Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2788 Papaver somniferum HOM05D004815 ORTHO05D005742 4.2e-209 731.1 364 100.0
PSO478G4379 Papaver somniferum HOM05D004815 ORTHO05D005742 3.5e-200 701.4 364 96.2
TAR629G0568 Trochodendron aralioides HOM05D004815 ORTHO05D005742 3.9e-130 468.8 374 63.6
GSVIVG01027589001 Vitis vinifera HOM05D004815 ORTHO05D005742 7.5e-126 454.5 374 62.6
Aqoxy7G00483 Aquilegia oxysepala HOM05D004815 ORTHO05D005742 9.9e-126 454.1 371 62.5
TAR636G2513 Trochodendron aralioides HOM05D004815 ORTHO05D005742 1.4e-124 450.3 372 62.6
Haze_16704 Corylus avellana HOM05D004815 ORTHO05D005742 5.4e-124 448.4 372 61.6
Potri.002G152300 Populus trichocarpa HOM05D004815 ORTHO05D005742 5.4e-124 448.4 371 62.8
CiPaw.01G257600 Carya illinoinensis HOM05D004815 ORTHO05D005742 7.1e-124 448.0 374 62.0
Potri.014G078300 Populus trichocarpa HOM05D004815 ORTHO05D005742 9.2e-124 447.6 368 62.8
Cfa001810 Carpinus fangiana HOM05D004815 ORTHO05D005742 1.6e-123 446.8 374 61.5
Atru.chr5.381_Atru.chr5.382 Acer truncatum HOM05D004815 ORTHO05D005742 2.1e-123 446.4 369 62.9
MD02G1195800 Malus domestica HOM05D004815 ORTHO05D005742 1.7e-122 443.4 374 59.6
Thecc.01G370200 Theobroma cacao HOM05D004815 ORTHO05D005742 3.0e-122 442.6 374 62.0
Ciclev10020702m.g Citrus clementina HOM05D004815 ORTHO05D005742 3.9e-122 442.2 374 60.7
Medtr8g033040 Medicago truncatula HOM05D004815 ORTHO05D005742 3.9e-122 442.2 365 63.8
Manes.05G040900 Manihot esculenta HOM05D004815 ORTHO05D005742 1.9e-121 439.9 373 61.1
Lj7C524T7 Lonicera japonica HOM05D004815 ORTHO05D005742 3.3e-121 439.1 364 61.3
Sabra14G0053800 Salix brachista HOM05D004815 ORTHO05D005742 4.3e-121 438.7 376 61.4
TPR.G17395 Trifolium pratense HOM05D004815 ORTHO05D005742 4.3e-121 438.7 366 62.6
Cc02_g37080 Coffea canephora HOM05D004815 ORTHO05D005742 5.6e-121 438.3 371 61.2
MBI04_g28567_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.1e-120 436.4 358 61.2
Manes.01G263200 Manihot esculenta HOM05D004815 ORTHO05D005742 2.1e-120 436.4 373 60.6
Gohir.A07G144600 Gossypium hirsutum HOM05D004815 ORTHO05D005742 8.1e-120 434.5 375 59.7
Lalb_Chr17g0340041 Lupinus albus HOM05D004815 ORTHO05D005742 8.1e-120 434.5 372 60.5
Actinidia31455 Actinidia chinensis HOM05D004815 ORTHO05D005742 1.4e-119 433.7 379 59.4
Duzib133G0793 Durio zibethinus HOM05D004815 ORTHO05D005742 1.4e-119 433.7 376 60.4
TWI23G0970 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 2.4e-119 433.0 368 60.9
Lj3g0020425 Lotus japonicus HOM05D004815 ORTHO05D005742 4.0e-119 432.2 372 61.3
Ca_23774_v3 Cicer arietinum L. HOM05D004815 ORTHO05D005742 1.5e-118 430.3 364 62.1
arahy.Tifrunner.gnm1.ann1.GZV6IQ Arachis hypogaea HOM05D004815 ORTHO05D005742 2.6e-118 429.5 366 60.9
CsaV3_6G005940 Cucumis sativus L. HOM05D004815 ORTHO05D005742 3.4e-118 429.1 374 58.8
arahy.Tifrunner.gnm1.ann1.32Q5MD Arachis hypogaea HOM05D004815 ORTHO05D005742 7.6e-118 427.9 366 60.9
FAN01G1324 Fragaria x ananassa HOM05D004815 ORTHO05D005742 9.9e-118 427.6 374 58.0
Gorai.001G172600 Gossypium raimondii HOM05D004815 ORTHO05D005742 1.3e-117 427.2 375 59.5
MELO3C022521.2 Cucumis melo HOM05D004815 ORTHO05D005742 2.2e-117 426.4 374 58.3
FAN10G2694 Fragaria x ananassa HOM05D004815 ORTHO05D005742 3.8e-117 425.6 374 57.8
Gohir.D07G150500 Gossypium hirsutum HOM05D004815 ORTHO05D005742 6.4e-117 424.9 375 59.2
RcHm_v2.0_Chr1g0351921 Rosa chinensis HOM05D004815 ORTHO05D005742 8.4e-117 424.5 374 57.8
Cc09_g02920 Coffea canephora HOM05D004815 ORTHO05D005742 3.2e-116 422.5 370 59.5
TPR.G17590 Trifolium pratense HOM05D004815 ORTHO05D005742 3.2e-116 422.5 364 60.4
TWI59G0538 Tripterygium wilfordii HOM05D004815 ORTHO05D005742 5.4e-116 421.8 374 58.6
Cpa.g.sc18.178 Carica papaya HOM05D004815 ORTHO05D005742 1.2e-115 420.6 373 57.6
CANSAT56G0719 Cannabis sativa HOM05D004815 ORTHO05D005742 2.1e-115 419.9 378 57.7
PGR031G2979 Punica granatum HOM05D004815 ORTHO05D005742 3.0e-114 416.0 369 58.3
Glyma.03G018700 Glycine max HOM05D004815 ORTHO05D005742 6.6e-114 414.8 372 58.9
Lalb_Chr10g0097591 Lupinus albus HOM05D004815 ORTHO05D005742 2.5e-113 412.9 372 58.1
VMungo0331G0142 Vigna mungo HOM05D004815 ORTHO05D005742 9.6e-113 411.0 374 58.6
SGA_v2.0_scaffold153G37057 Striga asiatica HOM05D004815 ORTHO05D005742 2.1e-112 409.8 368 58.4
Migut.B01673 Erythranthe guttata HOM05D004815 ORTHO05D005742 2.4e-111 406.4 364 57.7
FAN06G3277 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.9e-111 404.8 371 56.1
FAN06G3416 Fragaria x ananassa HOM05D004815 ORTHO05D005742 6.9e-111 404.8 371 56.1
ECA236G5005 Erigeron canadensis HOM05D004815 ORTHO05D005742 2.2e-109 399.8 366 56.0
MSTRG.20784 Avicennia marina HOM05D004815 ORTHO05D005742 6.4e-109 398.3 373 55.8
HanXRQChr06g0169351 Helianthus annuus HOM05D004815 ORTHO05D005742 1.4e-108 397.1 365 56.2
Sed0027777 Sechium edule HOM05D004815 ORTHO05D005742 1.9e-108 396.7 376 55.3
Rhsim07G0022400 Rhododendron simsii HOM05D004815 ORTHO05D005742 4.6e-107 392.1 366 55.7
Glyma.07G080200 Glycine max HOM05D004815 ORTHO05D005742 1.7e-106 390.2 355 59.2
Sabra02G0120600 Salix brachista HOM05D004815 ORTHO05D005742 3.0e-106 389.4 371 56.6
EL10Ac1g00976 Beta vulgaris HOM05D004815 ORTHO05D005742 3.9e-106 389.0 376 53.2
SalBow7G0216 Salvia bowleyana HOM05D004815 ORTHO05D005742 5.1e-106 388.7 415 49.9
Psat4g200880 Pisum sativum HOM05D004815 ORTHO05D005742 6.6e-106 388.3 346 60.1
Solyc01g091900.3 Solanum lycopersicum HOM05D004815 ORTHO05D005742 6.6e-106 388.3 373 52.8
Lalb_Chr19g0127171 Lupinus albus HOM05D004815 ORTHO05D005742 8.7e-106 387.9 376 55.9
Nitab4.5_0013229g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 8.7e-106 387.9 377 53.1
AUR62033376 Chenopodium quinoa HOM05D004815 ORTHO05D005742 1.1e-105 387.5 372 54.3
PGSC0003DMG400000005 Solanum tuberosum HOM05D004815 ORTHO05D005742 1.9e-105 386.7 372 52.2
A05p05650 Brassica napus HOM05D004815 ORTHO05D005742 5.6e-105 385.2 371 54.7
BraA05t19537Z Brassica rapa HOM05D004815 ORTHO05D005742 9.6e-105 384.4 371 54.7
DCAR_006900 Daucus carota HOM05D004815 ORTHO05D005742 1.6e-104 383.6 342 59.6
Aa31LG1G27160 Aethionema arabicum HOM05D004815 ORTHO05D005742 3.6e-104 382.5 378 54.5
CAN.G170.62 Capsicum annuum HOM05D004815 ORTHO05D005742 8.1e-104 381.3 372 52.2
Phvul.010G089200 Phaseolus vulgaris HOM05D004815 ORTHO05D005742 3.1e-103 379.4 348 58.6
HanXRQChr04g0121731 Helianthus annuus HOM05D004815 ORTHO05D005742 5.3e-103 378.6 345 54.2
Zm00001eb208530 Zea mays HOM05D004815 ORTHO05D005742 1.2e-102 377.5 384 50.5
vmacro13348 Vaccinium macrocarpon HOM05D004815 ORTHO05D005742 1.5e-102 377.1 400 52.0
Carub.0004s2834 Capsella rubella HOM05D004815 ORTHO05D005742 4.5e-102 375.6 379 53.6
BcaB01g03258 Brassica carinata HOM05D004815 ORTHO05D005742 5.8e-102 375.2 369 52.3
BcaC02g12192 Brassica carinata HOM05D004815 ORTHO05D005742 5.8e-102 375.2 371 53.4
C03p30200 Brassica napus HOM05D004815 ORTHO05D005742 5.8e-102 375.2 376 52.4
Sp4g27730 Schrenkiella parvula HOM05D004815 ORTHO05D005742 7.6e-102 374.8 377 53.8
BolC4t22283H Brassica oleracea HOM05D004815 ORTHO05D005742 9.9e-102 374.4 371 53.4
BcaC01g05112 Brassica carinata HOM05D004815 ORTHO05D005742 1.7e-101 373.6 374 52.4
Nn1g01309 Nelumbo nucifera HOM05D004815 ORTHO05D005742 1.7e-101 373.6 329 59.6
ClCG06G000170 Citrullus lanatus HOM05D004815 ORTHO05D005742 2.2e-101 373.2 374 53.5
AL4G44860 Arabidopsis lyrata HOM05D004815 ORTHO05D005742 3.8e-101 372.5 378 53.2
Lsat_1_v5_gn_7_8041 Lactuca sativa HOM05D004815 ORTHO05D005742 3.8e-101 372.5 345 53.0
BolC3t15369H Brassica oleracea HOM05D004815 ORTHO05D005742 4.9e-101 372.1 373 52.5
BcaB02g09018 Brassica carinata HOM05D004815 ORTHO05D005742 6.4e-101 371.7 384 52.9
Thhalv10001499m.g Eutrema salsugineum HOM05D004815 ORTHO05D005742 6.4e-101 371.7 374 54.0
Hund27330 Selenicereus undatus HOM05D004815 ORTHO05D005742 8.4e-101 371.3 388 52.1
QL08p050919 Quercus lobata HOM05D004815 ORTHO05D005742 1.4e-100 370.5 330 58.2
A03p25310 Brassica napus HOM05D004815 ORTHO05D005742 9.3e-100 367.9 372 53.0
AT2G45690 Arabidopsis thaliana HOM05D004815 ORTHO05D005742 1.2e-99 367.5 378 52.6
Duzib138G1778 Durio zibethinus HOM05D004815 ORTHO05D005742 7.9e-99 364.8 344 57.3
BraA03t11735Z Brassica rapa HOM05D004815 ORTHO05D005742 3.0e-98 362.8 373 52.5
Peaxi162Scf00021g00232 Petunia axillaris HOM05D004815 ORTHO05D005742 6.7e-98 361.7 349 53.0
HPP92_004960 Vanilla planifolia HOM05D004815 ORTHO05D005742 6.7e-98 361.7 377 50.7
Oeu059223.1 Olea europaea HOM05D003859 ORTHO05D004927 1.1e-97 360.9 376 53.2
Sc02g0002260 Simmondsia chinensis HOM05D004815 ORTHO05D005742 2.5e-97 359.8 360 50.6
FvH4_7g12840 Fragaria vesca HOM05D004815 ORTHO05D005742 1.1e-95 354.4 333 55.3
Ciclev10023945m.g Citrus clementina HOM05D004815 ORTHO05D005742 1.8e-95 353.6 364 53.8
Actinidia09581 Actinidia chinensis HOM05D004815 ORTHO05D005742 6.9e-95 351.7 325 56.0
unitig_749.g14360 Utricularia gibba HOM05D003518 ORTHO05D005164 1.1e-92 344.4 349 53.9
Lalb_Chr01g0021231 Lupinus albus HOM05D004815 ORTHO05D005742 1.4e-92 344.0 386 50.0
C04p06610 Brassica napus HOM05D004815 ORTHO05D005742 3.2e-92 342.8 350 52.3
Prupe.2G152800 Prunus persica HOM05D004815 ORTHO05D005742 4.2e-92 342.4 298 60.1
Solyc06g074460.4 Solanum lycopersicum HOM05D004815 ORTHO05D005742 1.6e-91 340.5 374 46.8
Sopen06g030930 Solanum pennellii HOM05D004815 ORTHO05D005742 3.5e-91 339.3 374 46.5
MD02G1195700 Malus domestica HOM05D004815 ORTHO05D005742 1.9e-89 333.6 332 53.9
AUR62004281 Chenopodium quinoa HOM05D004815 ORTHO05D005742 8.2e-88 328.2 372 48.1
CAN.G919.13 Capsicum annuum HOM05D004815 ORTHO05D005742 2.4e-87 326.6 374 45.5
Nitab4.5_0001901g0030 Nicotiana tabacum HOM05D004815 ORTHO05D005742 7.6e-86 321.6 371 46.6
Os02g0123200 Oryza sativa ssp. japonica HOM05D004815 ORTHO05D005742 1.0e-85 321.2 342 49.7
SEGI_15318 Sequoiadendron giganteum HOM05D004815 ORTHO05D005742 1.9e-84 317.0 374 46.3
Sed0004795 Sechium edule HOM05D004815 ORTHO05D005742 3.2e-84 316.2 299 55.5
Nitab4.5_0005459g0020 Nicotiana tabacum HOM05D004815 ORTHO05D005742 9.3e-84 314.7 395 45.3
Sopen01g037670 Solanum pennellii HOM05D004815 ORTHO05D005742 3.5e-83 312.8 328 50.9
THA.LOC104817269 Tarenaya hassleriana HOM05D004815 ORTHO05D005742 6.1e-83 312.0 335 50.7
Ah.15g094120 Amaranthus hybridus HOM05D001215 ORTHO05D001387 7.9e-83 311.6 386 46.4
Peaxi162Scf00114g00211 Petunia axillaris HOM05D004815 ORTHO05D005742 1.1e-79 301.2 356 46.3
Dinv43746 Davidia involucrata HOM05D004815 ORTHO05D005742 4.1e-71 272.7 286 53.1
Nitab4.5_0001127g0010 Nicotiana tabacum HOM05D004815 ORTHO05D005742 1.0e-69 268.1 380 43.7
AagrBONN_evm.TU.Sc2ySwM_228.5506 Anthoceros agrestis HOM05D004815 ORTHO05D005742 2.2e-69 266.9 383 38.1
CARHR140910 Cardamine hirsuta HOM05D004815 ORTHO05D005742 2.9e-69 266.5 295 53.6
SHI13492 Sapria himalayana HOM05D004815 ORTHO05D005742 8.5e-69 265.0 474 38.2
SMO147G0187 Selaginella moellendorffii HOM05D004815 ORTHO05D005742 2.5e-68 263.5 376 39.4
Mapoly0047s0037 Marchantia polymorpha HOM05D004815 ORTHO05D005742 3.2e-68 263.1 406 37.9
COL.COLO4_12639 Corchorus olitorius HOM05D004815 ORTHO05D005742 1.7e-61 240.7 236 54.2
Eucgr.D02393 Eucalyptus grandis HOM05D004815 ORTHO05D005742 1.5e-60 237.7 242 52.5
CSS0047010 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 7.2e-60 235.3 277 49.5
CSS0023679 Camellia sinensis var. sinensis HOM05D004815 ORTHO05D005742 2.0e-57 227.3 291 46.7
ATR0757G223 Amborella trichopoda HOM05D004815 ORTHO05D005742 3.3e-57 226.5 237 50.6
CDE11G0368 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 5.3e-55 219.2 203 52.2
Dinv32412 Davidia involucrata HOM05D004815 ORTHO05D005742 7.0e-55 218.8 263 48.7
Eucgr.D02410 Eucalyptus grandis HOM05D004815 ORTHO05D005742 2.2e-53 213.8 242 48.8
Pp3c20_6130 Physcomitrium patens HOM05D004815 ORTHO05D005742 2.5e-52 210.3 331 36.9
AagrBONN_evm.TU.Sc2ySwM_369.172 Anthoceros agrestis HOM05D004815 ORTHO05D005742 1.2e-51 208.0 377 33.4
Gohir.A11G084200 Gossypium hirsutum HOM05D004815 ORTHO05D005742 2.2e-48 197.2 249 47.8
PGSC0003DMG400007146 Solanum tuberosum HOM05D004815 ORTHO05D005742 2.4e-47 193.7 264 42.0
ATR0757G181 Amborella trichopoda HOM05D004815 ORTHO05D005742 1.2e-43 181.4 153 58.2
CDE11G0585 Ceratophyllum demersum HOM05D004815 ORTHO05D005742 4.4e-41 172.9 139 59.0
Eucgr.D02397 Eucalyptus grandis HOM05D004815 ORTHO05D005742 8.3e-40 168.7 214 46.3
FAN10G0991 Fragaria x ananassa HOM05D004815 ORTHO05D005742 8.3e-40 168.7 118 65.3
PRCOL_00005618 Prasinoderma coloniale HOM05D004815 ORTHO05D005742 7.3e-28 129.0 421 24.5
Glyma.04G148600 Glycine max HOM05D004815 ORTHO05D005742 3.7e-24 116.7 72 73.6
Aa31LG6G10720 Aethionema arabicum HOM05D004815 ORTHO05D005742 4.9e-24 116.3 152 47.4
CBR_g3181 Chara braunii HOM05D004815 ORTHO05D005742 8.6e-21 105.5 211 28.9
Aa31sc1021G10 Aethionema arabicum HOM05D004815 ORTHO05D005742 8.3e-16 89.0 123 40.7
COL.COLO4_24134 Corchorus olitorius HOM05D000638 ORTHO05D000801 6.0e-14 82.8 86 54.7
Lj3g0018651 Lotus japonicus HOM05D004815 ORTHO05D005742 1.5e-12 78.2 42 83.3
MBI11_g13051_MAGBIO Magnolia biondii HOM05D004815 ORTHO05D005742 2.1e-11 74.3 57 61.4


User provided reference genes

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