Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1382 Papaver somniferum HOM05D007766 ORTHO05D009733 5.8e-161 570.9 293 100.0
PSO478G3523 Papaver somniferum HOM05D007766 ORTHO05D009733 4.7e-126 454.9 263 90.1
PGSC0003DMG400031827 Solanum tuberosum HOM05D007766 ORTHO05D009733 5.5e-34 149.1 223 45.7
Nitab4.5_0000116g0120 Nicotiana tabacum HOM05D007766 ORTHO05D009733 1.0e-32 144.8 226 43.8
Nitab4.5_0000803g0050 Nicotiana tabacum HOM05D007766 ORTHO05D009733 2.3e-32 143.7 222 42.8
Dinv33093 Davidia involucrata HOM05D007766 ORTHO05D009733 1.5e-31 141.0 231 43.7
Sopen09g030400 Solanum pennellii HOM05D007766 ORTHO05D009733 1.9e-31 140.6 237 41.8
Peaxi162Scf00001g00292 Petunia axillaris HOM05D007766 ORTHO05D009733 8.2e-30 135.2 226 43.4
Aqoxy2G02831 Aquilegia oxysepala HOM05D007766 ORTHO05D009733 1.4e-29 134.4 230 40.0
Nn3g21607 Nelumbo nucifera HOM05D007766 ORTHO05D009733 1.8e-29 134.0 259 38.2
Cc01_g21240 Coffea canephora HOM05D007766 ORTHO05D009733 3.1e-29 133.3 259 37.1
RcHm_v2.0_Chr7g0241981 Rosa chinensis HOM05D007766 ORTHO05D009733 6.9e-29 132.1 258 41.1
Actinidia27601 Actinidia chinensis HOM05D007766 ORTHO05D009733 1.5e-28 131.0 211 41.7
TWI36G1235 Tripterygium wilfordii HOM05D007766 ORTHO05D009733 4.5e-28 129.4 224 42.0
CANSAT25G3789 Cannabis sativa HOM05D007766 ORTHO05D009733 1.7e-27 127.5 230 40.4
Sabra14G0092600 Salix brachista HOM05D007766 ORTHO05D009733 1.7e-27 127.5 207 43.0
PGR119G1997 Punica granatum HOM05D007766 ORTHO05D009733 1.4e-26 124.4 238 39.9
Potri.014G124500 Populus trichocarpa HOM05D007766 ORTHO05D009733 1.9e-26 124.0 221 39.8
vmacro02422 Vaccinium macrocarpon HOM05D007766 ORTHO05D009733 5.5e-26 122.5 221 40.7
FvH4_5g39680 Fragaria vesca HOM05D007766 ORTHO05D009733 1.6e-25 120.9 230 40.9
Eucgr.H01072 Eucalyptus grandis HOM05D007766 ORTHO05D009733 2.1e-25 120.6 235 37.4
FAN18G0466 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.1e-25 120.6 255 38.8
FAN18G1064 Fragaria x ananassa HOM05D007766 ORTHO05D009733 2.1e-25 120.6 255 38.8
FAN08G1563 Fragaria x ananassa HOM05D007766 ORTHO05D009733 3.5e-25 119.8 228 40.8
Gohir.D12G131000 Gossypium hirsutum HOM05D007766 ORTHO05D009733 7.9e-25 118.6 216 38.0
Gohir.A12G127500 Gossypium hirsutum HOM05D007766 ORTHO05D009733 1.0e-24 118.2 217 40.6
Haze_04998 Corylus avellana HOM05D007766 ORTHO05D009733 1.3e-24 117.9 282 35.8
Gorai.008G142300 Gossypium raimondii HOM05D007766 ORTHO05D009733 1.3e-24 117.9 216 38.0
Lalb_Chr15g0078421 Lupinus albus HOM05D007766 ORTHO05D009733 1.3e-24 117.9 168 42.3
VMungo1383G0118 Vigna mungo HOM05D007766 ORTHO05D009733 2.3e-24 117.1 214 38.8
Thecc.01G308600 Theobroma cacao HOM05D007766 ORTHO05D009733 8.7e-24 115.2 222 37.4
Duzib138G0131 Durio zibethinus HOM05D007766 ORTHO05D009733 1.5e-23 114.4 222 35.6
AT1G02700 Arabidopsis thaliana HOM05D007766 ORTHO05D009733 3.3e-23 113.2 277 37.5
Lj1C21T2 Lonicera japonica HOM05D007766 ORTHO05D009733 3.3e-23 113.2 228 39.9
GSVIVG01028075001 Vitis vinifera HOM05D007766 ORTHO05D009733 3.3e-23 113.2 252 35.3
AL1G12070 Arabidopsis lyrata HOM05D007766 ORTHO05D009733 9.7e-23 111.7 277 37.2
CSS0041323 Camellia sinensis var. sinensis HOM05D007766 ORTHO05D009733 9.7e-23 111.7 201 39.8
Lj1g0002879 Lotus japonicus HOM05D007766 ORTHO05D009733 1.3e-22 111.3 216 38.4
COL.COLO4_23278 Corchorus olitorius HOM05D007766 ORTHO05D009733 2.2e-22 110.5 222 38.7
Glyma.19G214500 Glycine max HOM05D007766 ORTHO05D009733 2.2e-22 110.5 208 38.0
Rhsim13G0007300 Rhododendron simsii HOM05D007766 ORTHO05D009733 2.2e-22 110.5 197 41.1
Carub.0001s0178 Capsella rubella HOM05D007766 ORTHO05D009733 2.8e-22 110.2 277 37.5
ClCG09G005330 Citrullus lanatus HOM05D007766 ORTHO05D009733 6.3e-22 109.0 274 35.8
QL12p028831 Quercus lobata HOM05D007766 ORTHO05D009733 6.3e-22 109.0 158 43.7
MBI18_g25084_MAGBIO Magnolia biondii HOM05D007766 ORTHO05D009733 8.2e-22 108.6 233 36.9
CARHR002000 Cardamine hirsuta HOM05D007766 ORTHO05D009733 1.1e-21 108.2 277 37.2
arahy.Tifrunner.gnm1.ann1.28FBJ8 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.4e-21 107.8 174 40.2
Migut.D00109 Erythranthe guttata HOM05D007766 ORTHO05D009733 1.4e-21 107.8 262 33.6
Manes.05G001200 Manihot esculenta HOM05D007766 ORTHO05D009733 1.4e-21 107.8 224 36.2
MD03G1298400 Malus domestica HOM05D007766 ORTHO05D009733 1.8e-21 107.5 240 38.3
Phvul.001G211300 Phaseolus vulgaris HOM05D007766 ORTHO05D009733 3.1e-21 106.7 212 36.8
Prupe.8G268800 Prunus persica HOM05D007766 ORTHO05D009733 3.1e-21 106.7 210 38.1
TPR.G20299 Trifolium pratense HOM05D007766 ORTHO05D009733 9.0e-21 105.1 224 35.3
arahy.Tifrunner.gnm1.ann1.MEA9U7 Arachis hypogaea HOM05D007766 ORTHO05D009733 1.2e-20 104.8 228 34.2
Cpa.g.sc151.50 Carica papaya HOM05D007766 ORTHO05D009733 1.2e-20 104.8 223 36.8
Medtr7g109280 Medicago truncatula HOM05D007766 ORTHO05D009733 1.5e-20 104.4 222 34.2
Ca_09199_v3 Cicer arietinum L. HOM05D007766 ORTHO05D009733 2.0e-20 104.0 232 35.8
Psat3g020680 Pisum sativum HOM05D007766 ORTHO05D009733 2.6e-20 103.6 218 36.2
CiPaw.07G114200 Carya illinoinensis HOM05D007766 ORTHO05D009733 4.5e-20 102.8 276 34.1
CsaV3_7G029750 Cucumis sativus L. HOM05D007766 ORTHO05D009733 4.5e-20 102.8 229 33.6
TAR636G1646 Trochodendron aralioides HOM05D007766 ORTHO05D009733 5.9e-20 102.4 110 56.4
Lsat_1_v5_gn_5_190141 Lactuca sativa HOM05D007766 ORTHO05D009733 1.3e-19 101.3 269 33.1
ECA248G3735 Erigeron canadensis HOM05D007766 ORTHO05D009733 2.9e-19 100.1 240 34.2
BolC5t28921H Brassica oleracea HOM05D000768 ORTHO05D000665 1.4e-18 97.8 269 37.5
SGA_v2.0_scaffold334G49048 Striga asiatica HOM05D007766 ORTHO05D009733 1.9e-18 97.4 217 34.6
Ah.15g092870 Amaranthus hybridus HOM05D007766 ORTHO05D009733 4.2e-18 96.3 157 45.2
C05p01390 Brassica napus HOM05D000768 ORTHO05D000665 4.2e-18 96.3 269 37.9
BraA10t42417Z Brassica rapa HOM05D000768 ORTHO05D000665 7.2e-18 95.5 234 36.8
Sed0007654 Sechium edule HOM05D007766 ORTHO05D009733 4.6e-17 92.8 219 33.3
Sc17g0002970 Simmondsia chinensis HOM05D007766 ORTHO05D009733 4.6e-17 92.8 221 34.8
Atru.chr5.1065 Acer truncatum HOM05D007766 ORTHO05D009733 7.9e-17 92.0 262 30.9
HanXRQChr01g0000891 Helianthus annuus HOM05D007766 ORTHO05D009733 1.0e-16 91.7 224 34.4
MELO3C015946.2 Cucumis melo HOM05D007766 ORTHO05D009733 6.7e-16 89.0 283 31.8
CDE05G0244 Ceratophyllum demersum HOM05D007766 ORTHO05D009733 1.1e-15 88.2 127 46.5
Aa31LG1G9860 Aethionema arabicum HOM05D007766 ORTHO05D009733 1.5e-15 87.8 219 38.8
EL10Ac7g17611 Beta vulgaris HOM05D007766 ORTHO05D009733 2.0e-15 87.4 207 35.7
Ciclev10024028m.g Citrus clementina HOM05D007766 ORTHO05D009733 7.4e-15 85.5 158 41.1
DCAR_002867 Daucus carota HOM05D007766 ORTHO05D009733 9.7e-15 85.1 230 36.5
unitig_60.g25659 Utricularia gibba HOM05D001839 ORTHO05D001867 1.1e-13 81.6 139 40.3
A10p01420 Brassica napus HOM05D000768 ORTHO05D000665 1.4e-13 81.3 234 36.8
Cfa005851 Carpinus fangiana HOM05D007766 ORTHO05D009733 3.1e-13 80.1 276 30.1
Thhalv10008633m.g Eutrema salsugineum HOM05D007766 ORTHO05D009733 4.1e-13 79.7 277 33.9
Sp1g01680 Schrenkiella parvula HOM05D007766 ORTHO05D009733 5.0e-11 72.8 267 33.7
Solyc09g075600.3 Solanum lycopersicum HOM05D007766 ORTHO05D009733 3.6e-09 66.6 73 54.8
Zm00001eb330520 Zea mays HOM05D007766 ORTHO05D009733 5.1e-08 62.8 223 28.3
Actinidia21421 Actinidia chinensis HOM05D007766 ORTHO05D009733 2.8e-06 57.0 76 52.6


User provided reference genes

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