Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3258 Papaver somniferum HOM05D005662 ORTHO05D007004 6.8e-125 450.7 226 100.0
PSO478G4436 Papaver somniferum HOM05D005662 ORTHO05D007004 6.3e-123 444.1 226 98.7
Nn4g26371 Nelumbo nucifera HOM05D005662 ORTHO05D007004 1.1e-74 283.9 232 62.5
Dinv22971 Davidia involucrata HOM05D005662 ORTHO05D007004 2.4e-74 282.7 231 60.6
MBI12_g31644_MAGBIO Magnolia biondii HOM05D005662 ORTHO05D007004 3.5e-73 278.9 229 59.8
Ciclev10005797m.g Citrus clementina HOM05D005662 ORTHO05D007004 2.3e-72 276.2 230 61.3
CiPaw.03G096300 Carya illinoinensis HOM05D005662 ORTHO05D007004 3.0e-72 275.8 228 61.8
TAR374G0299 Trochodendron aralioides HOM05D005662 ORTHO05D007004 8.7e-72 274.2 233 62.2
CSS0015308 Camellia sinensis var. sinensis HOM05D005662 ORTHO05D007004 2.5e-71 272.7 230 61.3
Hma1.2p1_0654F.1_g196460 Hydrangea macrophylla HOM05D005662 ORTHO05D007004 2.5e-71 272.7 229 60.7
TAR375G0912 Trochodendron aralioides HOM05D005662 ORTHO05D007004 2.5e-71 272.7 222 61.7
QL09p018886 Quercus lobata HOM05D005662 ORTHO05D007004 1.3e-70 270.4 231 60.6
Atru.chr1.651 Acer truncatum HOM05D005662 ORTHO05D007004 6.2e-70 268.1 231 61.0
TWI39G1176 Tripterygium wilfordii HOM05D005662 ORTHO05D007004 6.2e-70 268.1 225 61.8
GSVIVG01018540001 Vitis vinifera HOM05D005662 ORTHO05D007004 6.2e-70 268.1 228 58.8
Prupe.2G281200 Prunus persica HOM05D005662 ORTHO05D007004 8.1e-70 267.7 227 62.1
Actinidia25029 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.4e-69 266.9 234 59.0
Eucgr.K00149 Eucalyptus grandis HOM05D005662 ORTHO05D007004 1.4e-69 266.9 230 60.4
CANSAT56G2670 Cannabis sativa HOM05D005662 ORTHO05D007004 1.8e-69 266.5 233 58.8
Dinv28543 Davidia involucrata HOM05D005662 ORTHO05D007004 3.1e-69 265.8 232 58.2
COL.COLO4_14166 Corchorus olitorius HOM05D005662 ORTHO05D007004 5.3e-69 265.0 234 58.5
Manes.06G137000 Manihot esculenta HOM05D005662 ORTHO05D007004 5.3e-69 265.0 231 59.7
Thecc.03G160400 Theobroma cacao HOM05D005662 ORTHO05D007004 4.5e-68 261.9 228 61.0
Aqoxy7G00656 Aquilegia oxysepala HOM05D005662 ORTHO05D007004 5.8e-68 261.5 244 56.1
PSO063G7367 Papaver somniferum HOM05D005662 ORTHO05D007004 7.6e-68 261.2 135 97.0
MSTRG.8809 Avicennia marina HOM05D005662 ORTHO05D007004 9.9e-68 260.8 234 57.7
MD07G1257000 Malus domestica HOM05D005662 ORTHO05D007004 9.9e-68 260.8 225 62.2
RcHm_v2.0_Chr1g0374961 Rosa chinensis HOM05D005662 ORTHO05D007004 2.2e-67 259.6 226 61.5
Potri.015G129900 Populus trichocarpa HOM05D005662 ORTHO05D007004 3.8e-67 258.8 230 57.8
Cc02_g04010 Coffea canephora HOM05D005662 ORTHO05D007004 6.4e-67 258.1 227 56.8
Gorai.001G237900 Gossypium raimondii HOM05D005662 ORTHO05D007004 1.4e-66 256.9 233 56.2
MD01G1184800 Malus domestica HOM05D005662 ORTHO05D007004 3.2e-66 255.8 229 59.0
Duzib205G1232 Durio zibethinus HOM05D005662 ORTHO05D007004 4.2e-66 255.4 237 57.8
Gohir.D07G210500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 4.2e-66 255.4 233 55.8
CDE02G0217 Ceratophyllum demersum HOM05D005662 ORTHO05D007004 5.5e-66 255.0 231 58.4
THA.LOC104821401 Tarenaya hassleriana HOM05D005662 ORTHO05D007004 9.3e-66 254.2 228 58.8
PGR142G0586 Punica granatum HOM05D005662 ORTHO05D007004 1.2e-65 253.8 234 57.3
ECA232G3412 Erigeron canadensis HOM05D005662 ORTHO05D007004 1.6e-65 253.4 231 56.3
Gohir.A07G204500 Gossypium hirsutum HOM05D005662 ORTHO05D007004 1.6e-65 253.4 232 56.0
Solyc03g083540.3 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.7e-65 252.7 226 55.8
FvH4_7g28050 Fragaria vesca HOM05D005662 ORTHO05D007004 4.6e-65 251.9 229 59.0
vmacro06774 Vaccinium macrocarpon HOM05D005662 ORTHO05D007004 4.6e-65 251.9 233 56.2
Actinidia13561 Actinidia chinensis HOM05D005662 ORTHO05D007004 1.0e-64 250.8 225 57.3
Sopen03g023350 Solanum pennellii HOM05D005662 ORTHO05D007004 1.3e-64 250.4 226 55.3
HanXRQChr08g0223561 Helianthus annuus HOM05D005662 ORTHO05D007004 1.8e-64 250.0 231 57.1
Lsat_1_v5_gn_8_9401 Lactuca sativa HOM05D005662 ORTHO05D007004 2.3e-64 249.6 234 56.8
Ca_30761_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 3.0e-64 249.2 229 57.2
TPR.G15119 Trifolium pratense HOM05D005662 ORTHO05D007004 3.0e-64 249.2 216 58.8
Thhalv10004861m.g Eutrema salsugineum HOM05D005662 ORTHO05D007004 5.1e-64 248.4 226 58.0
Carub.0008s2298 Capsella rubella HOM05D005662 ORTHO05D007004 6.7e-64 248.1 225 56.9
Nitab4.5_0000072g0480 Nicotiana tabacum HOM05D005662 ORTHO05D007004 6.7e-64 248.1 229 55.5
Potri.012G128500 Populus trichocarpa HOM05D005662 ORTHO05D007004 1.1e-63 247.3 225 56.0
Phvul.011G004300 Phaseolus vulgaris HOM05D005662 ORTHO05D007004 2.5e-63 246.1 215 60.9
Medtr4g033850 Medicago truncatula HOM05D005662 ORTHO05D007004 7.4e-63 244.6 214 58.4
PGSC0003DMG400023012 Solanum tuberosum HOM05D005662 ORTHO05D007004 7.4e-63 244.6 226 54.9
Nitab4.5_0000481g0050 Nicotiana tabacum HOM05D005662 ORTHO05D007004 1.3e-62 243.8 229 55.0
Lalb_Chr15g0077021 Lupinus albus HOM05D005662 ORTHO05D007004 2.1e-62 243.0 214 57.9
AT5G62290 Arabidopsis thaliana HOM05D005662 ORTHO05D007004 2.8e-62 242.7 224 57.1
Lalb_Chr04g0260971 Lupinus albus HOM05D005662 ORTHO05D007004 6.2e-62 241.5 227 58.1
CARHR276070 Cardamine hirsuta HOM05D005662 ORTHO05D007004 8.1e-62 241.1 227 55.9
AL8G39110 Arabidopsis lyrata HOM05D005662 ORTHO05D007004 1.8e-61 240.0 227 56.4
Peaxi162Scf01372g00048 Petunia axillaris HOM05D005662 ORTHO05D007004 2.4e-61 239.6 227 53.7
Psat7g191960 Pisum sativum HOM05D005662 ORTHO05D007004 2.4e-61 239.6 233 55.4
SalBow4G2223 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.1e-61 239.2 229 55.5
SalBow4G3324 Salvia bowleyana HOM05D005662 ORTHO05D007004 3.1e-61 239.2 229 55.5
SGA_v2.0_scaffold2G01165 Striga asiatica HOM05D005662 ORTHO05D007004 9.0e-61 237.7 230 57.0
Sp2g25490 Schrenkiella parvula HOM05D005662 ORTHO05D007004 1.5e-60 236.9 227 54.2
Migut.F00442 Erythranthe guttata HOM05D005662 ORTHO05D007004 2.0e-60 236.5 232 54.3
arahy.Tifrunner.gnm1.ann1.93Q1AU Arachis hypogaea HOM05D005662 ORTHO05D007004 3.4e-60 235.7 229 56.8
VMungo1127G2067 Vigna mungo HOM05D005662 ORTHO05D007004 3.4e-60 235.7 214 59.8
arahy.Tifrunner.gnm1.ann1.QSR7PX Arachis hypogaea HOM05D005662 ORTHO05D007004 2.9e-59 232.6 229 55.9
arahy.Tifrunner.gnm1.ann1.TMT042 Arachis hypogaea HOM05D005662 ORTHO05D007004 2.9e-59 232.6 229 56.3
Duzib084G0609 Durio zibethinus HOM05D005662 ORTHO05D007004 2.9e-59 232.6 223 56.1
HanXRQChr16g0512531 Helianthus annuus HOM05D005662 ORTHO05D007004 3.8e-59 232.3 232 54.3
Sed0027239 Sechium edule HOM05D005662 ORTHO05D007004 3.8e-59 232.3 238 50.4
Aa31LG11G1300 Aethionema arabicum HOM05D005662 ORTHO05D007004 4.9e-59 231.9 230 55.2
Oeu039209.1 Olea europaea HOM05D005662 ORTHO05D007004 1.1e-58 230.7 210 54.3
Sabra12G0096500 Salix brachista HOM05D005662 ORTHO05D007004 1.1e-58 230.7 205 56.1
DCAR_015743 Daucus carota HOM05D005662 ORTHO05D007004 1.4e-58 230.3 228 52.2
BcaB07g29785 Brassica carinata HOM05D005662 ORTHO05D007004 3.2e-58 229.2 231 54.5
SGA_v2.0_scaffold486G52387 Striga asiatica HOM05D005662 ORTHO05D007004 3.2e-58 229.2 239 54.0
arahy.Tifrunner.gnm1.ann1.LZP622 Arachis hypogaea HOM05D005662 ORTHO05D007004 4.2e-58 228.8 229 55.9
Glyma.14G044000 Glycine max HOM05D005662 ORTHO05D007004 7.1e-58 228.0 212 58.0
unitig_37.g12504 Utricularia gibba HOM05D005662 ORTHO05D007004 9.3e-58 227.6 216 57.9
Glyma.09G233200 Glycine max HOM05D005662 ORTHO05D007004 1.2e-57 227.3 201 58.2
MELO3C005412.2 Cucumis melo HOM05D005662 ORTHO05D007004 1.6e-57 226.9 236 49.2
ATR0733G084 Amborella trichopoda HOM05D005662 ORTHO05D007004 4.6e-57 225.3 234 51.7
EL10Ac3g05805 Beta vulgaris HOM05D005662 ORTHO05D007004 1.3e-56 223.8 232 51.7
A02p42240 Brassica napus HOM05D005662 ORTHO05D007004 1.3e-56 223.8 228 53.5
HPP92_004603 Vanilla planifolia HOM05D005662 ORTHO05D007004 1.8e-56 223.4 220 53.6
C02p62090 Brassica napus HOM05D005662 ORTHO05D007004 3.0e-56 222.6 229 53.3
Lj3g0023650 Lotus japonicus HOM05D005662 ORTHO05D007004 5.7e-55 218.4 243 51.4
BolC3t18716H Brassica oleracea HOM05D005662 ORTHO05D007004 2.8e-54 216.1 231 53.2
BraA06t25849Z Brassica rapa HOM05D005662 ORTHO05D007004 3.7e-54 215.7 236 53.0
ClCG01G005160 Citrullus lanatus HOM05D005662 ORTHO05D007004 6.3e-54 214.9 278 43.9
SEGI_33447 Sequoiadendron giganteum HOM05D005662 ORTHO05D007004 9.0e-53 211.1 217 53.5
Hund04625 Selenicereus undatus HOM05D005662 ORTHO05D007004 2.0e-52 209.9 210 50.5
Ca_00244_v3 Cicer arietinum L. HOM05D005662 ORTHO05D007004 1.3e-51 207.2 176 60.2
Rhsim03G0170700 Rhododendron simsii HOM05D005662 ORTHO05D007004 6.5e-51 204.9 286 43.4
Haze_13835 Corylus avellana HOM05D005662 ORTHO05D007004 1.9e-50 203.4 231 51.9
Os10g0170000 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 2.7e-49 199.5 229 49.8
BraA02t09152Z Brassica rapa HOM05D005662 ORTHO05D007004 3.5e-49 199.1 245 47.8
A06p29040 Brassica napus HOM05D000207 ORTHO05D001482 2.3e-48 196.4 214 52.3
C03p64570 Brassica napus HOM05D000207 ORTHO05D001482 2.3e-48 196.4 210 52.4
Os03g0249300 Oryza sativa ssp. japonica HOM05D005662 ORTHO05D007004 7.4e-47 191.4 223 48.4
Zm00001eb010690 Zea mays HOM05D005662 ORTHO05D007004 1.1e-45 187.6 261 43.7
Sed0014362 Sechium edule HOM05D005662 ORTHO05D007004 1.8e-45 186.8 230 43.0
Zm00001eb224250 Zea mays HOM05D005662 ORTHO05D007004 4.1e-45 185.7 222 47.7
Cfa008223 Carpinus fangiana HOM05D000922 ORTHO05D007004 6.7e-40 168.3 151 57.0
SMO351G0592 Selaginella moellendorffii HOM05D005662 ORTHO05D007004 6.7e-40 168.3 221 41.6
Mapoly0005s0155 Marchantia polymorpha HOM05D005662 ORTHO05D007004 9.7e-39 164.5 228 40.4
Atru.chr1.654 Acer truncatum HOM05D005662 ORTHO05D007004 1.8e-37 160.2 170 54.7
Sabra15G0143400 Salix brachista HOM05D005662 ORTHO05D007004 5.3e-37 158.7 184 45.1
Sc13g0007790 Simmondsia chinensis HOM05D005662 ORTHO05D007004 7.7e-36 154.8 134 56.7
CBR_g40194 Chara braunii HOM05D005662 ORTHO05D007004 2.2e-35 153.3 240 38.8
Cpa.g.sc130.1 Carica papaya HOM05D005662 ORTHO05D007004 2.9e-35 152.9 93 72.0
Pp3c16_14910 Physcomitrium patens HOM05D005662 ORTHO05D007004 7.2e-34 148.3 230 38.7
Pp3c5_5760 Physcomitrium patens HOM05D005662 ORTHO05D007004 9.4e-34 147.9 230 40.0
Ah.13g067320 Amaranthus hybridus HOM05D005662 ORTHO05D007004 1.3e-30 137.5 96 65.6
AUR62016115 Chenopodium quinoa HOM05D005662 ORTHO05D007004 3.1e-29 132.9 226 37.6
Lsat_1_v5_gn_9_52481 Lactuca sativa HOM05D005662 ORTHO05D007004 4.2e-26 122.5 202 38.1
CAN.G152.22 Capsicum annuum HOM05D005662 ORTHO05D007004 2.0e-23 113.6 121 49.6
AagrBONN_evm.TU.Sc2ySwM_368.1564 Anthoceros agrestis HOM05D005662 ORTHO05D007004 6.3e-22 108.6 129 45.7
BcaC03g18141 Brassica carinata HOM05D000207 ORTHO05D001482 9.1e-21 104.8 111 53.2
PRCOL_00002770 Prasinoderma coloniale HOM05D005662 ORTHO05D007004 6.5e-19 98.6 206 36.4
arahy.Tifrunner.gnm1.ann1.6UH5I2 Arachis hypogaea HOM05D005662 ORTHO05D007004 1.1e-18 97.8 133 45.1
Ah.13g067330 Amaranthus hybridus HOM05D005662 ORTHO05D007004 3.6e-17 92.8 96 55.2
COL.COLO4_29300 Corchorus olitorius HOM05D005662 ORTHO05D007004 3.6e-17 92.8 109 44.0
DCAR_018618 Daucus carota HOM05D005662 ORTHO05D007004 3.6e-17 92.8 141 39.7
Cre12.g538150 Chlamydomonas reinhardtii HOM05D005662 ORTHO05D007004 6.1e-17 92.0 160 35.0
AUR62035061 Chenopodium quinoa HOM05D005662 ORTHO05D007004 1.3e-14 84.3 101 45.5
Solyc06g011630.1 Solanum lycopersicum HOM05D005662 ORTHO05D007004 2.8e-14 83.2 53 67.9
MCO15G129 Micromonas commoda HOM05D005662 ORTHO05D007004 1.4e-13 80.9 187 29.9
Thecc.03G160100 Theobroma cacao HOM05D005662 ORTHO05D007004 1.6e-12 77.4 131 39.7
Ciclev10006356m.g Citrus clementina HOM05D005662 ORTHO05D007004 1.3e-11 74.3 79 54.4
DCAR_021652 Daucus carota HOM05D000949 ORTHO05D001276 8.8e-08 61.6 101 36.6
DCAR_023430 Daucus carota HOM05D005662 ORTHO05D004064 2.0e-07 60.5 77 41.6
FvH4_3g21360 Fragaria vesca HOM05D005731 ORTHO05D012104 8.3e-06 55.1 82 43.9


User provided reference genes

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