Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1301 Papaver somniferum HOM05D003733 ORTHO05D004035 1.2e-230 803.1 491 100.0
PSO832G4530 Papaver somniferum HOM05D003733 ORTHO05D004035 3.4e-182 642.1 500 79.6
PSO210G1228 Papaver somniferum HOM05D003733 ORTHO05D004035 3.7e-120 436.0 471 57.3
PSO761G0336 Papaver somniferum HOM05D003733 ORTHO05D004035 6.0e-118 428.7 471 57.7
QL06p037705 Quercus lobata HOM05D003733 ORTHO05D004035 5.0e-56 223.0 452 39.6
Actinidia36390 Actinidia chinensis HOM05D003733 ORTHO05D004035 3.3e-52 210.3 460 40.7
Nn1g05776 Nelumbo nucifera HOM05D003733 ORTHO05D004035 4.4e-52 209.9 421 39.0
Dinv26992 Davidia involucrata HOM05D003733 ORTHO05D004035 2.2e-51 207.6 451 40.6
Cfa006814 Carpinus fangiana HOM05D003733 ORTHO05D004035 3.8e-48 196.8 480 38.5
TAR381G0096 Trochodendron aralioides HOM05D003733 ORTHO05D004035 5.0e-48 196.4 459 40.5
Rhsim10G0187300 Rhododendron simsii HOM05D006560 ORTHO05D008164 4.2e-47 193.4 473 37.8
CSS0008611 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 6.1e-46 189.5 514 35.6
vmacro07413 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 8.0e-46 189.1 457 36.8
TAR376G0930 Trochodendron aralioides HOM05D003733 ORTHO05D004035 3.0e-45 187.2 449 38.8
TPR.G1045 Trifolium pratense HOM05D003733 ORTHO05D008786 6.8e-45 186.0 436 37.8
TAR625G0952 Trochodendron aralioides HOM05D003733 ORTHO05D004035 1.2e-44 185.3 417 37.4
RcHm_v2.0_Chr2g0109681 Rosa chinensis HOM05D003733 ORTHO05D004035 1.5e-44 184.9 487 37.0
Aqoxy4G03244 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 3.4e-44 183.7 420 38.6
Medtr5g030610 Medicago truncatula HOM05D003733 ORTHO05D004035 3.4e-44 183.7 460 39.1
Medtr5g430710 Medicago truncatula HOM05D003733 ORTHO05D008786 3.4e-44 183.7 460 39.1
Haze_03945 Corylus avellana HOM05D003733 ORTHO05D004035 1.3e-43 181.8 471 36.5
Actinidia11935 Actinidia chinensis HOM05D003733 ORTHO05D004035 1.7e-43 181.4 506 41.3
vmacro20437 Vaccinium macrocarpon HOM05D003733 ORTHO05D004035 4.8e-43 179.9 501 39.9
GSVIVG01003708001 Vitis vinifera HOM05D003733 ORTHO05D004035 1.4e-42 178.3 459 38.1
Prupe.6G211200 Prunus persica HOM05D003733 ORTHO05D004035 9.1e-42 175.6 479 33.6
Lj4A174T33 Lonicera japonica HOM05D003733 ORTHO05D004035 1.6e-41 174.9 477 39.2
Potri.007G009700 Populus trichocarpa HOM05D003733 ORTHO05D004035 4.5e-41 173.3 374 37.2
CiPaw.12G004300 Carya illinoinensis HOM05D003733 ORTHO05D004035 5.0e-40 169.9 503 36.0
Nitab4.5_0000396g0250 Nicotiana tabacum HOM05D003733 ORTHO05D004035 7.2e-39 166.0 442 39.8
TWI53G0148 Tripterygium wilfordii HOM05D003733 ORTHO05D004035 1.6e-38 164.9 452 36.9
ClCG01G018090 Citrullus lanatus HOM05D003733 ORTHO05D008786 3.0e-37 160.6 429 35.0
Glyma.08G272800 Glycine max HOM05D003733 ORTHO05D004035 5.2e-37 159.8 454 37.7
Ca_06073_v3 Cicer arietinum L. HOM05D003733 ORTHO05D004035 6.8e-37 159.5 417 37.2
Cc07_g07720 Coffea canephora HOM05D003733 ORTHO05D004035 8.8e-37 159.1 481 35.3
Psat2g135720 Pisum sativum HOM05D003733 ORTHO05D004035 8.8e-37 159.1 425 34.6
Oeu054739.1 Olea europaea HOM05D003733 ORTHO05D004035 3.4e-36 157.1 402 35.3
Sabra07G0007400 Salix brachista HOM05D003733 ORTHO05D008786 3.4e-36 157.1 421 33.5
Lalb_Chr16g0381411 Lupinus albus HOM05D003733 ORTHO05D004035 5.7e-36 156.4 465 36.3
CAN.G1061.16 Capsicum annuum HOM05D003733 ORTHO05D004035 1.7e-35 154.8 453 35.3
Lj4g0014652 Lotus japonicus HOM05D003733 ORTHO05D004035 2.8e-35 154.1 399 36.6
PGR102G0988 Punica granatum HOM05D003733 ORTHO05D004035 1.1e-34 152.1 526 31.6
VMungo1215G3108 Vigna mungo HOM05D003733 ORTHO05D004035 1.1e-34 152.1 435 37.0
Migut.L00442 Erythranthe guttata HOM05D003733 ORTHO05D004035 4.1e-34 150.2 464 35.3
Manes.12G120000 Manihot esculenta HOM05D003733 ORTHO05D004035 5.4e-34 149.8 367 35.1
Glyma.01G097200 Glycine max HOM05D003733 ORTHO05D004035 3.5e-33 147.1 407 35.6
SalBow7G4044 Salvia bowleyana HOM05D003733 ORTHO05D004035 3.5e-33 147.1 524 35.3
HanXRQChr17g0561681 Helianthus annuus HOM05D003733 ORTHO05D004035 5.9e-33 146.4 444 33.6
Lj2g0016248 Lotus japonicus HOM05D003733 ORTHO05D004035 7.7e-33 146.0 472 37.1
PGSC0003DMG400030618 Solanum tuberosum HOM05D003733 ORTHO05D004035 1.3e-32 145.2 449 36.3
FvH4_1g18820 Fragaria vesca HOM05D003733 ORTHO05D004035 3.8e-32 143.7 566 30.4
Lj3g0005458 Lotus japonicus HOM05D003733 ORTHO05D004035 3.8e-32 143.7 274 39.4
FAN23G1272 Fragaria x ananassa HOM05D003733 ORTHO05D004035 5.0e-32 143.3 537 31.8
FAN19G3013 Fragaria x ananassa HOM05D003733 ORTHO05D004035 6.6e-32 142.9 567 30.3
Atru.chr3.1125_Atru.chr3.1126 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-31 142.1 452 36.5
Atru.chr3.1134_Atru.chr3.1135 Acer truncatum HOM05D003733 ORTHO05D004035 1.1e-31 142.1 452 36.5
Thecc.01G082000 Theobroma cacao HOM05D003733 ORTHO05D004035 1.5e-31 141.7 440 36.8
Potri.005G148700 Populus trichocarpa HOM05D003733 ORTHO05D004035 2.5e-31 141.0 421 32.3
arahy.Tifrunner.gnm1.ann1.DCX0GA Arachis hypogaea HOM05D003733 ORTHO05D004035 5.6e-31 139.8 408 35.3
arahy.Tifrunner.gnm1.ann1.KS8TVJ Arachis hypogaea HOM05D003733 ORTHO05D004035 5.6e-31 139.8 408 35.3
Ciclev10025536m.g Citrus clementina HOM05D003733 ORTHO05D004035 7.3e-31 139.4 463 32.0
HanXRQChr12g0366081 Helianthus annuus HOM05D003733 ORTHO05D004035 7.3e-31 139.4 287 39.0
Phvul.002G139100 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 9.5e-31 139.0 475 33.7
CANSAT01G3253 Cannabis sativa HOM05D003733 ORTHO05D004035 2.8e-30 137.5 220 44.1
Sopen02g036340 Solanum pennellii HOM05D003733 ORTHO05D004035 4.7e-30 136.7 434 35.3
MSTRG.3501 Avicennia marina HOM05D003733 ORTHO05D004035 8.0e-30 136.0 499 32.7
arahy.Tifrunner.gnm1.ann1.24SHUP Arachis hypogaea HOM05D003733 ORTHO05D004035 2.3e-29 134.4 417 34.1
Gohir.D03G033400 Gossypium hirsutum HOM05D003733 ORTHO05D004035 8.9e-29 132.5 229 43.2
unitig_0.g2606 Utricularia gibba HOM05D003733 ORTHO05D004035 8.9e-29 132.5 466 31.5
arahy.Tifrunner.gnm1.ann1.EGH0HL Arachis hypogaea HOM05D003733 ORTHO05D004035 2.0e-28 131.3 413 33.9
MD01G1046400 Malus domestica HOM05D003733 ORTHO05D004035 2.0e-28 131.3 484 30.2
Nitab4.5_0014307g0010 Nicotiana tabacum HOM05D003733 ORTHO05D004035 2.0e-28 131.3 476 32.6
VMungo0251G1204 Vigna mungo HOM05D003733 ORTHO05D004035 2.0e-28 131.3 291 38.8
Gorai.003G035000 Gossypium raimondii HOM05D003733 ORTHO05D004035 2.6e-28 131.0 229 42.8
Phvul.003G285300 Phaseolus vulgaris HOM05D003733 ORTHO05D004035 3.4e-28 130.6 501 32.9
CSS0020555 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 5.7e-28 129.8 371 35.6
CSS0006986 Camellia sinensis var. sinensis HOM05D003733 ORTHO05D004035 7.5e-28 129.4 367 36.8
MBI16_g20893_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 7.5e-28 129.4 171 49.1
ATR0584G133 Amborella trichopoda HOM05D003733 ORTHO05D004035 1.3e-27 128.6 426 32.6
BcaB06g27818 Brassica carinata HOM05D003733 ORTHO05D004035 1.7e-27 128.3 502 30.1
Duzib264G0286 Durio zibethinus HOM05D003733 ORTHO05D004035 2.9e-27 127.5 465 34.2
MD02G1269400 Malus domestica HOM05D003733 ORTHO05D004035 3.7e-27 127.1 429 31.9
Nitab4.5_0000465g0130 Nicotiana tabacum HOM05D003733 ORTHO05D004035 3.7e-27 127.1 469 31.8
Manes.13G105200 Manihot esculenta HOM05D003733 ORTHO05D004035 6.4e-27 126.3 371 32.6
VMungo1309G1560 Vigna mungo HOM05D003733 ORTHO05D004035 6.4e-27 126.3 292 36.6
Lsat_1_v5_gn_8_34760 Lactuca sativa HOM05D003733 ORTHO05D004035 1.1e-26 125.6 291 36.8
MD16G1281700 Malus domestica HOM05D003733 ORTHO05D004035 1.1e-26 125.6 473 30.4
SGA_v2.0_scaffold13G06400 Striga asiatica HOM05D003733 ORTHO05D004035 1.4e-26 125.2 513 30.2
Sed0009716 Sechium edule HOM05D003733 ORTHO05D004035 1.8e-26 124.8 488 31.8
CiPaw.12G004100 Carya illinoinensis HOM05D003733 ORTHO05D004035 2.4e-26 124.4 345 35.4
MELO3C007686.2 Cucumis melo HOM05D003733 ORTHO05D004035 2.4e-26 124.4 506 30.8
Nitab4.5_0000093g0190 Nicotiana tabacum HOM05D003733 ORTHO05D004035 4.1e-26 123.6 416 36.5
Oeu054741.2 Olea europaea HOM05D003733 ORTHO05D004035 7.0e-26 122.9 419 32.5
THA.LOC104804189 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 9.2e-26 122.5 479 32.4
Solyc02g091730.3 Solanum lycopersicum HOM05D003733 ORTHO05D004035 1.2e-25 122.1 299 34.1
ATR0706G065 Amborella trichopoda HOM05D003733 ORTHO05D004035 2.0e-25 121.3 428 32.5
CDE10G0903 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 2.0e-25 121.3 452 32.7
CsaV3_6G044630 Cucumis sativus L. HOM05D003733 ORTHO05D004035 2.7e-25 120.9 519 29.9
ECA233G0477 Erigeron canadensis HOM05D003733 ORTHO05D004035 2.7e-25 120.9 226 41.2
COL.COLO4_11664 Corchorus olitorius HOM05D000513 ORTHO05D008786 4.6e-25 120.2 237 40.1
THA.LOC104807653 Tarenaya hassleriana HOM05D003733 ORTHO05D004035 5.9e-25 119.8 200 40.0
Sc03g0000640 Simmondsia chinensis HOM05D003733 ORTHO05D004035 1.0e-24 119.0 494 32.0
PGSC0003DMG400016686 Solanum tuberosum HOM05D003733 ORTHO05D004035 3.9e-24 117.1 313 33.9
BraA04t17347Z Brassica rapa HOM05D003733 ORTHO05D004035 8.6e-24 115.9 522 30.1
Eucgr.D00182 Eucalyptus grandis HOM05D003733 ORTHO05D004035 1.5e-23 115.2 544 30.3
CAN.G11.21 Capsicum annuum HOM05D003733 ORTHO05D004035 1.9e-23 114.8 298 33.2
DCAR_025843 Daucus carota HOM05D003733 ORTHO05D004035 1.9e-23 114.8 477 32.3
Gohir.A02G147000 Gossypium hirsutum HOM05D003733 ORTHO05D004035 1.9e-23 114.8 493 36.3
SalBow5G1957 Salvia bowleyana HOM05D003733 ORTHO05D004035 1.9e-23 114.8 508 32.3
Carub.0004s0185 Capsella rubella HOM05D003733 ORTHO05D004035 4.3e-23 113.6 199 40.7
SGA_v2.0_scaffold174G39242 Striga asiatica HOM05D003733 ORTHO05D004035 5.6e-23 113.2 485 30.9
Aa31LG7G14100 Aethionema arabicum HOM05D003733 ORTHO05D004035 7.3e-23 112.8 582 28.2
Solyc03g043760.4 Solanum lycopersicum HOM05D003733 ORTHO05D004035 9.5e-23 112.5 312 33.0
A04p17190 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-22 112.1 485 28.0
C04p52030 Brassica napus HOM05D002219 ORTHO05D002713 1.2e-22 112.1 499 29.7
Sp4g01710 Schrenkiella parvula HOM05D003733 ORTHO05D004035 1.6e-22 111.7 476 29.4
Peaxi162Scf00118g00109 Petunia axillaris HOM05D003733 ORTHO05D004035 4.7e-22 110.2 512 33.6
Sopen03g007620 Solanum pennellii HOM05D003733 ORTHO05D004035 4.7e-22 110.2 312 33.0
A09p57340 Brassica napus HOM05D003733 ORTHO05D004035 1.0e-21 109.0 495 28.9
BolC4t26775H Brassica oleracea HOM05D003733 ORTHO05D004035 1.8e-21 108.2 522 29.9
Duzib147G1539 Durio zibethinus HOM05D003733 ORTHO05D004035 3.1e-21 107.5 452 33.4
Sed0014908 Sechium edule HOM05D003733 ORTHO05D004035 5.2e-21 106.7 519 26.6
C08p40430 Brassica napus HOM05D003733 ORTHO05D004035 8.9e-21 105.9 490 28.2
BolC8t51612H Brassica oleracea HOM05D003733 ORTHO05D004035 8.9e-21 105.9 490 28.2
Sc16g0000790 Simmondsia chinensis HOM05D003733 ORTHO05D004035 8.9e-21 105.9 216 44.0
AL4G12240 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 3.4e-20 104.0 529 31.4
Lalb_Chr09g0325721 Lupinus albus HOM05D003733 ORTHO05D004035 3.7e-19 100.5 416 29.6
HPP92_024603 Vanilla planifolia HOM05D003733 ORTHO05D004035 2.4e-18 97.8 409 29.3
CARHR114000 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.2e-18 97.4 483 27.3
CDE10G0649 Ceratophyllum demersum HOM05D003733 ORTHO05D004035 7.0e-18 96.3 475 29.9
AT2G22720 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 1.2e-17 95.5 535 27.9
BraA09t41127Z Brassica rapa HOM05D003733 ORTHO05D004035 7.8e-17 92.8 487 28.7
SEGI_33741 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 1.0e-16 92.4 427 30.7
Hund23622 Selenicereus undatus HOM05D003733 ORTHO05D004035 1.5e-15 88.6 411 29.7
SHI12093 Sapria himalayana HOM05D003733 ORTHO05D004035 4.3e-15 87.0 146 42.5
CAN.G630.65 Capsicum annuum HOM05D003733 ORTHO05D004035 7.3e-15 86.3 430 28.6
EL10As13g24049 Beta vulgaris HOM05D003733 ORTHO05D004035 1.6e-14 85.1 439 28.0
Aqoxy6G00872 Aquilegia oxysepala HOM05D003733 ORTHO05D004035 2.8e-14 84.3 411 29.4
CARHR246250 Cardamine hirsuta HOM05D003733 ORTHO05D004035 3.6e-14 84.0 268 29.9
C01p01330 Brassica napus HOM05D003733 ORTHO05D004035 6.2e-14 83.2 408 27.0
A01p01170 Brassica napus HOM05D003733 ORTHO05D004035 8.1e-14 82.8 406 27.1
AUR62003259 Chenopodium quinoa HOM05D003733 ORTHO05D004035 1.4e-13 82.0 418 28.9
Cpa.g.sc129.28 Carica papaya HOM05D003733 ORTHO05D004035 2.3e-13 81.3 78 53.8
BolC1t00129H Brassica oleracea HOM05D003733 ORTHO05D004035 4.0e-13 80.5 415 28.0
Zm00001eb429410 Zea mays HOM05D003733 ORTHO05D004035 4.0e-13 80.5 516 25.2
AUR62027209 Chenopodium quinoa HOM05D003733 ORTHO05D004035 5.2e-13 80.1 416 29.1
Thhalv10000080m.g Eutrema salsugineum HOM05D003733 ORTHO05D004035 1.2e-12 79.0 196 33.2
AL7G12820 Arabidopsis lyrata HOM05D003733 ORTHO05D004035 1.5e-12 78.6 196 33.2
Os11g0296800 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 3.4e-12 77.4 501 28.1
unitig_88.g27718 Utricularia gibba HOM05D003733 ORTHO05D004035 4.4e-12 77.0 410 25.6
BraA01t00115Z Brassica rapa HOM05D003733 ORTHO05D004035 5.8e-12 76.6 414 27.1
Prupe.1G068500 Prunus persica HOM05D003733 ORTHO05D004035 5.8e-12 76.6 145 40.7
Os02g0664400 Oryza sativa ssp. japonica HOM05D003733 ORTHO05D004035 2.9e-11 74.3 425 28.9
SEGI_29083 Sequoiadendron giganteum HOM05D003733 ORTHO05D004035 2.9e-11 74.3 528 25.8
BcaNung00967 Brassica carinata HOM05D003733 ORTHO05D004035 3.7e-11 73.9 408 27.0
AT4G37860 Arabidopsis thaliana HOM05D003733 ORTHO05D004035 4.1e-10 70.5 424 26.9
Oeu012608.1 Olea europaea HOM05D003733 ORTHO05D004035 9.2e-10 69.3 78 48.7
Dinv36994 Davidia involucrata HOM05D003733 ORTHO05D004035 1.2e-09 68.9 149 37.6
Manes.06G161600 Manihot esculenta HOM05D003733 ORTHO05D004035 6.0e-09 66.6 181 33.7
MBI16_g41329_MAGBIO Magnolia biondii HOM05D003733 ORTHO05D004035 1.5e-07 62.0 408 28.7
Prupe.2G308100 Prunus persica HOM05D003733 ORTHO05D004035 4.3e-07 60.5 194 29.4
MD15G1405500 Malus domestica HOM05D005427 ORTHO05D006461 7.3e-07 59.7 145 35.9
Sp7g35500 Schrenkiella parvula HOM05D003733 ORTHO05D004035 3.6e-06 57.4 386 25.9


User provided reference genes

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