Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1969 Papaver somniferum HOM05D004542 ORTHO05D005380 3.8e-57 224.6 110 100.0
PSO063G3361 Papaver somniferum HOM05D004542 ORTHO05D005380 1.2e-53 213.0 106 96.2
Aqoxy3G03464 Aquilegia oxysepala HOM05D004542 ORTHO05D005380 1.3e-25 119.8 106 62.3
TAR622G0172 Trochodendron aralioides HOM05D004542 ORTHO05D005380 5.1e-25 117.9 103 58.3
Nn3g17306 Nelumbo nucifera HOM05D004542 ORTHO05D005380 2.6e-21 105.5 101 53.5
Nn3g18387 Nelumbo nucifera HOM05D004542 ORTHO05D005380 1.4e-19 99.8 101 50.5
Carub.0001s2428 Capsella rubella HOM05D004542 ORTHO05D005380 9.2e-19 97.1 114 52.6
MBI02_g20485_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 2.1e-18 95.9 101 54.5
CDE04G0708 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 4.6e-18 94.7 106 50.0
AT1G26740 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.3e-17 93.2 114 51.8
Manes.01G033600 Manihot esculenta HOM05D004542 ORTHO05D005380 1.3e-17 93.2 115 49.6
C07p19550 Brassica napus HOM05D004542 ORTHO05D005380 1.7e-17 92.8 116 49.1
BolC7t42472H Brassica oleracea HOM05D004542 ORTHO05D005380 1.7e-17 92.8 116 49.1
Dinv07945 Davidia involucrata HOM05D004542 ORTHO05D005380 2.3e-17 92.4 110 50.0
CiPaw.06G087700 Carya illinoinensis HOM05D004542 ORTHO05D005380 3.0e-17 92.0 99 53.5
BcaC06g35127 Brassica carinata HOM05D004542 ORTHO05D005380 3.9e-17 91.7 116 49.1
Prupe.1G009500 Prunus persica HOM05D004542 ORTHO05D005380 3.9e-17 91.7 103 48.5
Duzib248G0510 Durio zibethinus HOM05D004542 ORTHO05D005380 5.1e-17 91.3 107 47.7
TWI09G1372 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 5.1e-17 91.3 109 52.3
A07p13070 Brassica napus HOM05D004542 ORTHO05D005380 1.1e-16 90.1 118 47.5
Cfa004898 Carpinus fangiana HOM05D004542 ORTHO05D005380 1.5e-16 89.7 104 47.1
CDE07G0585 Ceratophyllum demersum HOM05D004542 ORTHO05D005380 1.5e-16 89.7 98 51.0
Haze_11968 Corylus avellana HOM05D004542 ORTHO05D005380 1.9e-16 89.4 104 48.1
Sp1g22070 Schrenkiella parvula HOM05D004542 ORTHO05D005380 2.5e-16 89.0 116 48.3
Sc03g0001820 Simmondsia chinensis HOM05D004542 ORTHO05D005380 2.5e-16 89.0 108 48.1
Thecc.02G341300 Theobroma cacao HOM05D004542 ORTHO05D005380 3.3e-16 88.6 114 48.2
AL1G38970 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.3e-16 88.2 112 50.0
Duzib251G0803 Durio zibethinus HOM05D004542 ORTHO05D005380 4.3e-16 88.2 107 45.8
MD04G1010200 Malus domestica HOM05D004542 ORTHO05D005380 4.3e-16 88.2 85 54.1
TWI73G0467 Tripterygium wilfordii HOM05D004542 ORTHO05D005380 4.3e-16 88.2 113 49.6
THA.LOC104822040 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 5.6e-16 87.8 112 50.9
COL.COLO4_32021 Corchorus olitorius HOM05D004542 ORTHO05D005380 7.3e-16 87.4 107 50.5
Rhsim05G0092000 Rhododendron simsii HOM05D004542 ORTHO05D005380 7.3e-16 87.4 113 48.7
RhsimUnG0183400 Rhododendron simsii HOM05D004542 ORTHO05D005380 7.3e-16 87.4 113 48.7
Sp5g24560 Schrenkiella parvula HOM05D004542 ORTHO05D005380 7.3e-16 87.4 114 50.0
C05p24230 Brassica napus HOM05D004542 ORTHO05D005380 9.6e-16 87.0 116 47.4
BolC5t31159H Brassica oleracea HOM05D004542 ORTHO05D005380 9.6e-16 87.0 116 47.4
BraA07t29078Z Brassica rapa HOM05D004542 ORTHO05D005380 9.6e-16 87.0 118 47.5
BraA09t39513Z Brassica rapa HOM05D004542 ORTHO05D005380 1.2e-15 86.7 116 46.6
Gohir.A07G047800 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.2e-15 86.7 117 47.0
Potri.008G090100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-15 86.7 113 46.9
Potri.010G165100 Populus trichocarpa HOM05D004542 ORTHO05D005380 1.2e-15 86.7 113 46.9
Hund04421 Selenicereus undatus HOM05D004542 ORTHO05D005380 1.2e-15 86.7 97 50.5
BcaC05g26392 Brassica carinata HOM05D004542 ORTHO05D005380 1.6e-15 86.3 116 47.4
Ciclev10033055m.g Citrus clementina HOM05D004542 ORTHO05D005380 1.6e-15 86.3 113 46.0
Thhalv10009076m.g Eutrema salsugineum HOM05D004542 ORTHO05D005380 1.6e-15 86.3 115 48.7
Gohir.D07G052100 Gossypium hirsutum HOM05D004542 ORTHO05D005380 1.6e-15 86.3 117 46.2
Manes.05G105400 Manihot esculenta HOM05D004542 ORTHO05D005380 1.6e-15 86.3 106 46.2
Sc14g0007580 Simmondsia chinensis HOM05D004542 ORTHO05D005380 1.6e-15 86.3 98 53.1
Gorai.001G055100 Gossypium raimondii HOM05D004542 ORTHO05D005380 2.8e-15 85.5 119 45.4
A09p40150 Brassica napus HOM05D004542 ORTHO05D005380 3.6e-15 85.1 116 45.7
FAN07G0300 Fragaria x ananassa HOM05D004542 ORTHO05D005380 3.6e-15 85.1 102 47.1
MSTRG.2336 Avicennia marina HOM05D004542 ORTHO05D005380 4.7e-15 84.7 112 46.4
Oeu054854.1 Olea europaea HOM05D004542 ORTHO05D005380 4.7e-15 84.7 108 51.9
Atru.chr11.1738 Acer truncatum HOM05D004542 ORTHO05D005380 6.2e-15 84.3 109 47.7
CARHR025220 Cardamine hirsuta HOM05D004542 ORTHO05D005380 6.2e-15 84.3 111 47.7
FvH4_4g13880 Fragaria vesca HOM05D004542 ORTHO05D005380 6.2e-15 84.3 104 46.2
FAN12G3669 Fragaria x ananassa HOM05D004542 ORTHO05D005380 6.2e-15 84.3 104 46.2
THA.LOC104808670 Tarenaya hassleriana HOM05D004542 ORTHO05D005380 6.2e-15 84.3 114 45.6
Aa31LG7G8390 Aethionema arabicum HOM05D004542 ORTHO05D005380 8.1e-15 84.0 112 49.1
Actinidia17747 Actinidia chinensis HOM05D004542 ORTHO05D005380 1.1e-14 83.6 113 49.6
RcHm_v2.0_Chr4g0415001 Rosa chinensis HOM05D004542 ORTHO05D005380 1.1e-14 83.6 105 44.8
BcaB03g14086 Brassica carinata HOM05D004542 ORTHO05D005380 1.8e-14 82.8 113 46.9
CANSAT21G2357 Cannabis sativa HOM05D004542 ORTHO05D005380 1.8e-14 82.8 105 47.6
FAN22G1961 Fragaria x ananassa HOM05D004542 ORTHO05D005380 1.8e-14 82.8 101 45.5
CSS0014017 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-14 82.4 114 45.6
CSS0031140 Camellia sinensis var. sinensis HOM05D004542 ORTHO05D005380 2.4e-14 82.4 114 45.6
Lalb_Chr10g0097781 Lupinus albus HOM05D004542 ORTHO05D005380 2.4e-14 82.4 103 45.6
Nitab4.5_0001077g0020 Nicotiana tabacum HOM05D004542 ORTHO05D005380 2.4e-14 82.4 90 52.2
Eucgr.D00185 Eucalyptus grandis HOM05D004542 ORTHO05D005380 4.0e-14 81.6 93 51.6
MBI02_g44667_MAGBIO Magnolia biondii HOM05D004542 ORTHO05D005380 4.0e-14 81.6 96 51.0
Actinidia31969 Actinidia chinensis HOM05D004542 ORTHO05D005380 6.9e-14 80.9 83 53.0
CANSAT21G0056 Cannabis sativa HOM05D004542 ORTHO05D005380 9.0e-14 80.5 104 47.1
RcHm_v2.0_Chr4g0414951 Rosa chinensis HOM05D004542 ORTHO05D005380 9.0e-14 80.5 106 42.5
TPR.G5742 Trifolium pratense HOM05D004542 ORTHO05D005380 1.2e-13 80.1 102 44.1
Cc00_g16630 Coffea canephora HOM05D004542 ORTHO05D005380 1.5e-13 79.7 111 46.8
RcHm_v2.0_Chr6g0251041 Rosa chinensis HOM05D004542 ORTHO05D005380 1.5e-13 79.7 112 45.5
Peaxi162Scf00222g00329 Petunia axillaris HOM05D004542 ORTHO05D005380 2.0e-13 79.3 83 51.8
HanXRQChr12g0361941 Helianthus annuus HOM05D004542 ORTHO05D005380 2.6e-13 79.0 110 47.3
MD13G1284400 Malus domestica HOM05D002269 ORTHO05D005380 2.6e-13 79.0 61 62.3
Psat0s1693g0080 Pisum sativum HOM05D004542 ORTHO05D005380 2.6e-13 79.0 109 44.0
Oeu001710.1 Olea europaea HOM05D004542 ORTHO05D005380 5.8e-13 77.8 112 49.1
Solyc04g005590.3 Solanum lycopersicum HOM05D004542 ORTHO05D005380 5.8e-13 77.8 109 47.7
ECA233G6069 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.6e-13 77.4 103 51.5
Nitab4.5_0000391g0330 Nicotiana tabacum HOM05D004542 ORTHO05D005380 7.6e-13 77.4 108 43.5
Hma1.2p1_0357F.1_g134240 Hydrangea macrophylla HOM05D004542 ORTHO05D005380 9.9e-13 77.0 63 63.5
Lj4g0012875 Lotus japonicus HOM05D004542 ORTHO05D005380 1.7e-12 76.3 44 77.3
Sed0021036 Sechium edule HOM05D004542 ORTHO05D005380 1.7e-12 76.3 113 42.5
Lsat_1_v5_gn_8_48901 Lactuca sativa HOM05D004542 ORTHO05D005380 2.2e-12 75.9 92 48.9
QL05p050003 Quercus lobata HOM05D004542 ORTHO05D005380 2.2e-12 75.9 44 75.0
PGSC0003DMG400002854 Solanum tuberosum HOM05D004542 ORTHO05D005380 2.2e-12 75.9 109 46.8
Sabra08G0067500 Salix brachista HOM05D004542 ORTHO05D005380 2.9e-12 75.5 125 41.6
SalBow1G8597 Salvia bowleyana HOM05D004542 ORTHO05D005380 2.9e-12 75.5 88 51.1
Ca_18347_v3 Cicer arietinum L. HOM05D004542 ORTHO05D005380 3.8e-12 75.1 100 42.0
Migut.L01259 Erythranthe guttata HOM05D004542 ORTHO05D005380 3.8e-12 75.1 82 48.8
Medtr1g025320 Medicago truncatula HOM05D004542 ORTHO05D005380 3.8e-12 75.1 44 72.7
AL2G28600 Arabidopsis lyrata HOM05D004542 ORTHO05D005380 4.9e-12 74.7 43 83.7
ClCG05G024060 Citrullus lanatus HOM05D004542 ORTHO05D005380 4.9e-12 74.7 115 40.9
Sopen04g001630 Solanum pennellii HOM05D004542 ORTHO05D005380 4.9e-12 74.7 102 46.1
CsaV3_5G032980 Cucumis sativus L. HOM05D004542 ORTHO05D005380 6.4e-12 74.3 114 41.2
PGR083G2602 Punica granatum HOM05D004542 ORTHO05D005380 8.4e-12 73.9 43 74.4
Cpa.g.sc69.70 Carica papaya HOM05D004542 ORTHO05D005380 1.1e-11 73.6 113 43.4
Nitab4.5_0013306g0010 Nicotiana tabacum HOM05D004542 ORTHO05D005380 1.1e-11 73.6 85 48.2
Os03g0168900 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 1.1e-11 73.6 76 48.7
Peaxi162Scf00023g02531 Petunia axillaris HOM05D004542 ORTHO05D005380 1.1e-11 73.6 81 51.9
Glyma.05G118100 Glycine max HOM05D004542 ORTHO05D005380 1.4e-11 73.2 43 74.4
Lj4g0007672 Lotus japonicus HOM05D004542 ORTHO05D005380 1.4e-11 73.2 43 76.7
Phvul.002G208200 Phaseolus vulgaris HOM05D004542 ORTHO05D005380 1.4e-11 73.2 92 44.6
VMungo0251G2924 Vigna mungo HOM05D004542 ORTHO05D005380 1.4e-11 73.2 44 72.7
MELO3C012119.2 Cucumis melo HOM05D004542 ORTHO05D005380 2.4e-11 72.4 115 42.6
AUR62031723 Chenopodium quinoa HOM05D004542 ORTHO05D005380 5.4e-11 71.2 39 79.5
HanXRQChr15g0476941 Helianthus annuus HOM05D004542 ORTHO05D005380 5.4e-11 71.2 106 44.3
EL10Ac2g02750 Beta vulgaris HOM05D004542 ORTHO05D005380 7.1e-11 70.9 56 57.1
ECA246G0207 Erigeron canadensis HOM05D004542 ORTHO05D005380 7.1e-11 70.9 63 58.7
Glyma.08G073000 Glycine max HOM05D004542 ORTHO05D005380 7.1e-11 70.9 43 72.1
arahy.Tifrunner.gnm1.ann1.53F0XR Arachis hypogaea HOM05D004542 ORTHO05D005380 9.3e-11 70.5 60 60.0
arahy.Tifrunner.gnm1.ann1.H527P9 Arachis hypogaea HOM05D004542 ORTHO05D005380 9.3e-11 70.5 60 60.0
Glyma.06G320500 Glycine max HOM05D004542 ORTHO05D005380 1.2e-10 70.1 45 73.3
Cpa.g.sc57.38 Carica papaya HOM05D004542 ORTHO05D005380 1.6e-10 69.7 43 74.4
Zm00001eb005320 Zea mays HOM05D004542 ORTHO05D005380 2.1e-10 69.3 45 68.9
TPR.G8852 Trifolium pratense HOM05D004542 ORTHO05D005380 3.5e-10 68.6 43 67.4
Solyc05g013190.4 Solanum lycopersicum HOM05D004542 ORTHO05D005380 4.6e-10 68.2 37 81.1
Sopen05g007930 Solanum pennellii HOM05D004542 ORTHO05D005380 4.6e-10 68.2 37 81.1
Os10g0407100 Oryza sativa ssp. japonica HOM05D004542 ORTHO05D005380 6.0e-10 67.8 36 75.0
SalBow1G4390 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.0e-10 67.8 38 76.3
SalBow1G7833 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.0e-10 67.8 38 76.3
Zm00001eb402400 Zea mays HOM05D004542 ORTHO05D005380 7.8e-10 67.4 38 76.3
Ah.08g212630 Amaranthus hybridus HOM05D004542 ORTHO05D005380 1.0e-09 67.0 37 78.4
Glyma.04G115800 Glycine max HOM05D004542 ORTHO05D005380 1.0e-09 67.0 45 71.1
SGA_v2.0_scaffold455G51899 Striga asiatica HOM05D004542 ORTHO05D005380 1.0e-09 67.0 104 45.2
AT1G69485 Arabidopsis thaliana HOM05D004542 ORTHO05D005380 1.7e-09 66.2 35 88.6
SalBow1G1756 Salvia bowleyana HOM05D004542 ORTHO05D005380 6.6e-09 64.3 35 80.0
Ciclev10013639m.g Citrus clementina HOM05D004542 ORTHO05D005380 4.8e-07 58.2 113 36.3
Sopen03g017060 Solanum pennellii HOM05D004542 ORTHO05D005380 1.4e-06 56.6 36 69.4
AUR62032610 Chenopodium quinoa HOM05D004542 ORTHO05D005380 3.1e-06 55.5 73 42.5
SMO358G0607 Selaginella moellendorffii HOM05D000228 ORTHO05D005112 5.3e-06 54.7 34 70.6
Pp3c1_32410 Physcomitrium patens HOM05D004542 ORTHO05D005380 6.9e-06 54.3 72 40.3
SEGI_34151 Sequoiadendron giganteum HOM05D004542 ORTHO05D005380 6.9e-06 54.3 36 63.9


User provided reference genes

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