Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G3227 Papaver somniferum HOM05D004308 ORTHO05D005139 1.7e-285 985.3 510 100.0
PSO063G3498 Papaver somniferum HOM05D004308 ORTHO05D005139 4.1e-247 857.8 457 97.2
Aqoxy7G00472 Aquilegia oxysepala HOM05D004308 ORTHO05D005139 2.5e-191 672.5 515 68.0
TAR369G0492 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.4e-186 656.8 505 66.7
MBI13_g29631_MAGBIO Magnolia biondii HOM05D004308 ORTHO05D005139 8.0e-182 641.0 497 68.4
GSVIVG01025407001 Vitis vinifera HOM05D004308 ORTHO05D005139 8.2e-179 630.9 510 65.9
Dinv13431 Davidia involucrata HOM05D004308 ORTHO05D005139 9.1e-178 627.5 510 66.3
QL01p008001 Quercus lobata HOM05D004308 ORTHO05D005139 4.2e-175 618.6 501 65.1
TWI32G0511 Tripterygium wilfordii HOM05D004308 ORTHO05D005139 3.0e-173 612.5 501 63.3
CiPaw.13G173300 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.1e-170 604.0 490 63.9
RcHm_v2.0_Chr5g0081551 Rosa chinensis HOM05D004308 ORTHO05D005139 1.0e-168 597.4 507 61.7
CiPaw.13G173400 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.7e-168 596.7 490 63.1
Atru.chr1.4126 Acer truncatum HOM05D004308 ORTHO05D005139 1.2e-166 590.5 502 63.1
Gorai.011G002800 Gossypium raimondii HOM05D004308 ORTHO05D005139 6.1e-166 588.2 515 60.6
Prupe.6G010000 Prunus persica HOM05D004308 ORTHO05D005139 6.1e-166 588.2 510 60.6
MD03G1008000 Malus domestica HOM05D004308 ORTHO05D005139 1.0e-165 587.4 500 61.6
Potri.003G216900 Populus trichocarpa HOM05D004308 ORTHO05D005139 1.0e-165 587.4 501 61.5
Thecc.09G212800 Theobroma cacao HOM05D004308 ORTHO05D005139 3.0e-165 585.9 501 62.7
Duzib177G0548 Durio zibethinus HOM05D004308 ORTHO05D005139 3.4e-164 582.4 494 62.6
FvH4_3g44841 Fragaria vesca HOM05D004308 ORTHO05D005139 3.4e-164 582.4 506 60.3
Ciclev10015009m.g Citrus clementina HOM05D004308 ORTHO05D005139 1.3e-163 580.5 494 61.7
MD12G1151800 Malus domestica HOM05D004308 ORTHO05D005139 1.7e-163 580.1 500 60.8
Actinidia06853 Actinidia chinensis HOM05D004308 ORTHO05D005139 2.2e-163 579.7 500 61.0
ClCG01G010120 Citrullus lanatus HOM05D004308 ORTHO05D005139 3.7e-163 578.9 514 60.5
ClCG08G005760 Citrullus lanatus HOM05D004308 ORTHO05D005139 1.1e-162 577.4 514 59.9
Ah.06g193030 Amaranthus hybridus HOM05D004308 ORTHO05D005139 1.8e-162 576.6 503 63.0
Carub.0001s1154 Capsella rubella HOM05D004308 ORTHO05D005139 5.4e-162 575.1 500 60.4
Thhalv10007452m.g Eutrema salsugineum HOM05D004308 ORTHO05D005139 7.0e-162 574.7 505 58.8
AUR62000023 Chenopodium quinoa HOM05D004308 ORTHO05D005139 1.0e-160 570.9 500 60.8
Lj3g0012221 Lotus japonicus HOM05D004308 ORTHO05D005139 1.0e-160 570.9 493 60.9
Hund21645 Selenicereus undatus HOM05D004308 ORTHO05D005139 1.0e-160 570.9 493 62.1
MELO3C015647.2 Cucumis melo HOM05D004308 ORTHO05D005139 1.7e-160 570.1 495 61.2
Sed0009913 Sechium edule HOM05D004308 ORTHO05D005139 2.3e-160 569.7 497 62.4
Eucgr.F02225 Eucalyptus grandis HOM05D004308 ORTHO05D005139 2.9e-160 569.3 494 61.1
Aa31LG1G2850 Aethionema arabicum HOM05D004308 ORTHO05D005139 5.0e-160 568.5 514 58.8
LjContig00141g0028139 Lotus japonicus HOM05D004308 ORTHO05D005139 6.6e-160 568.2 493 60.9
Manes.17G081200 Manihot esculenta HOM05D004308 ORTHO05D005139 1.5e-159 567.0 495 61.2
Sp1g10500 Schrenkiella parvula HOM05D004308 ORTHO05D005139 1.5e-159 567.0 506 58.7
Cc00_g18210 Coffea canephora HOM05D004308 ORTHO05D005139 1.9e-159 566.6 516 57.6
BcaB03g13224 Brassica carinata HOM05D004308 ORTHO05D005139 5.6e-159 565.1 503 58.1
AL1G23050 Arabidopsis lyrata HOM05D004308 ORTHO05D005139 7.3e-159 564.7 513 58.5
BolC8t52327H Brassica oleracea HOM05D004308 ORTHO05D005139 2.8e-158 562.8 503 58.1
CSS0019756 Camellia sinensis var. sinensis HOM05D004308 ORTHO05D005139 4.7e-158 562.0 506 61.3
FAN11G1034 Fragaria x ananassa HOM05D004308 ORTHO05D005139 6.1e-158 561.6 494 59.5
Lalb_Chr05g0219691 Lupinus albus HOM05D004308 ORTHO05D005139 8.0e-158 561.2 494 59.3
BraA08t35236Z Brassica rapa HOM05D004308 ORTHO05D005139 1.0e-157 560.8 510 57.6
A08p33180 Brassica napus HOM05D004308 ORTHO05D005139 1.8e-157 560.1 509 57.8
arahy.Tifrunner.gnm1.ann1.6VJH5B Arachis hypogaea HOM05D004308 ORTHO05D005139 2.3e-157 559.7 500 60.6
C08p15000 Brassica napus HOM05D004308 ORTHO05D005139 3.0e-157 559.3 503 57.9
BolC8t49130H Brassica oleracea HOM05D004308 ORTHO05D005139 3.0e-157 559.3 503 57.9
PGSC0003DMG400032139 Solanum tuberosum HOM05D004308 ORTHO05D005139 3.0e-157 559.3 511 58.7
Nitab4.5_0001059g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 5.2e-157 558.5 497 60.8
THA.LOC104811063 Tarenaya hassleriana HOM05D004308 ORTHO05D005139 8.9e-157 557.8 499 60.7
A09p64290 Brassica napus HOM05D004308 ORTHO05D005139 1.2e-156 557.4 493 57.8
BraA09t41772Z Brassica rapa HOM05D004308 ORTHO05D005139 1.2e-156 557.4 493 57.8
Sopen01g002010 Solanum pennellii HOM05D004308 ORTHO05D005139 1.5e-156 557.0 512 59.2
CAN.G158.6 Capsicum annuum HOM05D004308 ORTHO05D005139 3.4e-156 555.8 503 59.0
C08p47900 Brassica napus HOM05D004308 ORTHO05D005139 7.5e-156 554.7 508 56.7
Glyma.07G221600 Glycine max HOM05D004308 ORTHO05D005139 1.3e-155 553.9 492 58.9
Solyc01g006000.3 Solanum lycopersicum HOM05D004308 ORTHO05D005139 1.3e-155 553.9 512 58.8
EL10Ac4g10352 Beta vulgaris HOM05D004308 ORTHO05D005139 3.2e-154 549.3 498 60.8
CDE05G0081 Ceratophyllum demersum HOM05D004269 ORTHO05D007106 4.1e-154 548.9 489 58.3
ECA238G0198 Erigeron canadensis HOM05D004308 ORTHO05D005139 3.0e-152 542.7 496 57.5
Medtr4g084070 Medicago truncatula HOM05D004308 ORTHO05D005139 3.3e-151 539.3 493 58.6
DCAR_001990 Daucus carota HOM05D004308 ORTHO05D005139 5.6e-151 538.5 497 57.5
Peaxi162Scf00100g00724 Petunia axillaris HOM05D004308 ORTHO05D005139 1.2e-150 537.3 542 55.7
vmacro11846 Vaccinium macrocarpon HOM05D004308 ORTHO05D005139 1.2e-150 537.3 572 54.0
SGA_v2.0_scaffold28G11761 Striga asiatica HOM05D004308 ORTHO05D005139 4.7e-150 535.4 502 57.0
TPR.G20984 Trifolium pratense HOM05D004308 ORTHO05D005139 1.8e-149 533.5 498 57.6
Migut.I00336 Erythranthe guttata HOM05D004308 ORTHO05D005139 8.9e-149 531.2 501 58.3
Phvul.009G191800 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.5e-148 530.4 493 57.0
FAN21G1794 Fragaria x ananassa HOM05D004308 ORTHO05D005139 5.8e-148 528.5 466 58.6
Lsat_1_v5_gn_3_32861 Lactuca sativa HOM05D004308 ORTHO05D005139 9.8e-148 527.7 510 55.9
VMungo0251G2308 Vigna mungo HOM05D004308 ORTHO05D005139 1.3e-147 527.3 493 57.2
Gohir.A10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.7e-147 526.9 468 60.3
SalBow5G0018 Salvia bowleyana HOM05D004308 ORTHO05D005139 2.2e-147 526.6 511 56.0
arahy.Tifrunner.gnm1.ann1.SIQ1MV Arachis hypogaea HOM05D004308 ORTHO05D005139 3.7e-147 525.8 513 58.3
Rhsim13G0230300 Rhododendron simsii HOM05D004308 ORTHO05D005139 6.6e-144 515.0 451 59.0
Duzib177G1053 Durio zibethinus HOM05D004308 ORTHO05D005139 9.5e-143 511.1 439 61.0
AUR62019194 Chenopodium quinoa HOM05D004308 ORTHO05D005139 2.8e-142 509.6 500 56.2
Haze_22983 Corylus avellana HOM05D004308 ORTHO05D005139 4.7e-142 508.8 439 61.7
Hma1.2p1_0972F.1_g242793 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 3.1e-141 506.1 520 54.8
FAN25G2014 Fragaria x ananassa HOM05D004308 ORTHO05D005139 8.9e-141 504.6 451 58.1
Lj9C99G0 Lonicera japonica HOM05D004308 ORTHO05D005139 1.4e-138 497.3 507 56.0
Psat7g130280 Pisum sativum HOM05D004308 ORTHO05D005139 1.9e-138 496.9 494 55.5
CiPaw.04G144200 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.6e-137 493.8 446 60.3
Os12g0498700 Oryza sativa ssp. japonica HOM05D004308 ORTHO05D005139 6.6e-136 488.4 494 53.4
Zm00001eb162820 Zea mays HOM05D004308 ORTHO05D005139 4.3e-135 485.7 487 55.6
Sabra03G0162000 Salix brachista HOM05D004308 ORTHO05D005139 1.6e-134 483.8 492 54.9
Gohir.D10G002400 Gossypium hirsutum HOM05D004308 ORTHO05D005139 6.2e-134 481.9 405 63.5
HanXRQChr07g0196751 Helianthus annuus HOM05D004308 ORTHO05D005139 1.1e-133 481.1 451 55.4
CsaV3_1G042220 Cucumis sativus L. HOM05D004308 ORTHO05D005139 1.9e-127 460.3 352 65.3
CANSAT78G0795 Cannabis sativa HOM05D004308 ORTHO05D005139 1.8e-125 453.8 400 60.2
ATR0598G220 Amborella trichopoda HOM05D004308 ORTHO05D005139 3.4e-124 449.5 384 58.3
Cpa.g.sc1833.2 Carica papaya HOM05D004308 ORTHO05D005139 3.5e-121 439.5 470 54.5
Nn4g26332 Nelumbo nucifera HOM05D004308 ORTHO05D005139 2.4e-117 426.8 504 51.0
HPP92_026953 Vanilla planifolia HOM05D004308 ORTHO05D005139 2.4e-117 426.8 332 62.0
Phvul.002G098000 Phaseolus vulgaris HOM05D004308 ORTHO05D005139 1.1e-114 417.9 348 59.8
AT1G11880 Arabidopsis thaliana HOM05D004308 ORTHO05D005139 5.4e-114 415.6 354 59.9
CiPaw.13G173800 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-112 410.6 491 49.3
MD14G1141900 Malus domestica HOM05D004308 ORTHO05D005139 6.7e-112 408.7 356 60.7
Nitab4.5_0022753g0010 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.4e-109 400.2 361 58.2
unitig_749.g14167 Utricularia gibba HOM05D004308 ORTHO05D005139 1.4e-106 391.0 514 48.2
Pp3c10_8190 Physcomitrium patens HOM05D004308 ORTHO05D005139 4.2e-106 389.4 504 43.1
Mapoly0040s0060 Marchantia polymorpha HOM05D004308 ORTHO05D005139 5.5e-106 389.0 511 43.6
Ca_18762_v3 Cicer arietinum L. HOM05D004308 ORTHO05D005139 1.8e-101 374.0 437 48.7
SHI31261 Sapria himalayana HOM05D004308 ORTHO05D005139 3.1e-101 373.2 581 41.3
MD11G1011600 Malus domestica HOM05D004308 ORTHO05D005139 1.2e-100 371.3 400 51.2
Lju963A2G3 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-97 361.3 344 56.7
SMO203G0184 Selaginella moellendorffii HOM05D004308 ORTHO05D005139 1.2e-97 361.3 493 43.2
Zm00001eb118570 Zea mays HOM05D004308 ORTHO05D005139 7.9e-97 358.6 289 63.3
Sc09g0000270 Simmondsia chinensis HOM05D004308 ORTHO05D005139 1.9e-95 354.0 328 57.9
TAR623G1609 Trochodendron aralioides HOM05D004308 ORTHO05D005139 1.3e-91 341.3 252 70.6
SEGI_38936 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.9e-91 340.1 371 50.1
CiPaw.13G173700 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.5e-90 335.9 379 53.8
Hma1.2p1_0972F.1_g242796 Hydrangea macrophylla HOM05D004308 ORTHO05D005139 1.5e-87 327.8 257 65.8
Lj9A102G3 Lonicera japonica HOM05D004308 ORTHO05D005139 5.7e-87 325.9 382 49.5
CiPaw.13G173500 Carya illinoinensis HOM05D004308 ORTHO05D005139 2.4e-85 320.5 275 61.1
COL.COLO4_34992 Corchorus olitorius HOM05D004308 ORTHO05D005139 3.6e-81 306.6 230 67.0
Lsat_1_v5_gn_4_166260 Lactuca sativa HOM05D004308 ORTHO05D005139 6.1e-81 305.8 295 54.9
MD03G1008200 Malus domestica HOM05D004308 ORTHO05D005139 1.3e-78 298.1 350 49.7
CARHR012200 Cardamine hirsuta HOM05D004308 ORTHO05D005139 5.0e-75 286.2 243 59.7
Lju1040C2G10 Lonicera japonica HOM05D004308 ORTHO05D005139 3.5e-68 263.5 252 56.3
Lj9A97G16 Lonicera japonica HOM05D004308 ORTHO05D005139 7.2e-66 255.8 367 43.3
SEGI_23646 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 2.3e-64 250.8 216 58.3
CiPaw.04G144000 Carya illinoinensis HOM05D004308 ORTHO05D005139 5.2e-64 249.6 161 71.4
CiPaw.13G173600 Carya illinoinensis HOM05D004308 ORTHO05D005139 1.8e-61 241.1 224 56.2
Lju366A0G8 Lonicera japonica HOM05D004308 ORTHO05D005139 2.9e-59 233.8 200 58.5
Lju357C0G0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.8e-56 222.6 376 40.2
Sc09g0000260 Simmondsia chinensis HOM05D004308 ORTHO05D005139 6.8e-56 222.6 171 66.1
CiPaw.13G174000 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.8e-54 216.5 199 56.3
Lsat_1_v5_gn_3_8900 Lactuca sativa HOM05D004308 ORTHO05D005139 1.9e-50 204.5 200 53.5
Lju963A1G2 Lonicera japonica HOM05D004308 ORTHO05D005139 4.7e-49 199.9 432 35.9
MCO10G290 Micromonas commoda HOM05D004308 ORTHO05D005139 2.3e-48 197.6 511 31.7
Lju2253A0T6 Lonicera japonica HOM05D004308 ORTHO05D005139 3.0e-48 197.2 279 47.0
Gohir.A10G158900 Gossypium hirsutum HOM05D004308 ORTHO05D005139 1.3e-43 181.8 214 50.5
Lju1680A2G14 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-42 177.6 205 53.2
QL01p010377 Quercus lobata HOM05D004308 ORTHO05D005139 6.1e-41 172.9 119 68.1
Nitab4.5_0000775g0120 Nicotiana tabacum HOM05D004308 ORTHO05D005139 2.4e-37 161.0 177 52.5
SEGI_23095 Sequoiadendron giganteum HOM05D004308 ORTHO05D005139 3.0e-35 154.1 165 48.5
PRCOL_00002453 Prasinoderma coloniale HOM05D004308 ORTHO05D005139 4.0e-32 143.7 445 28.5
DCAR_001389 Daucus carota HOM05D004308 ORTHO05D005139 5.8e-31 139.8 104 70.2
Cre07.g320650 Chlamydomonas reinhardtii HOM05D004308 ORTHO05D005139 3.7e-30 137.1 602 26.4
Glyma.20G019967 Glycine max HOM05D004308 ORTHO05D005139 3.6e-25 120.6 137 43.1
Nitab4.5_0000032g0180 Nicotiana tabacum HOM05D004308 ORTHO05D005139 8.1e-25 119.4 119 58.8
Lju2253C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 1.8e-24 118.2 110 63.6
Lju366C0T1 Lonicera japonica HOM05D004308 ORTHO05D005139 5.2e-24 116.7 110 62.7
Lj9C97T10 Lonicera japonica HOM05D004308 ORTHO05D005139 1.2e-23 115.5 110 60.9
Glyma.20G020033 Glycine max HOM05D004308 ORTHO05D005139 2.0e-23 114.8 94 68.1
Lju963A4G1 Lonicera japonica HOM05D004308 ORTHO05D005139 4.3e-18 97.1 65 60.0
Lj9A108T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-17 94.7 79 58.2
Lju1680A2G13 Lonicera japonica HOM05D004308 ORTHO05D005139 1.5e-15 88.6 64 71.9
CBR_g46841 Chara braunii HOM05D004308 ORTHO05D005139 2.6e-15 87.8 87 48.3
Lju963C4T0 Lonicera japonica HOM05D004308 ORTHO05D005139 6.4e-14 83.2 81 61.7
Lsat_1_v5_gn_9_99701 Lactuca sativa HOM05D004308 ORTHO05D005139 1.1e-13 82.4 69 60.9
Lju357C1T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.1e-12 78.2 81 56.8
Atru.chr10.196 Acer truncatum HOM05D004308 ORTHO05D005139 3.5e-12 77.4 54 68.5
Lju366C0T2 Lonicera japonica HOM05D004308 ORTHO05D005139 1.3e-11 75.5 77 58.4
Lju2253C0T0 Lonicera japonica HOM05D004308 ORTHO05D005139 2.5e-10 71.2 74 56.8
Atru.chr10.219 Acer truncatum HOM05D004308 ORTHO05D005139 4.3e-10 70.5 107 46.7
CiPaw.13G174100 Carya illinoinensis HOM05D004308 ORTHO05D005139 4.3e-10 70.5 72 48.6
AUR62037285 Chenopodium quinoa HOM05D004308 ORTHO05D005139 4.0e-08 63.9 40 72.5


User provided reference genes

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