e-07 63.5 92 45.7
PGSC0003DMG400009632 Solanum tuberosum HOM05D005457 ORTHO05D006350 1.2e-06 60.1 43 62.8


User provided reference genes

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