Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2785 Papaver somniferum HOM05D007260 ORTHO05D009149 8.1e-120 433.7 215 100.0
PSO063G4612 Papaver somniferum HOM05D007260 ORTHO05D009149 1.1e-103 380.2 274 73.7
Nn2g15147 Nelumbo nucifera HOM05D007260 ORTHO05D009149 7.8e-54 214.5 204 55.9
Cfa016789 Carpinus fangiana HOM05D007260 ORTHO05D009149 6.2e-51 204.9 198 53.0
TAR633G2662 Trochodendron aralioides HOM05D007260 ORTHO05D009149 6.2e-51 204.9 205 54.6
Duzib106G0310 Durio zibethinus HOM05D007260 ORTHO05D009149 8.0e-51 204.5 197 55.8
TWI74G0992 Tripterygium wilfordii HOM05D007260 ORTHO05D009149 3.1e-50 202.6 187 54.5
CiPaw.10G035100 Carya illinoinensis HOM05D007260 ORTHO05D009149 5.2e-50 201.8 188 54.8
Gorai.003G087400 Gossypium raimondii HOM05D007260 ORTHO05D009149 2.6e-49 199.5 195 52.8
QL07p003043 Quercus lobata HOM05D007260 ORTHO05D009149 2.6e-49 199.5 189 53.4
Gohir.D03G072400 Gossypium hirsutum HOM05D007260 ORTHO05D009149 5.8e-49 198.4 195 52.8
COL.COLO4_22299 Corchorus olitorius HOM05D007260 ORTHO05D009149 7.5e-49 198.0 195 54.4
Gohir.A02G107109 Gossypium hirsutum HOM05D007260 ORTHO05D009149 7.5e-49 198.0 195 52.8
SalBow6G2074 Salvia bowleyana HOM05D007260 ORTHO05D009149 1.7e-48 196.8 200 50.0
CANSAT80G0389 Cannabis sativa HOM05D007260 ORTHO05D009149 3.7e-48 195.7 187 52.9
MD14G1076800 Malus domestica HOM05D007260 ORTHO05D009149 3.7e-48 195.7 186 52.7
ClCG04G003650 Citrullus lanatus HOM05D007260 ORTHO05D009149 4.9e-48 195.3 188 53.2
SalBow6G0663 Salvia bowleyana HOM05D007260 ORTHO05D009149 4.9e-48 195.3 200 50.0
Sabra06G0031900 Salix brachista HOM05D007260 ORTHO05D009149 6.4e-48 194.9 187 55.6
CsaV3_6G012930 Cucumis sativus L. HOM05D007260 ORTHO05D009149 1.1e-47 194.1 187 53.5
Potri.006G046350 Populus trichocarpa HOM05D007260 ORTHO05D009149 1.1e-47 194.1 187 55.1
vmacro21973 Vaccinium macrocarpon HOM05D007260 ORTHO05D009149 1.1e-47 194.1 186 54.8
Ciclev10005732m.g Citrus clementina HOM05D007260 ORTHO05D009149 1.9e-47 193.4 186 55.4
Migut.J01731 Erythranthe guttata HOM05D007260 ORTHO05D009149 2.4e-47 193.0 192 52.1
GSVIVG01033239001 Vitis vinifera HOM05D007260 ORTHO05D009149 2.4e-47 193.0 209 49.8
CANSAT80G1528 Cannabis sativa HOM05D007260 ORTHO05D009149 3.2e-47 192.6 187 51.9
Eucgr.K01719 Eucalyptus grandis HOM05D007260 ORTHO05D009149 7.0e-47 191.4 186 51.6
Thecc.05G151300 Theobroma cacao HOM05D007260 ORTHO05D009149 7.0e-47 191.4 186 53.8
Lj1C1126T6 Lonicera japonica HOM05D007260 ORTHO05D009149 1.2e-46 190.7 202 51.0
Eucgr.K02009 Eucalyptus grandis HOM05D007260 ORTHO05D009149 2.7e-46 189.5 186 52.2
MBI13_g10219_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 1.7e-45 186.8 191 50.8
Sed0015422 Sechium edule HOM05D007260 ORTHO05D009149 5.0e-45 185.3 187 51.9
RcHm_v2.0_Chr3g0483391 Rosa chinensis HOM05D007260 ORTHO05D009149 6.6e-45 184.9 206 49.0
DCAR_020507 Daucus carota HOM05D007260 ORTHO05D009149 8.6e-45 184.5 157 58.0
Cc06_g17880 Coffea canephora HOM05D007260 ORTHO05D009149 2.5e-44 183.0 203 50.7
Aqoxy1G00296 Aquilegia oxysepala HOM05D007260 ORTHO05D009149 3.3e-44 182.6 206 51.9
VMungo1309G2091 Vigna mungo HOM05D007260 ORTHO05D009149 3.3e-44 182.6 184 53.8
MSTRG.19844 Avicennia marina HOM05D007260 ORTHO05D009149 4.3e-44 182.2 185 53.0
Ah.13g076600 Amaranthus hybridus HOM05D007260 ORTHO05D009149 5.6e-44 181.8 207 47.3
EL10Ac3g07131 Beta vulgaris HOM05D007260 ORTHO05D009149 5.6e-44 181.8 207 45.4
ECA248G0818 Erigeron canadensis HOM05D007260 ORTHO05D009149 5.6e-44 181.8 190 48.9
Atru.chr1.1150 Acer truncatum HOM05D007260 ORTHO05D009149 9.5e-44 181.0 201 48.8
Glyma.19G136500 Glycine max HOM05D007260 ORTHO05D009149 1.6e-43 180.3 190 49.5
Lsat_1_v5_gn_5_160501 Lactuca sativa HOM05D007260 ORTHO05D009149 3.6e-43 179.1 187 50.3
Glyma.03G134300 Glycine max HOM05D007260 ORTHO05D009149 8.1e-43 177.9 190 48.9
Oeu023130.1 Olea europaea HOM05D007260 ORTHO05D009149 1.4e-42 177.2 199 48.2
Ca_08430_v3 Cicer arietinum L. HOM05D007260 ORTHO05D009149 1.8e-42 176.8 184 52.2
Lalb_Chr01g0017381 Lupinus albus HOM05D007260 ORTHO05D009149 1.8e-42 176.8 184 50.5
Phvul.008G158118 Phaseolus vulgaris HOM05D007260 ORTHO05D009149 1.8e-42 176.8 184 52.7
FvH4_6g24410 Fragaria vesca HOM05D007260 ORTHO05D009149 2.3e-42 176.4 188 49.5
MBI13_g36811_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 5.2e-42 175.3 208 48.6
AUR62024501 Chenopodium quinoa HOM05D007260 ORTHO05D009149 8.9e-42 174.5 185 49.7
Lj1g0013385 Lotus japonicus HOM05D007260 ORTHO05D009149 8.9e-42 174.5 210 47.1
AUR62026087 Chenopodium quinoa HOM05D007260 ORTHO05D009149 1.5e-41 173.7 207 45.9
arahy.Tifrunner.gnm1.ann1.QMP5TS Arachis hypogaea HOM05D007260 ORTHO05D009149 2.6e-41 172.9 187 48.7
Psat3g074400 Pisum sativum HOM05D007260 ORTHO05D009149 4.4e-41 172.2 183 50.3
arahy.Tifrunner.gnm1.ann1.HX298U Arachis hypogaea HOM05D007260 ORTHO05D009149 5.8e-41 171.8 187 48.1
HanXRQChr13g0396001 Helianthus annuus HOM05D007260 ORTHO05D009149 2.2e-40 169.9 173 50.3
SGA_v2.0_scaffold105G30380 Striga asiatica HOM05D007260 ORTHO05D009149 2.2e-40 169.9 185 49.7
Medtr7g091050 Medicago truncatula HOM05D007260 ORTHO05D009149 1.1e-39 167.5 184 51.1
Rhsim03G0028400 Rhododendron simsii HOM05D007260 ORTHO05D009149 1.1e-39 167.5 208 42.8
Nitab4.5_0000826g0300 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.4e-39 167.2 215 46.0
Prupe.7G054700 Prunus persica HOM05D007260 ORTHO05D009149 1.9e-39 166.8 207 47.3
TPR.G18237 Trifolium pratense HOM05D007260 ORTHO05D009149 1.9e-39 166.8 196 46.9
Cpa.g.sc182.9 Carica papaya HOM05D007260 ORTHO05D009149 5.4e-39 165.2 190 46.8
Thhalv10017244m.g Eutrema salsugineum HOM05D007260 ORTHO05D009149 7.1e-39 164.9 194 45.4
FAN02G1162 Fragaria x ananassa HOM05D007260 ORTHO05D009149 9.2e-39 164.5 193 47.2
Nitab4.5_0006870g0020 Nicotiana tabacum HOM05D007260 ORTHO05D009149 1.2e-38 164.1 190 47.9
Sp4g23850 Schrenkiella parvula HOM05D007260 ORTHO05D009149 2.1e-38 163.3 208 43.8
AT2G41600 Arabidopsis thaliana HOM05D007260 ORTHO05D009149 4.6e-38 162.2 207 42.0
C04p69130 Brassica napus HOM05D007260 ORTHO05D009149 4.6e-38 162.2 208 45.7
BraA04t18628Z Brassica rapa HOM05D007260 ORTHO05D009149 1.3e-37 160.6 207 44.9
THA.LOC104802057 Tarenaya hassleriana HOM05D007260 ORTHO05D009149 1.3e-37 160.6 195 45.6
A04p31710 Brassica napus HOM05D007260 ORTHO05D009149 1.7e-37 160.2 207 44.4
Aa31LG1G23620 Aethionema arabicum HOM05D007260 ORTHO05D009149 3.9e-37 159.1 203 44.3
BcaC02g07303 Brassica carinata HOM05D007260 ORTHO05D009149 5.1e-37 158.7 208 45.2
BolC4t28410H Brassica oleracea HOM05D007260 ORTHO05D009149 5.1e-37 158.7 208 45.2
CARHR136700 Cardamine hirsuta HOM05D007260 ORTHO05D009149 6.6e-37 158.3 194 44.3
Carub.0004s2386 Capsella rubella HOM05D007260 ORTHO05D009149 1.5e-36 157.1 207 44.9
PGSC0003DMG401012695 Solanum tuberosum HOM05D007260 ORTHO05D009149 5.6e-36 155.2 188 47.3
BcaB06g29191 Brassica carinata HOM05D007260 ORTHO05D009149 7.3e-36 154.8 208 43.8
Hund19138 Selenicereus undatus HOM05D007260 ORTHO05D009149 1.2e-35 154.1 210 41.9
Sc25g0005370 Simmondsia chinensis HOM05D007260 ORTHO05D009149 1.6e-35 153.7 214 43.0
CAN.G676.12 Capsicum annuum HOM05D007260 ORTHO05D009149 3.6e-35 152.5 190 44.7
Manes.09G018400 Manihot esculenta HOM05D007260 ORTHO05D009149 6.2e-35 151.8 194 44.3
AL4G39670 Arabidopsis lyrata HOM05D007260 ORTHO05D009149 2.3e-34 149.8 207 40.6
MELO3C013619.2 Cucumis melo HOM05D007260 ORTHO05D009149 8.9e-34 147.9 136 55.1
CSS0011677 Camellia sinensis var. sinensis HOM05D007260 ORTHO05D009149 2.0e-33 146.7 102 64.7
Actinidia39206 Actinidia chinensis HOM05D007260 ORTHO05D009149 3.8e-32 142.5 161 47.8
Sopen04g008360 Solanum pennellii HOM05D007260 ORTHO05D009149 6.4e-32 141.7 185 43.2
MBI13_g37004_MAGBIO Magnolia biondii HOM05D007260 ORTHO05D009149 8.4e-32 141.4 186 43.5
Hma1.2p1_0110F.1_g052790 Hydrangea macrophylla HOM05D007260 ORTHO05D009149 3.5e-30 136.0 118 59.3
Haze_19810 Corylus avellana HOM05D007260 ORTHO05D009149 6.0e-30 135.2 139 48.9
Haze_19813 Corylus avellana HOM05D007260 ORTHO05D009149 6.0e-30 135.2 139 48.9
Lj1P1128T41 Lonicera japonica HOM05D007260 ORTHO05D009149 8.9e-26 121.3 114 54.4
unitig_8.g3500 Utricularia gibba HOM05D000800 ORTHO05D000658 3.4e-25 119.4 191 38.7
CDE04G0457 Ceratophyllum demersum HOM05D007260 ORTHO05D009149 2.9e-24 116.3 189 37.6
Peaxi162Scf00130g00720 Petunia axillaris HOM05D007260 ORTHO05D009149 2.9e-24 116.3 138 47.1
Solyc04g016250.3 Solanum lycopersicum HOM05D007260 ORTHO05D009149 1.1e-23 114.4 158 40.5
ATR0188G026 Amborella trichopoda HOM05D007260 ORTHO05D009149 1.9e-20 103.6 158 38.6
Os11g0140100 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 6.2e-19 98.6 186 33.3
Zm00001eb405200 Zea mays HOM05D007260 ORTHO05D009149 5.3e-18 95.5 204 33.3
SEGI_00639 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.0e-17 93.6 141 39.7
SEGI_24189 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.0e-17 93.6 141 39.7
SEGI_29096 Sequoiadendron giganteum HOM05D007260 ORTHO05D009149 2.0e-17 93.6 141 39.7
Dinv02794 Davidia involucrata HOM05D007260 ORTHO05D009149 5.4e-15 85.5 90 47.8
SMO197G0050 Selaginella moellendorffii HOM05D001009 ORTHO05D000829 1.3e-11 74.3 163 33.7
Pp3c12_23320 Physcomitrium patens HOM05D001009 ORTHO05D000829 1.6e-11 73.9 204 32.8
Mapoly0001s0479 Marchantia polymorpha HOM05D001009 ORTHO05D000829 5.3e-10 68.9 200 28.5
SGA_v2.0_scaffold5G02758 Striga asiatica HOM05D001009 ORTHO05D000829 2.6e-09 66.6 206 24.8
PGR031G1509 Punica granatum HOM05D001009 ORTHO05D000829 1.7e-08 63.9 204 26.0
Sed0001214 Sechium edule HOM05D001009 ORTHO05D000829 1.7e-08 63.9 207 29.5
Nn8g39766 Nelumbo nucifera HOM05D001009 ORTHO05D000829 2.2e-08 63.5 212 25.0
Os12g0136600 Oryza sativa ssp. japonica HOM05D007260 ORTHO05D009149 6.4e-08 62.0 112 33.9
CiPaw.13G045200 Carya illinoinensis HOM05D005886 ORTHO05D007512 1.1e-07 61.2 163 28.8
Solyc11g006400.2 Solanum lycopersicum HOM05D005886 ORTHO05D007512 3.2e-07 59.7 150 30.0
Sopen11g002300 Solanum pennellii HOM05D005886 ORTHO05D007512 3.2e-07 59.7 150 30.0
Zm00001eb381960 Zea mays HOM05D001009 ORTHO05D000829 3.2e-07 59.7 101 35.6
Aqoxy1G00831 Aquilegia oxysepala HOM05D001009 ORTHO05D000829 4.2e-07 59.3 162 28.4
Haze_20851 Corylus avellana HOM05D001009 ORTHO05D000829 4.2e-07 59.3 202 29.2
Eucgr.E02483 Eucalyptus grandis HOM05D001009 ORTHO05D000829 4.2e-07 59.3 206 25.2
Medtr5g093000 Medicago truncatula HOM05D005886 ORTHO05D007512 5.5e-07 58.9 192 26.6
Nitab4.5_0001454g0100 Nicotiana tabacum HOM05D001009 ORTHO05D000829 5.5e-07 58.9 205 22.9
MD12G1150500 Malus domestica HOM05D001009 ORTHO05D000829 7.1e-07 58.5 209 28.7
Phvul.010G159900 Phaseolus vulgaris HOM05D001009 ORTHO05D000829 7.1e-07 58.5 209 22.5
CANSAT35G1073 Cannabis sativa HOM05D001009 ORTHO05D000829 9.3e-07 58.2 214 26.6
DCAR_025580 Daucus carota HOM05D001009 ORTHO05D000829 9.3e-07 58.2 208 26.0
THA.LOC104812438 Tarenaya hassleriana HOM05D001009 ORTHO05D000829 9.3e-07 58.2 218 25.7
VMungo0331G0712 Vigna mungo HOM05D001009 ORTHO05D000829 9.3e-07 58.2 211 23.7
Manes.07G120600 Manihot esculenta HOM05D001009 ORTHO05D000829 1.2e-06 57.8 209 27.3
Manes.11G064600 Manihot esculenta HOM05D001009 ORTHO05D000829 1.2e-06 57.8 207 25.6
PGSC0003DMG400000991 Solanum tuberosum HOM05D005886 ORTHO05D007512 1.2e-06 57.8 150 29.3
Gohir.D03G096100 Gossypium hirsutum HOM05D005886 ORTHO05D007512 1.6e-06 57.4 162 27.8
Nitab4.5_0001781g0100 Nicotiana tabacum HOM05D005886 ORTHO05D007512 1.6e-06 57.4 178 28.7
BraA03t15159Z Brassica rapa HOM05D001009 ORTHO05D000829 2.1e-06 57.0 214 25.7
PSO210G2336 Papaver somniferum HOM05D001009 ORTHO05D000829 2.1e-06 57.0 73 39.7
Thecc.03G100000 Theobroma cacao HOM05D005886 ORTHO05D007512 2.1e-06 57.0 155 27.7
MSTRG.11173 Avicennia marina HOM05D001009 ORTHO05D000829 2.7e-06 56.6 222 23.9
Ciclev10026378m.g Citrus clementina HOM05D001009 ORTHO05D000829 2.7e-06 56.6 213 23.9
Oeu010366.1 Olea europaea HOM05D001009 ORTHO05D000829 2.7e-06 56.6 211 25.1
PSO339G2987 Papaver somniferum HOM05D001009 ORTHO05D000829 2.7e-06 56.6 219 25.1
CANSAT56G3685 Cannabis sativa HOM05D005886 ORTHO05D007512 3.5e-06 56.2 191 24.6
Nitab4.5_0009423g0010 Nicotiana tabacum HOM05D001009 ORTHO05D000829 3.5e-06 56.2 212 22.6
SGA_v2.0_scaffold2G00985 Striga asiatica HOM05D001009 ORTHO05D000829 3.5e-06 56.2 207 27.5
vmacro10213 Vaccinium macrocarpon HOM05D001009 ORTHO05D000829 3.5e-06 56.2 204 25.5
A03p61150 Brassica napus HOM05D001009 ORTHO05D000829 4.6e-06 55.8 214 26.6
BolC7t46349H Brassica oleracea HOM05D001009 ORTHO05D000829 4.6e-06 55.8 214 26.2
Cfa004262 Carpinus fangiana HOM05D005886 ORTHO05D007512 4.6e-06 55.8 156 29.5
Thhalv10026055m.g Eutrema salsugineum HOM05D001009 ORTHO05D000829 4.6e-06 55.8 214 25.7
Nitab4.5_0011494g0010 Nicotiana tabacum HOM05D005886 ORTHO05D007512 4.6e-06 55.8 152 28.9
Prupe.3G096300 Prunus persica HOM05D001009 ORTHO05D000829 4.6e-06 55.8 203 23.6
CAN.G554.13 Capsicum annuum HOM05D001009 ORTHO05D000829 6.0e-06 55.5 163 28.2
CDE06G2341 Ceratophyllum demersum HOM05D001009 ORTHO05D000829 6.0e-06 55.5 152 28.9
Lj3A922T58 Lonicera japonica HOM05D005886 ORTHO05D007512 6.0e-06 55.5 192 26.6
C07p59010 Brassica napus HOM05D001009 ORTHO05D000829 7.9e-06 55.1 214 26.2
SGA_v2.0_scaffold13G06426 Striga asiatica HOM05D005886 ORTHO05D007512 7.9e-06 55.1 105 32.4


User provided reference genes

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