Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1422 Papaver somniferum HOM05D004773 ORTHO05D005943 4.1e-130 468.0 227 100.0
PSO063G3794 Papaver somniferum HOM05D004773 ORTHO05D005943 2.7e-105 385.6 193 96.4
Aqoxy5G04203 Aquilegia oxysepala HOM05D004773 ORTHO05D005943 2.1e-89 332.8 203 76.8
TAR317G0002 Trochodendron aralioides HOM05D004773 ORTHO05D005943 7.6e-84 314.3 212 74.5
PSO063G1994 Papaver somniferum HOM05D004773 ORTHO05D005943 1.9e-82 309.7 196 75.5
Atru.chr2.1725 Acer truncatum HOM05D004773 ORTHO05D005943 5.4e-82 308.1 182 78.6
Nn2g15176 Nelumbo nucifera HOM05D004773 ORTHO05D005943 1.6e-81 306.6 202 72.3
QL09p005927 Quercus lobata HOM05D004773 ORTHO05D005943 6.0e-81 304.7 183 77.6
Potri.013G073800 Populus trichocarpa HOM05D004773 ORTHO05D005943 1.3e-80 303.5 182 78.6
Lj1P1212T41 Lonicera japonica HOM05D004773 ORTHO05D005943 1.8e-80 303.1 182 75.8
CiPaw.05G210200 Carya illinoinensis HOM05D004773 ORTHO05D005943 8.7e-80 300.8 183 77.6
MBI04_g12483_MAGBIO Magnolia biondii HOM05D004773 ORTHO05D005943 1.5e-79 300.1 210 69.0
Cfa016123 Carpinus fangiana HOM05D004773 ORTHO05D005943 1.9e-79 299.7 183 76.5
Ciclev10032178m.g Citrus clementina HOM05D004773 ORTHO05D005943 1.9e-79 299.7 182 76.4
MD15G1141100 Malus domestica HOM05D004773 ORTHO05D005943 3.3e-79 298.9 183 76.0
ECA234G3816 Erigeron canadensis HOM05D004773 ORTHO05D005943 5.6e-79 298.1 183 75.4
vmacro15870 Vaccinium macrocarpon HOM05D004773 ORTHO05D005943 9.6e-79 297.4 183 75.4
Rhsim02G0120400 Rhododendron simsii HOM05D000873 ORTHO05D002948 1.3e-78 297.0 183 75.4
C09p59580 Brassica napus HOM05D004773 ORTHO05D005943 2.8e-78 295.8 185 75.7
AUR62016916 Chenopodium quinoa HOM05D004773 ORTHO05D005943 2.8e-78 295.8 182 74.2
Cc02_g12570 Coffea canephora HOM05D004773 ORTHO05D005943 2.8e-78 295.8 183 73.2
Carub.0006s1581 Capsella rubella HOM05D004773 ORTHO05D005943 3.7e-78 295.4 182 76.4
BolC9t58797H Brassica oleracea HOM05D004773 ORTHO05D005943 6.2e-78 294.7 185 75.1
Haze_00339 Corylus avellana HOM05D004773 ORTHO05D005943 6.2e-78 294.7 183 76.0
Actinidia11804 Actinidia chinensis HOM05D004773 ORTHO05D005943 8.1e-78 294.3 183 72.7
BcaB08g36761 Brassica carinata HOM05D004773 ORTHO05D005943 8.1e-78 294.3 182 75.8
A10p21830 Brassica napus HOM05D004773 ORTHO05D008759 8.1e-78 294.3 187 73.8
Hma1.2p1_0144F.1_g064840 Hydrangea macrophylla HOM05D004773 ORTHO05D005943 1.1e-77 293.9 183 72.7
AT5G17570 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.4e-77 293.5 182 75.8
AUR62014736 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.8e-77 293.1 182 73.6
Thhalv10014121m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 3.1e-77 292.4 182 75.8
Thecc.05G229300 Theobroma cacao HOM05D004773 ORTHO05D005943 3.1e-77 292.4 182 73.6
BcaC04g18778 Brassica carinata HOM05D004773 ORTHO05D005943 5.3e-77 291.6 182 75.3
Duzib128G1941 Durio zibethinus HOM05D004773 ORTHO05D005943 9.0e-77 290.8 182 73.6
Manes.08G158200 Manihot esculenta HOM05D004773 ORTHO05D005943 9.0e-77 290.8 182 74.2
MSTRG.7300 Avicennia marina HOM05D004773 ORTHO05D005943 1.2e-76 290.4 183 74.3
HanXRQChr17g0555701 Helianthus annuus HOM05D004773 ORTHO05D005943 1.2e-76 290.4 183 73.2
TWI32G1059 Tripterygium wilfordii HOM05D004773 ORTHO05D005943 1.2e-76 290.4 182 74.7
Prupe.7G272000 Prunus persica HOM05D004773 ORTHO05D005943 1.5e-76 290.0 183 75.4
ATR0620G003 Amborella trichopoda HOM05D004773 ORTHO05D005943 3.4e-76 288.9 185 73.0
Ca_04503_v3 Cicer arietinum L. HOM05D004773 ORTHO05D005943 3.4e-76 288.9 183 72.7
Aa31LG11G12090 Aethionema arabicum HOM05D004773 ORTHO05D005943 4.5e-76 288.5 182 74.2
AL6G28660 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 4.5e-76 288.5 182 73.6
Gorai.007G248200 Gossypium raimondii HOM05D004773 ORTHO05D005943 4.5e-76 288.5 182 72.0
Sp6g26650 Schrenkiella parvula HOM05D004773 ORTHO05D005943 5.8e-76 288.1 182 75.3
Lj2g0008141 Lotus japonicus HOM05D004773 ORTHO05D005943 7.6e-76 287.7 183 72.7
Glyma.16G151100 Glycine max HOM05D004773 ORTHO05D005943 1.0e-75 287.3 183 71.6
Gohir.D11G235500 Gossypium hirsutum HOM05D004773 ORTHO05D005943 1.0e-75 287.3 182 71.4
Medtr6g033025 Medicago truncatula HOM05D004773 ORTHO05D005943 1.0e-75 287.3 183 72.7
Sabra13G0063900 Salix brachista HOM05D004773 ORTHO05D008759 1.3e-75 287.0 182 74.7
arahy.Tifrunner.gnm1.ann1.WJU3K5 Arachis hypogaea HOM05D004773 ORTHO05D005943 2.2e-75 286.2 182 74.2
Eucgr.F01970 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.9e-75 285.8 182 70.3
Psat1g096800 Pisum sativum HOM05D004773 ORTHO05D005943 3.8e-75 285.4 183 73.2
THA.LOC104802901 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 3.8e-75 285.4 182 73.1
Hund21271 Selenicereus undatus HOM05D004773 ORTHO05D005943 4.9e-75 285.0 224 61.6
Peaxi162Scf00527g00065 Petunia axillaris HOM05D004773 ORTHO05D005943 8.4e-75 284.3 183 72.1
SalBow8G5056 Salvia bowleyana HOM05D004773 ORTHO05D005943 8.4e-75 284.3 183 72.1
CDE07G0301 Ceratophyllum demersum HOM05D004773 ORTHO05D005943 1.1e-74 283.9 182 71.4
Sopen02g023790 Solanum pennellii HOM05D004773 ORTHO05D005943 1.1e-74 283.9 183 72.7
FvH4_6g13930 Fragaria vesca HOM05D004773 ORTHO05D005943 1.4e-74 283.5 182 73.1
FAN14G1019 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.4e-74 283.5 182 73.1
Nitab4.5_0003676g0020 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.4e-74 283.5 183 71.0
Migut.M01200 Erythranthe guttata HOM05D004773 ORTHO05D005943 1.9e-74 283.1 208 66.3
Lalb_Chr06g0173871 Lupinus albus HOM05D004773 ORTHO05D005943 4.2e-74 282.0 183 69.9
Solyc02g078980.3 Solanum lycopersicum HOM05D004773 ORTHO05D005943 4.2e-74 282.0 183 72.1
CANSAT01G2664 Cannabis sativa HOM05D004773 ORTHO05D005943 5.5e-74 281.6 182 73.6
Cpa.g.sc73.89 Carica papaya HOM05D004773 ORTHO05D005943 5.5e-74 281.6 182 72.5
FAN05G1629 Fragaria x ananassa HOM05D004773 ORTHO05D005943 5.5e-74 281.6 182 72.0
FAN02G0119 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.3e-74 280.8 182 72.5
FAN09G4020 Fragaria x ananassa HOM05D004773 ORTHO05D005943 9.3e-74 280.8 182 72.5
Gohir.A11G222000 Gossypium hirsutum HOM05D004773 ORTHO05D005943 9.3e-74 280.8 182 70.9
Phvul.004G078000 Phaseolus vulgaris HOM05D004773 ORTHO05D005943 9.3e-74 280.8 182 70.9
Nitab4.5_0005399g0010 Nicotiana tabacum HOM05D004773 ORTHO05D005943 1.2e-73 280.4 183 71.0
PGSC0003DMG400022363 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.2e-73 280.4 183 71.6
FAN14G4391 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.1e-73 279.6 182 71.4
HanXRQChr12g0364651 Helianthus annuus HOM05D004773 ORTHO05D005943 2.1e-73 279.6 183 70.5
FAN05G3354 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-73 279.3 182 71.4
FAN09G0676 Fragaria x ananassa HOM05D004773 ORTHO05D005943 2.7e-73 279.3 182 71.4
Oeu053928.1 Olea europaea HOM05D004773 ORTHO05D005943 2.7e-73 279.3 183 69.4
PGR102G2546 Punica granatum HOM05D004773 ORTHO05D005943 2.7e-73 279.3 182 72.5
FvH4_6g14060 Fragaria vesca HOM05D004773 ORTHO05D005943 6.0e-73 278.1 182 70.9
FAN09G3809 Fragaria x ananassa HOM05D004773 ORTHO05D005943 1.0e-72 277.3 182 70.9
Lsat_1_v5_gn_4_57340 Lactuca sativa HOM05D004773 ORTHO05D005943 1.0e-72 277.3 183 68.9
Os04g0577500 Oryza sativa ssp. japonica HOM05D004773 ORTHO05D005943 3.9e-72 275.4 193 65.3
CsaV3_3G010040 Cucumis sativus L. HOM05D004773 ORTHO05D005943 1.9e-71 273.1 188 66.5
DCAR_024890 Daucus carota HOM05D004773 ORTHO05D005943 3.3e-71 272.3 183 66.7
Zm00001eb073330 Zea mays HOM05D004773 ORTHO05D005943 3.3e-71 272.3 193 64.2
MELO3C006226.2 Cucumis melo HOM05D004773 ORTHO05D005943 7.4e-71 271.2 188 66.5
CAN.G1181.18 Capsicum annuum HOM05D004773 ORTHO05D005943 1.6e-70 270.0 183 69.4
HPP92_001431 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.1e-70 269.6 182 67.0
Sc17g0006500 Simmondsia chinensis HOM05D004773 ORTHO05D005943 2.8e-70 269.2 182 68.1
FAN09G2979 Fragaria x ananassa HOM05D004773 ORTHO05D005943 3.7e-70 268.9 182 70.3
Sed0007971 Sechium edule HOM05D004773 ORTHO05D005943 3.7e-70 268.9 188 64.9
GSVIVG01019376001 Vitis vinifera HOM05D004773 ORTHO05D005943 6.2e-70 268.1 165 75.2
ECA234G0571 Erigeron canadensis HOM05D000140 ORTHO05D000087 1.1e-69 267.3 183 67.2
Eucgr.F01964 Eucalyptus grandis HOM05D004773 ORTHO05D005943 2.4e-69 266.2 182 65.9
THA.LOC104802900 Tarenaya hassleriana HOM05D004773 ORTHO05D005943 2.4e-69 266.2 182 69.2
arahy.Tifrunner.gnm1.ann1.KNV4WG Arachis hypogaea HOM05D004773 ORTHO05D005943 3.1e-69 265.8 168 73.8
SGA_v2.0_scaffold114G31969 Striga asiatica HOM05D004773 ORTHO05D005943 3.1e-69 265.8 183 67.8
AUR62012595 Chenopodium quinoa HOM05D004773 ORTHO05D005943 1.2e-68 263.8 182 66.5
ClCG05G002600 Citrullus lanatus HOM05D004773 ORTHO05D005943 1.5e-68 263.5 241 55.2
HPP92_001439 Vanilla planifolia HOM05D004773 ORTHO05D005943 3.4e-68 262.3 182 64.8
AT3G03500 Arabidopsis thaliana HOM05D004773 ORTHO05D005943 1.9e-66 256.5 181 66.3
Carub.0003s0264 Capsella rubella HOM05D004773 ORTHO05D005943 1.9e-66 256.5 181 65.7
FAN02G4326 Fragaria x ananassa HOM05D004773 ORTHO05D005943 4.2e-66 255.4 174 69.0
AL3G12620 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.5e-66 255.0 181 66.3
Cc02_g14730 Coffea canephora HOM05D004773 ORTHO05D005943 5.5e-66 255.0 182 63.2
Aa31LG5G14030 Aethionema arabicum HOM05D004773 ORTHO05D005943 9.3e-66 254.2 181 65.2
A06p26410 Brassica napus HOM05D004773 ORTHO05D005943 3.5e-65 252.3 181 65.2
BNapus_Darmor_BZH_scaffold_78p00160 Brassica napus HOM05D004773 ORTHO05D005943 3.5e-65 252.3 181 65.2
BNapus_Darmor_BZH_scaffold_162p00180 Brassica napus HOM05D004773 ORTHO05D005943 8.7e-64 247.7 182 64.8
BolC1t05828H Brassica oleracea HOM05D004773 ORTHO05D005943 8.7e-64 247.7 182 64.8
BraA01t04577Z Brassica rapa HOM05D004773 ORTHO05D005943 1.1e-63 247.3 183 64.5
Duzib177G1208 Durio zibethinus HOM05D004773 ORTHO05D005943 1.9e-63 246.5 185 62.2
Thecc.05G229900 Theobroma cacao HOM05D004773 ORTHO05D005943 6.9e-61 238.0 183 60.7
Gohir.D13G163600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 2.6e-60 236.1 185 59.5
BcaC09g47749 Brassica carinata HOM05D004773 ORTHO05D005943 3.4e-60 235.7 207 56.5
CARHR195610 Cardamine hirsuta HOM05D004773 ORTHO05D005943 1.3e-59 233.8 143 75.5
Gohir.A13G158600 Gossypium hirsutum HOM05D004773 ORTHO05D005943 8.5e-59 231.1 185 58.9
SHI39094 Sapria himalayana HOM05D004773 ORTHO05D005943 1.4e-58 230.3 226 52.7
Pp3c12_11300 Physcomitrium patens HOM05D004773 ORTHO05D005943 2.5e-58 229.6 189 55.0
SMO367G0365 Selaginella moellendorffii HOM05D004773 ORTHO05D005943 7.2e-58 228.0 182 56.0
Gorai.013G199600 Gossypium raimondii HOM05D004773 ORTHO05D005943 6.1e-57 224.9 185 57.8
unitig_37.g12340 Utricularia gibba HOM05D004773 ORTHO05D005943 1.3e-54 217.2 151 67.5
AagrBONN_evm.TU.Sc2ySwM_362.2127 Anthoceros agrestis HOM05D004773 ORTHO05D005943 4.8e-54 215.3 185 51.9
AUR62014597 Chenopodium quinoa HOM05D004773 ORTHO05D005943 9.1e-53 211.1 182 56.6
Mapoly0004s0110 Marchantia polymorpha HOM05D004773 ORTHO05D005943 2.0e-52 209.9 182 55.5
AUR62014585 Chenopodium quinoa HOM05D004773 ORTHO05D005943 3.8e-51 205.7 182 56.6
VMungo0464G1467 Vigna mungo HOM05D004773 ORTHO05D005943 9.4e-50 201.1 172 55.8
CBR_g32162 Chara braunii HOM05D004773 ORTHO05D001111 1.4e-48 197.2 179 52.0
COL.COLO4_31150 Corchorus olitorius HOM05D004773 ORTHO05D005943 9.7e-47 191.0 145 61.4
Dinv40507 Davidia involucrata HOM05D004773 ORTHO05D005943 1.3e-46 190.7 183 57.4
TPR.G6097 Trifolium pratense HOM05D004773 ORTHO05D005943 6.3e-46 188.3 187 53.5
Thhalv10021316m.g Eutrema salsugineum HOM05D004773 ORTHO05D005943 2.6e-44 183.0 132 65.2
Sp3g02490 Schrenkiella parvula HOM05D004773 ORTHO05D005943 3.4e-31 139.4 232 39.7
CAN.G1247.2 Capsicum annuum HOM05D004773 ORTHO05D005943 1.3e-30 137.5 127 54.3
COL.COLO4_31152 Corchorus olitorius HOM05D007715 ORTHO05D009760 2.2e-27 126.7 72 75.0
HPP92_010162 Vanilla planifolia HOM05D004773 ORTHO05D005943 2.8e-22 109.8 79 60.8
Cre17.g717200 Chlamydomonas reinhardtii HOM05D004773 ORTHO05D005943 3.3e-18 96.3 244 27.5
PRCOL_00005876 Prasinoderma coloniale HOM05D004773 ORTHO05D005943 3.6e-17 92.8 200 32.5
MCO10G115 Micromonas commoda HOM05D004773 ORTHO05D005943 5.2e-16 89.0 213 28.6
TPR.G35071 Trifolium pratense HOM05D004773 ORTHO05D005943 1.2e-15 87.8 52 76.9
AL6G10940 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 5.7e-15 85.5 57 68.4
PGSC0003DMG400004239 Solanum tuberosum HOM05D004773 ORTHO05D005943 1.1e-10 71.2 52 63.5
VMungo0464G0773 Vigna mungo HOM05D004773 ORTHO05D005943 2.5e-10 70.1 36 88.9
SEGI_31644 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 2.8e-09 66.6 53 58.5
AL3G13200 Arabidopsis lyrata HOM05D004773 ORTHO05D005943 1.0e-08 64.7 52 55.8
RcHm_v2.0_Chr3g0466941 Rosa chinensis HOM05D004773 ORTHO05D005943 1.4e-08 64.3 39 71.8
SEGI_00738 Sequoiadendron giganteum HOM05D004773 ORTHO05D005943 3.1e-08 63.2 36 77.8


User provided reference genes

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