Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2674 Papaver somniferum HOM05D005277 ORTHO05D006319 2.4e-49 198.4 89 100.0
MBI07_g12793_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.6e-37 159.1 90 83.3
Potri.014G079800 Populus trichocarpa HOM05D005277 ORTHO05D006319 8.0e-37 156.8 90 78.9
THA.LOC104801449 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 8.0e-37 156.8 88 78.4
Actinidia34103 Actinidia chinensis HOM05D005277 ORTHO05D006319 1.0e-36 156.4 91 79.1
Potri.002G155800 Populus trichocarpa HOM05D005277 ORTHO05D006319 1.4e-36 156.0 90 78.9
Actinidia32868 Actinidia chinensis HOM05D005277 ORTHO05D006319 2.3e-36 155.2 91 78.0
CSS0040378 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.0e-36 154.8 92 79.3
FAN01G0371 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-36 154.8 89 79.8
FAN06G3712 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-36 154.8 89 79.8
FAN06G3877 Fragaria x ananassa HOM05D005277 ORTHO05D006319 3.0e-36 154.8 89 79.8
Lsat_1_v5_gn_8_8281 Lactuca sativa HOM05D005277 ORTHO05D006319 3.0e-36 154.8 92 78.3
RcHm_v2.0_Chr1g0353371 Rosa chinensis HOM05D005277 ORTHO05D006319 3.0e-36 154.8 89 79.8
Duzib133G1303 Durio zibethinus HOM05D005277 ORTHO05D006319 5.2e-36 154.1 90 80.0
arahy.Tifrunner.gnm1.ann1.A7XXX8 Arachis hypogaea HOM05D005277 ORTHO05D006319 6.7e-36 153.7 87 73.6
arahy.Tifrunner.gnm1.ann1.I9WHAY Arachis hypogaea HOM05D005277 ORTHO05D006319 6.7e-36 153.7 87 73.6
Nn1g01427 Nelumbo nucifera HOM05D005277 ORTHO05D006319 6.7e-36 153.7 89 77.5
Thhalv10029049m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 8.8e-36 153.3 85 78.8
GSVIVG01026823001 Vitis vinifera HOM05D005277 ORTHO05D006319 8.8e-36 153.3 86 77.9
HanXRQChr02g0054711 Helianthus annuus HOM05D005277 ORTHO05D006319 1.1e-35 152.9 88 79.5
MD01G1052300 Malus domestica HOM05D005277 ORTHO05D006319 1.1e-35 152.9 89 80.9
Sp6g00620 Schrenkiella parvula HOM05D005277 ORTHO05D006319 1.1e-35 152.9 85 80.0
Duzib138G0488 Durio zibethinus HOM05D005277 ORTHO05D006319 1.5e-35 152.5 90 78.9
THA.LOC104817018 Tarenaya hassleriana HOM05D005277 ORTHO05D006319 1.5e-35 152.5 84 82.1
Thecc.01G365200 Theobroma cacao HOM05D005277 ORTHO05D006319 2.0e-35 152.1 89 78.7
CARHR248750 Cardamine hirsuta HOM05D005277 ORTHO05D006319 2.6e-35 151.8 85 77.6
CiPaw.02G027600 Carya illinoinensis HOM05D005277 ORTHO05D006319 2.6e-35 151.8 90 80.0
Thhalv10026679m.g Eutrema salsugineum HOM05D005277 ORTHO05D006319 2.6e-35 151.8 85 77.6
Aa31LG5G410 Aethionema arabicum HOM05D005277 ORTHO05D006319 4.4e-35 151.0 85 77.6
Gohir.D07G149400 Gossypium hirsutum HOM05D005277 ORTHO05D006319 4.4e-35 151.0 87 79.3
Gorai.001G170800 Gossypium raimondii HOM05D005277 ORTHO05D006319 4.4e-35 151.0 87 79.3
FAN03G2608 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.7e-35 150.6 90 78.9
Manes.01G260200 Manihot esculenta HOM05D005277 ORTHO05D006319 5.7e-35 150.6 89 76.4
Oeu021782.1 Olea europaea HOM05D005277 ORTHO05D006319 5.7e-35 150.6 92 77.2
Prupe.2G159900 Prunus persica HOM05D005277 ORTHO05D006319 5.7e-35 150.6 89 80.9
CDE05G2617 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 9.7e-35 149.8 86 79.1
Os09g0560300 Oryza sativa ssp. japonica HOM05D005277 ORTHO05D006319 1.3e-34 149.4 86 79.1
Ciclev10023111m.g Citrus clementina HOM05D005277 ORTHO05D006319 2.2e-34 148.7 88 79.5
Gohir.A07G143600 Gossypium hirsutum HOM05D005277 ORTHO05D006319 2.2e-34 148.7 85 78.8
Gorai.004G156900 Gossypium raimondii HOM05D005277 ORTHO05D006319 2.2e-34 148.7 86 76.7
Lalb_Chr01g0021101 Lupinus albus HOM05D005277 ORTHO05D006319 2.2e-34 148.7 88 76.1
CDE06G0676 Ceratophyllum demersum HOM05D005277 ORTHO05D006319 2.8e-34 148.3 82 80.5
Lalb_Chr19g0127071 Lupinus albus HOM05D005277 ORTHO05D006319 2.8e-34 148.3 90 75.6
Cfa003961 Carpinus fangiana HOM05D005277 ORTHO05D006319 3.7e-34 147.9 90 78.9
Manes.05G038000 Manihot esculenta HOM05D005277 ORTHO05D006319 3.7e-34 147.9 89 75.3
Phvul.008G068800 Phaseolus vulgaris HOM05D005277 ORTHO05D006319 4.8e-34 147.5 88 77.3
A03p65670 Brassica napus HOM05D005277 ORTHO05D006319 6.3e-34 147.1 85 78.8
C07p62700 Brassica napus HOM05D005277 ORTHO05D006319 6.3e-34 147.1 86 77.9
BolC7t46684H Brassica oleracea HOM05D005277 ORTHO05D006319 6.3e-34 147.1 86 77.9
BraA03t15618Z Brassica rapa HOM05D005277 ORTHO05D006319 6.3e-34 147.1 85 78.8
Carub.0006s3664 Capsella rubella HOM05D005277 ORTHO05D006319 6.3e-34 147.1 85 75.3
ClCG11G004150 Citrullus lanatus HOM05D005277 ORTHO05D006319 6.3e-34 147.1 89 79.8
HanXRQChr08g0209231 Helianthus annuus HOM05D005277 ORTHO05D006319 6.3e-34 147.1 89 76.4
Hma1.2p1_2482F.1_g323010 Hydrangea macrophylla HOM05D005277 ORTHO05D006319 6.3e-34 147.1 93 74.2
AL6G52850 Arabidopsis lyrata HOM05D005277 ORTHO05D006319 8.2e-34 146.7 85 75.3
CsaV3_2G015020 Cucumis sativus L. HOM05D005277 ORTHO05D006319 8.2e-34 146.7 89 78.7
Gohir.A08G129800 Gossypium hirsutum HOM05D005277 ORTHO05D006319 8.2e-34 146.7 86 76.7
TPR.G37794 Trifolium pratense HOM05D005277 ORTHO05D006319 1.1e-33 146.4 88 75.0
ECA233G3829 Erigeron canadensis HOM05D005277 ORTHO05D006319 1.4e-33 146.0 90 76.7
Zm00001eb104680 Zea mays HOM05D005277 ORTHO05D006319 1.4e-33 146.0 78 79.5
Lj1g0008169 Lotus japonicus HOM05D005277 ORTHO05D006319 1.8e-33 145.6 87 75.9
MELO3C023322.2 Cucumis melo HOM05D005277 ORTHO05D006319 2.4e-33 145.2 89 76.4
TWI23G0263 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 2.4e-33 145.2 92 76.1
Sed0006100 Sechium edule HOM05D005277 ORTHO05D006319 3.1e-33 144.8 89 75.3
HPP92_016701 Vanilla planifolia HOM05D005277 ORTHO05D006319 3.1e-33 144.8 92 75.0
BcaNung07162 Brassica carinata HOM05D005277 ORTHO05D006319 4.1e-33 144.4 88 76.1
Medtr7g076630 Medicago truncatula HOM05D005277 ORTHO05D006319 4.1e-33 144.4 89 74.2
CiPaw.01G056300 Carya illinoinensis HOM05D005277 ORTHO05D006319 5.3e-33 144.1 90 76.7
Solyc03g025910.3 Solanum lycopersicum HOM05D005277 ORTHO05D006319 5.3e-33 144.1 90 76.7
Sopen03g004720 Solanum pennellii HOM05D005277 ORTHO05D006319 5.3e-33 144.1 90 76.7
PGSC0003DMG400014288 Solanum tuberosum HOM05D005277 ORTHO05D006319 5.3e-33 144.1 90 76.7
Aqoxy7G00369 Aquilegia oxysepala HOM05D005277 ORTHO05D006319 7.0e-33 143.7 88 77.3
PGR042G3267 Punica granatum HOM05D005277 ORTHO05D006319 7.0e-33 143.7 90 75.6
Sc23g0003110 Simmondsia chinensis HOM05D005277 ORTHO05D006319 7.0e-33 143.7 86 75.6
EL10Ac1g00522 Beta vulgaris HOM05D005277 ORTHO05D006319 9.1e-33 143.3 87 73.6
A03p32120 Brassica napus HOM05D005277 ORTHO05D006319 9.1e-33 143.3 88 76.1
BraA03t12382Z Brassica rapa HOM05D005277 ORTHO05D006319 9.1e-33 143.3 88 76.1
CANSAT56G2015 Cannabis sativa HOM05D005277 ORTHO05D006319 9.1e-33 143.3 90 77.8
COL.COLO4_12662 Corchorus olitorius HOM05D005277 ORTHO05D006319 9.1e-33 143.3 86 74.4
AT4G00585 Arabidopsis thaliana HOM05D005277 ORTHO05D006319 1.2e-32 142.9 85 74.1
Glyma.09G263000 Glycine max HOM05D005277 ORTHO05D006319 1.6e-32 142.5 88 73.9
Gohir.D08G151200 Gossypium hirsutum HOM05D005277 ORTHO05D006319 1.6e-32 142.5 88 75.0
TWI59G0525 Tripterygium wilfordii HOM05D005277 ORTHO05D006319 1.6e-32 142.5 92 73.9
BcaC04g24159 Brassica carinata HOM05D005277 ORTHO05D006319 2.0e-32 142.1 88 75.0
A09p00410 Brassica napus HOM05D005277 ORTHO05D006319 2.0e-32 142.1 88 75.0
BolC3t16185H Brassica oleracea HOM05D005277 ORTHO05D006319 2.6e-32 141.7 87 75.9
Nitab4.5_0000080g0040 Nicotiana tabacum HOM05D005277 ORTHO05D006319 2.6e-32 141.7 90 74.4
Psat3g111720 Pisum sativum HOM05D005277 ORTHO05D006319 4.5e-32 141.0 88 71.6
Hund16947 Selenicereus undatus HOM05D005277 ORTHO05D006319 4.5e-32 141.0 86 73.3
vmacro06693 Vaccinium macrocarpon HOM05D005277 ORTHO05D006319 4.5e-32 141.0 91 73.6
BcaB01g02260 Brassica carinata HOM05D005277 ORTHO05D006319 5.9e-32 140.6 88 73.9
Migut.F00352 Erythranthe guttata HOM05D005277 ORTHO05D006319 7.7e-32 140.2 89 74.2
BcaC01g06868 Brassica carinata HOM05D005277 ORTHO05D006319 1.0e-31 139.8 86 75.6
Glyma.18G229200 Glycine max HOM05D005277 ORTHO05D006319 1.0e-31 139.8 88 72.7
Peaxi162Scf01969g00020 Petunia axillaris HOM05D005277 ORTHO05D006319 1.0e-31 139.8 89 74.2
Sed0005058 Sechium edule HOM05D005277 ORTHO05D006319 2.2e-31 138.7 86 75.6
Ca_07884_v3 Cicer arietinum L. HOM05D005277 ORTHO05D006319 3.8e-31 137.9 88 72.7
Nitab4.5_0000716g0150 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.8e-31 137.9 90 72.2
Nitab4.5_0003365g0020 Nicotiana tabacum HOM05D005277 ORTHO05D006319 3.8e-31 137.9 90 72.2
BcaNung05357 Brassica carinata HOM05D005277 ORTHO05D006319 5.0e-31 137.5 86 74.4
Peaxi162Scf00915g00031 Petunia axillaris HOM05D005277 ORTHO05D006319 8.5e-31 136.7 90 72.2
Cc00_g02540 Coffea canephora HOM05D005277 ORTHO05D006319 1.1e-30 136.3 82 78.0
DCAR_018191 Daucus carota HOM05D005277 ORTHO05D006319 1.1e-30 136.3 81 76.5
C03p39140 Brassica napus HOM05D005277 ORTHO05D006319 1.9e-30 135.6 81 75.3
Sc02g0002070 Simmondsia chinensis HOM05D003698 ORTHO05D004320 3.6e-29 131.3 77 75.3
AUR62004311 Chenopodium quinoa HOM05D005277 ORTHO05D006319 4.7e-29 131.0 89 68.5
AUR62022763 Chenopodium quinoa HOM05D005277 ORTHO05D006319 3.0e-28 128.3 89 67.4
Cc02_g03110 Coffea canephora HOM05D005277 ORTHO05D006319 3.3e-27 124.8 66 83.3
GSVIVG01010541001 Vitis vinifera HOM05D005277 ORTHO05D006319 2.8e-26 121.7 66 81.8
SalBow2G0266 Salvia bowleyana HOM05D005277 ORTHO05D006319 2.4e-25 118.6 105 59.0
Rhsim03G0179700 Rhododendron simsii HOM05D005277 ORTHO05D006319 2.0e-24 115.5 161 42.9
MBI06_g06483_MAGBIO Magnolia biondii HOM05D005277 ORTHO05D006319 1.7e-23 112.5 63 82.5
Pp3c7_13700 Physcomitrium patens HOM05D005277 ORTHO05D006319 5.0e-23 110.9 79 63.3
Mapoly0023s0078 Marchantia polymorpha HOM05D005277 ORTHO05D006319 1.5e-22 109.4 82 64.6
Sp7g35520 Schrenkiella parvula HOM05D002845 ORTHO05D006319 4.2e-22 107.8 87 60.9
Sabra14G0058000 Salix brachista HOM05D005277 ORTHO05D006319 5.5e-22 107.5 63 76.2
RcHm_v2.0_Chr1g0353261 Rosa chinensis HOM05D005277 ORTHO05D006319 9.4e-22 106.7 63 76.2
QL08p049830 Quercus lobata HOM05D005277 ORTHO05D006319 1.6e-21 105.9 62 75.8
RcHm_v2.0_Chr1g0353351 Rosa chinensis HOM05D005277 ORTHO05D006319 2.1e-21 105.5 62 75.8
Atru.chr5.442 Acer truncatum HOM05D005277 ORTHO05D006319 8.0e-21 103.6 62 77.4
Haze_15461 Corylus avellana HOM05D005277 ORTHO05D006319 1.4e-20 102.8 64 76.6
Hund27308 Selenicereus undatus HOM05D005277 ORTHO05D006319 1.8e-20 102.4 63 71.4
Cpa.g.c32742 Carica papaya HOM05D005277 ORTHO05D006319 5.2e-20 100.9 61 70.5
Zm00001eb320330 Zea mays HOM05D005277 ORTHO05D006319 6.8e-20 100.5 57 75.4
Ah.05g176400 Amaranthus hybridus HOM05D005277 ORTHO05D006319 8.8e-20 100.1 61 72.1
SMO203G0011 Selaginella moellendorffii HOM05D005277 ORTHO05D006319 2.0e-19 99.0 67 62.7
RcHm_v2.0_Chr0c39g0503241 Rosa chinensis HOM05D005277 ORTHO05D006319 3.4e-19 98.2 61 75.4
RcHm_v2.0_Chr1g0353201 Rosa chinensis HOM05D005277 ORTHO05D006319 3.4e-19 98.2 61 75.4
ATR0721G079 Amborella trichopoda HOM05D005277 ORTHO05D006319 5.7e-19 97.4 59 71.2
SHI13469 Sapria himalayana HOM05D005277 ORTHO05D006319 7.5e-19 97.1 61 68.9
unitig_0.g2484 Utricularia gibba HOM05D002154 ORTHO05D002362 7.5e-19 97.1 62 72.6
HPP92_028083 Vanilla planifolia HOM05D005277 ORTHO05D006319 7.5e-19 97.1 66 69.7
CSS0022794 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 3.7e-18 94.7 80 55.0
ATR0763G077 Amborella trichopoda HOM05D005277 ORTHO05D006319 4.8e-18 94.4 58 70.7
Nitab4.5_0008315g0010 Nicotiana tabacum HOM05D005277 ORTHO05D006319 6.3e-18 94.0 63 68.3
C09p00490 Brassica napus HOM05D005277 ORTHO05D006319 8.3e-18 93.6 61 72.1
BraA09t35720Z Brassica rapa HOM05D005277 ORTHO05D006319 8.3e-18 93.6 61 72.1
ATR0174G019 Amborella trichopoda HOM05D005277 ORTHO05D006319 1.4e-17 92.8 58 70.7
BolC9t52983H Brassica oleracea HOM05D005277 ORTHO05D006319 3.1e-17 91.7 46 84.8
BcaNung05359 Brassica carinata HOM05D005277 ORTHO05D006319 4.1e-17 91.3 60 71.7
AagrBONN_evm.TU.Sc2ySwM_369.4 Anthoceros agrestis HOM05D005277 ORTHO05D006319 2.7e-16 88.6 81 50.6
CSS0038928 Camellia sinensis var. sinensis HOM05D005277 ORTHO05D006319 5.9e-16 87.4 64 64.1
FAN10G1490 Fragaria x ananassa HOM05D005277 ORTHO05D006319 5.5e-14 80.9 39 87.2
PRCOL_00003506 Prasinoderma coloniale HOM05D005277 ORTHO05D006319 1.6e-13 79.3 66 54.5
MCO13G435 Micromonas commoda HOM05D005277 ORTHO05D006319 1.2e-11 73.2 67 53.7


User provided reference genes

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