Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G2658 Papaver somniferum HOM05D004645 ORTHO05D005693 3.6e-155 552.0 372 100.0
PSO063G6220 Papaver somniferum HOM05D004645 ORTHO05D005693 2.4e-151 539.3 374 98.4
TAR629G2315 Trochodendron aralioides HOM05D004645 ORTHO05D005693 7.7e-118 427.9 323 83.9
Aqoxy5G00549 Aquilegia oxysepala HOM05D004645 ORTHO05D005693 6.6e-109 398.3 331 77.6
TAR633G2534 Trochodendron aralioides HOM05D004645 ORTHO05D005693 1.9e-108 396.7 241 83.4
GSVIVG01024286001 Vitis vinifera HOM05D004645 ORTHO05D005693 5.4e-103 378.6 252 78.2
CiPaw.05G212200 Carya illinoinensis HOM05D004645 ORTHO05D005693 7.0e-103 378.3 321 71.3
CiPaw.06G036400 Carya illinoinensis HOM05D004645 ORTHO05D005693 1.6e-102 377.1 322 74.8
Glyma.12G014000 Glycine max HOM05D004645 ORTHO05D005693 3.0e-101 372.9 321 72.0
Glyma.09G223000 Glycine max HOM05D004645 ORTHO05D005693 8.6e-101 371.3 324 71.9
VMungo1127G1262 Vigna mungo HOM05D004645 ORTHO05D005693 1.5e-100 370.5 325 70.5
Lj1g0014871 Lotus japonicus HOM05D004645 ORTHO05D005693 9.5e-100 367.9 321 71.3
CANSAT21G0324 Cannabis sativa HOM05D004645 ORTHO05D005693 1.2e-99 367.5 325 74.8
Phvul.011G016900 Phaseolus vulgaris HOM05D004645 ORTHO05D005693 1.2e-99 367.5 326 72.1
RcHm_v2.0_Chr1g0384691 Rosa chinensis HOM05D004645 ORTHO05D005693 2.1e-99 366.7 323 72.1
FAN10G3994 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.8e-99 366.3 321 70.1
Thecc.05G223300 Theobroma cacao HOM05D004645 ORTHO05D005693 3.6e-99 365.9 328 74.7
Gohir.D03G055700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 4.7e-99 365.5 334 73.1
Manes.09G130100 Manihot esculenta HOM05D004645 ORTHO05D005693 4.7e-99 365.5 326 69.9
FvH4_7g34300 Fragaria vesca HOM05D004645 ORTHO05D005693 8.0e-99 364.8 326 73.0
Gohir.A02G114700 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.0e-98 364.4 334 73.1
Hma1.2p1_0419F.1_g149550 Hydrangea macrophylla HOM05D004645 ORTHO05D005693 1.4e-98 364.0 247 77.3
Actinidia33801 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.8e-98 363.6 330 73.6
Ciclev10031859m.g Citrus clementina HOM05D004645 ORTHO05D005693 1.8e-98 363.6 326 74.8
Gorai.003G058500 Gossypium raimondii HOM05D004645 ORTHO05D005693 3.1e-98 362.8 337 72.4
Prupe.2G329500 Prunus persica HOM05D004645 ORTHO05D005693 5.2e-98 362.1 329 75.1
CSS0046309 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 8.9e-98 361.3 324 75.6
Dinv01810 Davidia involucrata HOM05D004645 ORTHO05D005693 1.5e-97 360.5 336 75.3
Medtr0004s0240 Medicago truncatula HOM05D004645 ORTHO05D005693 3.4e-97 359.4 326 71.8
arahy.Tifrunner.gnm1.ann1.3IB4NC Arachis hypogaea HOM05D004645 ORTHO05D005693 4.4e-97 359.0 343 70.8
arahy.Tifrunner.gnm1.ann1.7F5N7U Arachis hypogaea HOM05D004645 ORTHO05D005693 4.4e-97 359.0 343 70.8
Atru.chr12.1851 Acer truncatum HOM05D004645 ORTHO05D005693 1.7e-96 357.1 327 74.6
Hund09812 Selenicereus undatus HOM05D004645 ORTHO05D005693 1.7e-96 357.1 250 75.6
MD01G1239600 Malus domestica HOM05D004645 ORTHO05D005693 2.2e-96 356.7 321 69.2
Duzib177G0889 Durio zibethinus HOM05D004645 ORTHO05D005693 2.9e-96 356.3 248 74.2
CSS0029852 Camellia sinensis var. sinensis HOM05D004645 ORTHO05D005693 3.7e-96 355.9 332 75.0
Gohir.A13G158000 Gossypium hirsutum HOM05D004645 ORTHO05D005693 3.2e-95 352.8 326 75.2
FAN03G2055 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.7e-94 349.7 351 70.9
Duzib128G1942 Durio zibethinus HOM05D004645 ORTHO05D005693 1.0e-93 347.8 334 69.2
Lj5g0009502 Lotus japonicus HOM05D004645 ORTHO05D005693 1.3e-93 347.4 321 72.3
Potri.019G042800 Populus trichocarpa HOM05D004645 ORTHO05D005693 1.1e-92 344.4 256 71.1
TWI60G0474 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 2.5e-92 343.2 333 66.7
CDE04G1041 Ceratophyllum demersum HOM05D004645 ORTHO05D005693 2.1e-91 340.1 323 60.4
Gohir.D13G162500 Gossypium hirsutum HOM05D004645 ORTHO05D005693 1.1e-90 337.8 326 71.8
Potri.013G076800 Populus trichocarpa HOM05D004645 ORTHO05D005693 8.9e-90 334.7 326 60.1
PGR119G0624 Punica granatum HOM05D004645 ORTHO05D005693 9.8e-89 331.3 324 69.4
Manes.08G160200 Manihot esculenta HOM05D004645 ORTHO05D005693 2.2e-88 330.1 329 63.2
Nitab4.5_0009278g0030 Nicotiana tabacum HOM05D004645 ORTHO05D005693 4.9e-88 328.9 330 58.2
C09p59630 Brassica napus HOM05D004645 ORTHO05D005693 6.4e-88 328.6 322 64.3
A10p21880 Brassica napus HOM05D004645 ORTHO05D005693 8.3e-88 328.2 328 65.9
BraA10t44247Z Brassica rapa HOM05D004645 ORTHO05D005693 8.3e-88 328.2 328 65.9
Sed0013778 Sechium edule HOM05D004645 ORTHO05D005693 8.3e-88 328.2 323 71.8
BolC9t58802H Brassica oleracea HOM05D004645 ORTHO05D005693 1.1e-87 327.8 322 64.3
CAN.G732.33 Capsicum annuum HOM05D004645 ORTHO05D005693 1.1e-87 327.8 325 64.3
BcaC04g18782 Brassica carinata HOM05D004645 ORTHO05D005693 1.4e-87 327.4 323 64.1
Peaxi162Scf00516g00425 Petunia axillaris HOM05D004645 ORTHO05D005693 1.4e-87 327.4 323 69.3
MSTRG.26920 Avicennia marina HOM05D004645 ORTHO05D005693 1.9e-87 327.0 328 58.2
BcaB08g36765 Brassica carinata HOM05D004645 ORTHO05D005693 1.9e-87 327.0 326 63.2
THA.LOC104820831 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 2.4e-87 326.6 324 60.5
MELO3C014340.2 Cucumis melo HOM05D004645 ORTHO05D005693 4.1e-87 325.9 333 70.6
Solyc03g097300.4 Solanum lycopersicum HOM05D004645 ORTHO05D005693 4.1e-87 325.9 326 62.0
Sopen03g028070 Solanum pennellii HOM05D004645 ORTHO05D005693 4.1e-87 325.9 326 62.0
Sp6g26710 Schrenkiella parvula HOM05D004645 ORTHO05D005693 5.4e-87 325.5 330 62.1
ClCG09G013170 Citrullus lanatus HOM05D004645 ORTHO05D005693 1.2e-86 324.3 329 70.2
AT5G17510 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.6e-86 323.9 324 63.0
Cc02_g00050 Coffea canephora HOM05D004645 ORTHO05D005693 1.6e-86 323.9 331 60.7
Lalb_Chr03g0037841 Lupinus albus HOM05D004645 ORTHO05D005693 2.7e-86 323.2 328 64.0
Aa31LG11G12160 Aethionema arabicum HOM05D004645 ORTHO05D005693 4.6e-86 322.4 323 61.6
AL6G28600 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 4.6e-86 322.4 322 64.3
PGSC0003DMG400026490 Solanum tuberosum HOM05D004645 ORTHO05D005693 7.8e-86 321.6 329 62.6
HanXRQChr14g0434641 Helianthus annuus HOM05D004645 ORTHO05D005693 1.0e-85 321.2 328 57.9
Carub.0006s1574 Capsella rubella HOM05D004645 ORTHO05D005693 1.3e-85 320.9 328 63.1
ECA238G1292 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.3e-85 320.9 248 69.8
Lalb_Chr19g0140101 Lupinus albus HOM05D004645 ORTHO05D005693 1.7e-85 320.5 320 56.6
Oeu028988.1 Olea europaea HOM05D004645 ORTHO05D005693 3.0e-85 319.7 323 60.4
Nitab4.5_0000021g0850 Nicotiana tabacum HOM05D004645 ORTHO05D005693 8.6e-85 318.2 254 65.4
CsaV3_6G036830 Cucumis sativus L. HOM05D004645 ORTHO05D005693 1.5e-84 317.4 253 70.0
Migut.L00703 Erythranthe guttata HOM05D004645 ORTHO05D005693 5.6e-84 315.5 349 58.2
Sabra19G0053400 Salix brachista HOM05D004645 ORTHO05D005693 2.8e-83 313.2 288 60.8
Lj3C883G6 Lonicera japonica HOM05D000507 ORTHO05D000416 3.6e-83 312.8 249 69.9
HanXRQChr11g0333681 Helianthus annuus HOM05D004645 ORTHO05D005693 1.1e-82 311.2 328 57.3
Lsat_1_v5_gn_8_3080 Lactuca sativa HOM05D004645 ORTHO05D005693 1.8e-82 310.5 322 60.9
Oeu027899.1 Olea europaea HOM05D004645 ORTHO05D005693 2.3e-82 310.1 325 62.2
TWI32G1082 Tripterygium wilfordii HOM05D004645 ORTHO05D005693 3.1e-82 309.7 322 69.3
THA.LOC104802906 Tarenaya hassleriana HOM05D004645 ORTHO05D005693 5.2e-82 308.9 324 55.2
Gorai.013G184600 Gossypium raimondii HOM05D004645 ORTHO05D005693 2.0e-81 307.0 328 68.0
Os12g0465700 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 7.6e-81 305.1 321 56.1
Thhalv10013879m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.9e-80 303.1 324 61.1
CARHR195680 Cardamine hirsuta HOM05D004645 ORTHO05D005693 1.1e-79 301.2 326 63.2
TPR.G9835 Trifolium pratense HOM05D004645 ORTHO05D005693 1.2e-78 297.7 323 66.9
COL.COLO4_15124 Corchorus olitorius HOM05D004645 ORTHO05D005693 2.7e-78 296.6 217 73.3
QL09p020526 Quercus lobata HOM05D004645 ORTHO05D005693 1.0e-77 294.7 215 75.8
Haze_00365 Corylus avellana HOM05D004645 ORTHO05D005693 3.9e-77 292.7 216 73.6
unitig_92.g28227 Utricularia gibba HOM05D004645 ORTHO05D005693 2.8e-75 286.6 242 64.0
Ca_19601_v3 Cicer arietinum L. HOM05D004645 ORTHO05D005693 1.4e-74 284.3 219 72.1
SHI15009 Sapria himalayana HOM05D004645 ORTHO05D005693 1.8e-74 283.9 253 63.6
SGA_v2.0_scaffold18G08211 Striga asiatica HOM05D004645 ORTHO05D005693 7.6e-73 278.5 344 54.4
AUR62028214 Chenopodium quinoa HOM05D004645 ORTHO05D005693 6.4e-72 275.4 250 62.4
ATR0582G008 Amborella trichopoda HOM05D004645 ORTHO05D005693 1.6e-70 270.8 323 52.0
HPP92_006448 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.1e-70 270.4 333 64.0
HanXRQChr05g0156891 Helianthus annuus HOM05D004645 ORTHO05D005693 6.0e-70 268.9 246 63.0
ECA233G1188 Erigeron canadensis HOM05D004645 ORTHO05D005693 1.0e-69 268.1 242 61.2
DCAR_010525 Daucus carota HOM05D004645 ORTHO05D005693 3.0e-69 266.5 228 66.2
EL10Ac3g05041 Beta vulgaris HOM05D004645 ORTHO05D005693 2.5e-68 263.5 400 47.8
vmacro06368 Vaccinium macrocarpon HOM05D004645 ORTHO05D005693 2.5e-68 263.5 232 68.1
Thhalv10020936m.g Eutrema salsugineum HOM05D004645 ORTHO05D005693 2.8e-67 260.0 348 55.2
AUR62002096 Chenopodium quinoa HOM05D004645 ORTHO05D005693 8.1e-67 258.5 254 59.4
Aa31LG5G13980 Aethionema arabicum HOM05D000507 ORTHO05D000416 1.7e-64 250.8 255 55.7
Lj3g0007707 Lotus japonicus HOM05D004645 ORTHO05D005693 1.1e-63 248.1 207 66.7
Ah.04g156130 Amaranthus hybridus HOM05D004645 ORTHO05D005693 1.9e-63 247.3 338 54.4
DCAR_014580 Daucus carota HOM05D004645 ORTHO05D005693 1.6e-62 244.2 246 56.1
Sc08g0005180 Simmondsia chinensis HOM05D004645 ORTHO05D005693 7.9e-62 241.9 219 68.0
Cfa016080 Carpinus fangiana HOM05D004645 ORTHO05D005693 1.3e-61 241.1 190 70.0
AL3G13140 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.8e-61 240.7 325 51.4
Sp3g02460 Schrenkiella parvula HOM05D004645 ORTHO05D005693 1.8e-61 240.7 248 56.0
Carub.0003s0260 Capsella rubella HOM05D004645 ORTHO05D005693 3.3e-60 236.5 339 49.6
SEGI_39287 Sequoiadendron giganteum HOM05D004645 ORTHO05D005693 9.6e-60 235.0 262 51.9
Rhsim03G0224700 Rhododendron simsii HOM05D004645 ORTHO05D005693 2.1e-59 233.8 337 59.9
AT3G03460 Arabidopsis thaliana HOM05D004645 ORTHO05D005693 1.2e-57 228.0 330 52.1
BNapus_Darmor_BZH_scaffold_162p00170 Brassica napus HOM05D004645 ORTHO05D005693 6.4e-56 222.2 253 54.5
BolC1t05829H Brassica oleracea HOM05D004645 ORTHO05D005693 6.4e-56 222.2 253 54.5
A06p26400 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-53 214.5 256 53.1
BNapus_Darmor_BZH_scaffold_78p00150 Brassica napus HOM05D004645 ORTHO05D005693 1.3e-53 214.5 256 53.1
BraA01t04578Z Brassica rapa HOM05D004645 ORTHO05D005693 3.0e-53 213.4 256 53.1
HPP92_027983 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.1e-51 207.2 212 71.2
BcaC09g47748 Brassica carinata HOM05D004645 ORTHO05D005693 8.2e-51 205.3 249 52.6
TAR636G0353 Trochodendron aralioides HOM05D004645 ORTHO05D005693 2.1e-46 190.7 134 79.1
FAN01G0394 Fragaria x ananassa HOM05D004645 ORTHO05D005693 1.0e-40 171.8 102 85.3
Psat7g154680 Pisum sativum HOM05D004645 ORTHO05D005693 8.7e-37 158.7 147 61.9
CARHR077490 Cardamine hirsuta HOM05D004645 ORTHO05D005693 4.3e-36 156.4 222 49.1
Mapoly0012s0180 Marchantia polymorpha HOM05D004645 ORTHO05D005693 2.2e-32 144.1 160 48.1
AagrBONN_evm.TU.Sc2ySwM_228.1766 Anthoceros agrestis HOM05D004645 ORTHO05D005693 1.2e-30 138.3 150 50.7
HPP92_028759 Vanilla planifolia HOM05D004645 ORTHO05D005693 5.7e-28 129.4 128 57.8
Pp3c11_2710 Physcomitrium patens HOM05D004645 ORTHO05D005693 6.9e-26 122.5 138 44.9
CBR_g4003 Chara braunii HOM05D004645 ORTHO05D005693 6.1e-22 109.4 158 39.9
Actinidia04560 Actinidia chinensis HOM05D004645 ORTHO05D005693 1.8e-21 107.8 114 64.0
Os04g0393100 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 5.2e-21 106.3 121 45.5
Zm00001eb421230 Zea mays HOM05D004645 ORTHO05D005693 2.8e-19 100.5 132 39.4
Os04g0393200 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D005693 9.1e-18 95.5 126 40.5
FAN01G2860 Fragaria x ananassa HOM05D004645 ORTHO05D005693 2.5e-15 87.4 111 73.9
Dinv17242 Davidia involucrata HOM05D004645 ORTHO05D005693 4.2e-15 86.7 121 73.6
Psat0s904g0040 Pisum sativum HOM05D004645 ORTHO05D005693 1.2e-14 85.1 105 50.5
Haze_00364 Corylus avellana HOM05D004645 ORTHO05D005693 2.0e-12 77.8 115 73.9
Cpa.g.c34419 Carica papaya HOM05D004645 ORTHO05D005693 1.4e-10 71.6 123 69.9
QL09p020516 Quercus lobata HOM05D004645 ORTHO05D005693 1.4e-10 71.6 36 83.3
AL3G45560 Arabidopsis lyrata HOM05D004645 ORTHO05D005693 1.6e-09 68.2 50 60.0
Sabra13G0065800 Salix brachista HOM05D004645 ORTHO05D005693 7.7e-09 65.9 112 43.8
HPP92_027982 Vanilla planifolia HOM05D004645 ORTHO05D005693 2.2e-08 64.3 99 51.5
Zm00001eb132960 Zea mays HOM05D004645 ORTHO05D049646 1.5e-07 61.6 110 74.5
Os12g0465800 Oryza sativa ssp. japonica HOM05D004645 ORTHO05D049646 3.2e-07 60.5 111 74.8


User provided reference genes

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