Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1515 Papaver somniferum HOM05D005356 ORTHO05D006596 1.4e-229 799.3 408 100.0
PSO063G2098 Papaver somniferum HOM05D005356 ORTHO05D006596 3.7e-190 668.3 358 97.2
TAR629G3426 Trochodendron aralioides HOM05D005356 ORTHO05D006596 1.6e-156 556.6 413 70.5
TAR375G1012 Trochodendron aralioides HOM05D005356 ORTHO05D006596 2.1e-156 556.2 412 69.7
Nn1g09227 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.9e-149 533.1 387 69.5
Dinv17238 Davidia involucrata HOM05D005356 ORTHO05D006596 4.6e-148 528.5 421 67.7
DCAR_009031 Daucus carota HOM05D005356 ORTHO05D006596 5.1e-147 525.0 347 72.9
Thecc.05G227000 Theobroma cacao HOM05D005356 ORTHO05D006596 2.5e-146 522.7 412 65.8
Nn3g19190 Nelumbo nucifera HOM05D005356 ORTHO05D006596 1.6e-145 520.0 410 65.6
Atru.chr12.1818 Acer truncatum HOM05D005356 ORTHO05D006596 3.7e-145 518.8 414 64.5
Aqoxy1G01762 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 1.8e-144 516.5 341 75.1
Manes.08G159200 Manihot esculenta HOM05D005356 ORTHO05D006596 2.4e-144 516.2 408 65.2
Aqoxy3G04210 Aquilegia oxysepala HOM05D005356 ORTHO05D006596 5.3e-144 515.0 343 74.9
FvH4_7g34281 Fragaria vesca HOM05D005356 ORTHO05D006596 2.6e-143 512.7 348 70.1
Hma1.2p1_0419F.1_g149580 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 2.6e-143 512.7 365 70.7
Potri.013G076100 Populus trichocarpa HOM05D005356 ORTHO05D006596 2.2e-142 509.6 356 71.6
Hund11857 Selenicereus undatus HOM05D005356 ORTHO05D006596 4.9e-142 508.4 397 66.2
CiPaw.05G210900 Carya illinoinensis HOM05D005356 ORTHO05D006596 6.4e-142 508.1 402 63.9
Sabra13G0065300 Salix brachista HOM05D005356 ORTHO05D006596 6.4e-142 508.1 354 70.9
Gorai.007G246900 Gossypium raimondii HOM05D005356 ORTHO05D006596 8.4e-142 507.7 410 65.6
Gohir.D11G234600 Gossypium hirsutum HOM05D005356 ORTHO05D006596 1.9e-141 506.5 410 65.4
RcHm_v2.0_Chr1g0384641 Rosa chinensis HOM05D005356 ORTHO05D006596 4.2e-141 505.4 351 69.2
Cc10_g12920 Coffea canephora HOM05D005356 ORTHO05D006596 9.3e-141 504.2 344 69.8
CAN.G2009.1 Capsicum annuum HOM05D005356 ORTHO05D006596 1.2e-140 503.8 411 63.5
Solyc04g064720.3 Solanum lycopersicum HOM05D005356 ORTHO05D006596 1.2e-140 503.8 416 62.7
Sopen04g026680 Solanum pennellii HOM05D005356 ORTHO05D006596 1.2e-140 503.8 416 62.7
Ciclev10031697m.g Citrus clementina HOM05D005356 ORTHO05D006596 2.1e-140 503.1 399 64.9
Gohir.A11G226000 Gossypium hirsutum HOM05D005356 ORTHO05D006596 7.9e-140 501.1 410 64.9
Hma1.2p1_0564F.1_g179310 Hydrangea macrophylla HOM05D005356 ORTHO05D006596 1.3e-139 500.4 415 64.6
PGSC0003DMG400024812 Solanum tuberosum HOM05D005356 ORTHO05D006596 1.8e-139 500.0 413 62.7
COL.COLO4_32921 Corchorus olitorius HOM05D005356 ORTHO05D006596 3.9e-139 498.8 415 61.9
Gorai.004G255200 Gossypium raimondii HOM05D005356 ORTHO05D006596 1.1e-138 497.3 398 64.3
Nitab4.5_0002990g0020 Nicotiana tabacum HOM05D005356 ORTHO05D006596 1.5e-138 496.9 410 63.2
MD07G1311300 Malus domestica HOM05D005356 ORTHO05D006596 2.5e-138 496.1 339 70.8
Peaxi162Scf00263g00323 Petunia axillaris HOM05D005356 ORTHO05D006596 2.5e-138 496.1 415 61.9
Prupe.2G329800 Prunus persica HOM05D005356 ORTHO05D006596 2.5e-138 496.1 338 71.3
GSVIVG01024263001 Vitis vinifera HOM05D005356 ORTHO05D006596 2.5e-138 496.1 361 67.9
CiPaw.06G037000 Carya illinoinensis HOM05D005356 ORTHO05D006596 4.3e-138 495.4 338 68.9
Nitab4.5_0000299g0040 Nicotiana tabacum HOM05D005356 ORTHO05D006596 7.4e-138 494.6 410 62.9
Gohir.A08G221634 Gossypium hirsutum HOM05D005356 ORTHO05D006596 2.1e-137 493.0 397 63.0
Medtr0172s0020 Medicago truncatula HOM05D005356 ORTHO05D006596 6.2e-137 491.5 372 66.1
CsaV3_2G035860 Cucumis sativus L. HOM05D005356 ORTHO05D006596 1.4e-136 490.3 367 64.9
Migut.N03237 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.8e-136 490.0 413 62.2
Sabra19G0053800 Salix brachista HOM05D005356 ORTHO05D006596 1.2e-135 487.3 429 59.4
Os04g0602400 Oryza sativa ssp. japonica HOM05D005356 ORTHO05D006596 2.0e-135 486.5 353 69.1
MELO3C024754.2 Cucumis melo HOM05D005356 ORTHO05D006596 3.4e-135 485.7 367 64.3
Phvul.011G016500 Phaseolus vulgaris HOM05D005356 ORTHO05D006596 2.9e-134 482.6 387 61.2
Sed0019262 Sechium edule HOM05D005356 ORTHO05D006596 3.8e-134 482.3 405 60.7
Lj3g0010653 Lotus japonicus HOM05D005356 ORTHO05D006596 6.5e-134 481.5 362 64.6
Sp6g26700 Schrenkiella parvula HOM05D005356 ORTHO05D006596 8.4e-134 481.1 350 66.6
Sed0017544 Sechium edule HOM05D005356 ORTHO05D006596 8.4e-134 481.1 409 61.4
arahy.Tifrunner.gnm1.ann1.RW14FX Arachis hypogaea HOM05D005356 ORTHO05D006596 1.4e-133 480.3 348 66.7
A02p04240 Brassica napus HOM05D005356 ORTHO05D006596 4.2e-133 478.8 376 65.2
BraA02t05387Z Brassica rapa HOM05D005356 ORTHO05D006596 4.2e-133 478.8 376 65.2
THA.LOC104802905 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 7.1e-133 478.0 392 62.0
BcaC03g13524 Brassica carinata HOM05D005356 ORTHO05D006596 9.3e-133 477.6 350 67.1
TPR.G9827 Trifolium pratense HOM05D005356 ORTHO05D006596 9.3e-133 477.6 367 64.0
Migut.C01041 Erythranthe guttata HOM05D005356 ORTHO05D006596 1.2e-132 477.2 407 61.4
C02p09120 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-132 476.9 350 67.1
THA.LOC104820830 Tarenaya hassleriana HOM05D005356 ORTHO05D006596 1.6e-132 476.9 348 64.7
Glyma.12G013400 Glycine max HOM05D005356 ORTHO05D006596 2.1e-132 476.5 344 65.1
arahy.Tifrunner.gnm1.ann1.509DQ1 Arachis hypogaea HOM05D005356 ORTHO05D006596 3.5e-132 475.7 361 65.1
Oeu030531.2 Olea europaea HOM05D005356 ORTHO05D006596 6.0e-132 474.9 351 66.4
AL6G28610 Arabidopsis lyrata HOM05D005356 ORTHO05D006596 1.0e-131 474.2 351 65.2
Eucgr.A02993 Eucalyptus grandis HOM05D005356 ORTHO05D006596 1.0e-131 474.2 394 61.9
SalBow6G3313 Salvia bowleyana HOM05D005356 ORTHO05D006596 1.3e-131 473.8 417 59.7
BolC2t06824H Brassica oleracea HOM05D005356 ORTHO05D006596 2.3e-131 473.0 350 66.6
BcaB08g36764 Brassica carinata HOM05D005356 ORTHO05D006596 5.1e-131 471.9 399 60.9
ATR0369G003 Amborella trichopoda HOM05D005356 ORTHO05D006596 8.7e-131 471.1 401 61.8
PGR119G0933 Punica granatum HOM05D005356 ORTHO05D006596 8.7e-131 471.1 318 71.1
BraA10t44246Z Brassica rapa HOM05D005356 ORTHO05D006596 1.1e-130 470.7 345 66.4
CARHR195670 Cardamine hirsuta HOM05D005356 ORTHO05D006596 1.1e-130 470.7 348 65.5
Lalb_Chr01g0000721 Lupinus albus HOM05D005356 ORTHO05D006596 1.1e-130 470.7 338 66.9
AUR62002252 Chenopodium quinoa HOM05D005356 ORTHO05D006596 1.5e-130 470.3 416 60.3
AT5G17520 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.5e-130 469.5 338 65.1
PGR008G0003 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-130 469.5 318 70.8
PGR131G0008 Punica granatum HOM05D005356 ORTHO05D006596 2.5e-130 469.5 318 70.8
Aa31LG11G12150 Aethionema arabicum HOM05D005356 ORTHO05D006596 3.3e-130 469.2 345 65.8
SalBow7G2700 Salvia bowleyana HOM05D005356 ORTHO05D006596 4.3e-130 468.8 344 67.4
Lsat_1_v5_gn_9_47941 Lactuca sativa HOM05D005356 ORTHO05D006596 9.7e-130 467.6 416 59.9
EL10Ac3g05893 Beta vulgaris HOM05D005356 ORTHO05D006596 1.6e-129 466.8 400 60.8
A10p21870 Brassica napus HOM05D005356 ORTHO05D006596 1.6e-129 466.8 345 66.4
ECA232G1465 Erigeron canadensis HOM05D005356 ORTHO05D006596 1.4e-128 463.8 417 59.0
HanXRQChr05g0139001 Helianthus annuus HOM05D005356 ORTHO05D006596 1.4e-128 463.8 407 59.7
FAN03G1362 Fragaria x ananassa HOM05D005356 ORTHO05D006596 5.3e-128 461.8 319 70.8
CANSAT21G1742 Cannabis sativa HOM05D005356 ORTHO05D006596 6.9e-128 461.5 325 67.1
BcaC04g18781 Brassica carinata HOM05D005356 ORTHO05D006596 4.5e-127 458.8 399 60.7
Psat0s2502g0200 Pisum sativum HOM05D005356 ORTHO05D006596 1.0e-126 457.6 338 63.3
MSTRG.24194 Avicennia marina HOM05D005356 ORTHO05D006596 5.0e-126 455.3 412 58.0
C09p59620 Brassica napus HOM05D005356 ORTHO05D006596 5.0e-126 455.3 399 60.4
BolC9t58801H Brassica oleracea HOM05D005356 ORTHO05D006596 5.0e-126 455.3 399 60.4
VMungo0647G2360 Vigna mungo HOM05D005356 ORTHO05D006596 1.4e-125 453.8 305 70.2
AUR62015463 Chenopodium quinoa HOM05D005356 ORTHO05D006596 9.4e-125 451.1 407 59.7
Oeu015013.2 Olea europaea HOM05D005356 ORTHO05D006596 6.1e-124 448.4 492 51.4
MD01G1240200 Malus domestica HOM05D005356 ORTHO05D006596 1.8e-120 436.8 346 63.9
Actinidia33804 Actinidia chinensis HOM05D005356 ORTHO05D006596 4.1e-120 435.6 357 63.3
Manes.09G130400 Manihot esculenta HOM05D005356 ORTHO05D006596 1.2e-119 434.1 401 57.9
SGA_v2.0_scaffold19G08642 Striga asiatica HOM05D005356 ORTHO05D006596 8.5e-118 427.9 335 63.3
A10p21860 Brassica napus HOM05D005356 ORTHO05D006596 9.4e-117 424.5 320 65.6
Duzib177G1190 Durio zibethinus HOM05D005356 ORTHO05D006596 6.7e-115 418.3 345 65.8
unitig_744.g24563 Utricularia gibba HOM05D005356 ORTHO05D006596 6.7e-115 418.3 337 61.4
SEGI_37553 Sequoiadendron giganteum HOM05D005356 ORTHO05D006596 5.7e-114 415.2 330 61.5
Rhsim09G0214300 Rhododendron simsii HOM05D005356 ORTHO05D006596 1.7e-113 413.7 629 42.8
MSTRG.22381 Avicennia marina HOM05D005356 ORTHO05D006596 2.2e-113 413.3 411 54.3
Lj3A883T53 Lonicera japonica HOM05D005356 ORTHO05D006596 2.2e-113 413.3 280 73.2
Gohir.D08G239900 Gossypium hirsutum HOM05D005356 ORTHO05D006596 6.5e-110 401.7 268 71.6
Ca_19620_v3 Cicer arietinum L. HOM05D005356 ORTHO05D006596 5.5e-109 398.7 268 69.4
Haze_00348 Corylus avellana HOM05D005356 ORTHO05D006596 5.2e-107 392.1 330 63.6
Cpa.g.sc43.152 Carica papaya HOM05D005356 ORTHO05D006596 2.0e-103 380.2 320 64.1
ClCG02G007870 Citrullus lanatus HOM05D005356 ORTHO05D006596 1.7e-102 377.1 298 61.7
CDE11G1065 Ceratophyllum demersum HOM05D005356 ORTHO05D006596 1.2e-100 370.9 348 56.9
Mapoly0051s0014 Marchantia polymorpha HOM05D005356 ORTHO05D006596 2.0e-98 363.6 324 53.1
Carub.0006s1575 Capsella rubella HOM05D005356 ORTHO05D006596 2.6e-98 363.2 263 63.9
Pp3c6_18710 Physcomitrium patens HOM05D005356 ORTHO05D006596 1.4e-96 357.5 385 47.8
AagrBONN_evm.TU.Sc2ySwM_228.477 Anthoceros agrestis HOM05D005356 ORTHO05D006596 1.3e-94 350.9 330 51.5
SMO012G0030 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 1.2e-90 337.8 366 48.4
Pp3c24_890 Physcomitrium patens HOM05D005356 ORTHO05D006596 2.8e-89 333.2 328 51.5
MBI04_g30781_MAGBIO Magnolia biondii HOM05D005356 ORTHO05D006596 1.4e-88 330.9 290 64.1
HPP92_022764 Vanilla planifolia HOM05D005356 ORTHO05D006596 2.3e-86 323.6 220 65.5
Sopen04g026690 Solanum pennellii HOM05D005356 ORTHO05D006596 2.0e-82 310.5 294 59.2
CANSAT21G0168 Cannabis sativa HOM05D005356 ORTHO05D006596 1.6e-79 300.8 214 64.0
SMO118G0252 Selaginella moellendorffii HOM05D005356 ORTHO05D006596 3.6e-76 289.7 281 53.0
vmacro22188 Vaccinium macrocarpon HOM05D005356 ORTHO05D006596 3.4e-74 283.1 314 55.1
CSS0033101 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 4.4e-74 282.7 207 70.5
Sc03g0005650 Simmondsia chinensis HOM05D005356 ORTHO05D006596 5.6e-69 265.8 245 62.9
Zm00001eb071770 Zea mays HOM05D005356 ORTHO05D006596 7.3e-69 265.4 191 69.6
CANSAT21G1370 Cannabis sativa HOM05D005356 ORTHO05D006596 8.9e-67 258.5 171 69.0
Pp3c23_14070 Physcomitrium patens HOM05D005356 ORTHO05D006596 6.0e-63 245.7 244 50.4
Actinidia04557 Actinidia chinensis HOM05D005356 ORTHO05D006596 1.1e-53 214.9 224 53.6
Thhalv10016106m.g Eutrema salsugineum HOM05D005356 ORTHO05D006596 1.5e-45 188.0 119 67.2
AT5G17523 Arabidopsis thaliana HOM05D005356 ORTHO05D006596 2.8e-44 183.7 144 63.9
MCO10G093 Micromonas commoda HOM05D005356 ORTHO05D006596 8.1e-44 182.2 335 33.7
Cre12.g486600 Chlamydomonas reinhardtii HOM05D005356 ORTHO05D006596 2.3e-38 164.1 282 33.3
Pp3c24_840 Physcomitrium patens HOM05D005356 ORTHO05D006596 4.8e-36 156.4 150 50.0
Glyma.09G223400 Glycine max HOM05D005356 ORTHO05D006596 4.5e-34 149.8 93 69.9
PRCOL_00004977 Prasinoderma coloniale HOM05D005356 ORTHO05D006596 8.4e-33 145.6 320 30.3
CSS0037967 Camellia sinensis var. sinensis HOM05D005356 ORTHO05D006596 2.8e-28 130.6 72 80.6
CBR_g17686 Chara braunii HOM05D005356 ORTHO05D006596 1.1e-24 118.6 116 48.3
Zm00001eb003380 Zea mays HOM05D001522 ORTHO05D001547 5.3e-19 99.8 77 70.1
CBR_g17688 Chara braunii HOM05D005356 ORTHO05D006596 1.0e-17 95.5 103 48.5
Pp3c21_10850 Physcomitrium patens HOM05D005356 ORTHO05D310352 3.9e-14 83.6 186 29.6
HPP92_022763 Vanilla planifolia HOM05D005356 ORTHO05D006596 1.4e-11 75.1 125 41.6


User provided reference genes

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