Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1275 Papaver somniferum HOM05D005346 ORTHO05D007051 3.0e-120 435.3 231 100.0
PSO478G1917 Papaver somniferum HOM05D005346 ORTHO05D007051 1.1e-114 416.8 226 98.2
TWI60G0731 Tripterygium wilfordii HOM05D005346 ORTHO05D007051 2.5e-74 282.7 238 69.3
TAR629G0356 Trochodendron aralioides HOM05D005346 ORTHO05D007051 9.5e-74 280.8 232 70.7
Haze_09052 Corylus avellana HOM05D005346 ORTHO05D007051 1.6e-73 280.0 233 67.4
Cfa012017 Carpinus fangiana HOM05D005346 ORTHO05D007051 4.7e-73 278.5 233 67.4
Dinv39076 Davidia involucrata HOM05D005346 ORTHO05D007051 2.3e-72 276.2 236 68.6
Duzib084G0498 Durio zibethinus HOM05D005346 ORTHO05D007051 4.0e-72 275.4 235 67.2
GSVIVG01004909001 Vitis vinifera HOM05D005346 ORTHO05D007051 4.0e-72 275.4 233 69.1
Actinidia02088 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.5e-71 273.5 243 65.8
Nn4g26377 Nelumbo nucifera HOM05D005346 ORTHO05D007051 1.5e-71 273.5 236 70.8
CSS0047104 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 7.5e-71 271.2 187 77.5
Potri.003G115300 Populus trichocarpa HOM05D005346 ORTHO05D007051 9.8e-71 270.8 235 68.5
Manes.01G073500 Manihot esculenta HOM05D005346 ORTHO05D007051 1.7e-70 270.0 237 66.7
Gorai.003G166600 Gossypium raimondii HOM05D005346 ORTHO05D007051 2.2e-70 269.6 236 64.8
MBI12_g34008_MAGBIO Magnolia biondii HOM05D005346 ORTHO05D007051 2.2e-70 269.6 233 68.7
Gohir.A03G011800 Gossypium hirsutum HOM05D005346 ORTHO05D007051 2.9e-70 269.2 237 65.0
Rhsim07G0101400 Rhododendron simsii HOM05D005346 ORTHO05D007051 2.9e-70 269.2 234 65.8
CSS0010264 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.7e-70 268.9 187 77.0
Cpa.g.sc29.89 Carica papaya HOM05D005346 ORTHO05D007051 3.7e-70 268.9 239 68.2
Eucgr.E00475 Eucalyptus grandis HOM05D005346 ORTHO05D007051 4.9e-70 268.5 231 67.5
MELO3C013984.2 Cucumis melo HOM05D005346 ORTHO05D007051 3.2e-69 265.8 234 66.7
RcHm_v2.0_Chr7g0201521 Rosa chinensis HOM05D005346 ORTHO05D007051 3.2e-69 265.8 230 68.3
Potri.001G117500 Populus trichocarpa HOM05D005346 ORTHO05D007051 4.1e-69 265.4 237 66.2
Atru.chr9.1434 Acer truncatum HOM05D005346 ORTHO05D007051 2.7e-68 262.7 244 65.2
ATR0579G161 Amborella trichopoda HOM05D005346 ORTHO05D007051 2.7e-68 262.7 186 75.8
CsaV3_3G003190 Cucumis sativus L. HOM05D005346 ORTHO05D007051 6.0e-68 261.5 234 65.8
MD04G1079400 Malus domestica HOM05D005346 ORTHO05D007051 7.8e-68 261.2 230 67.4
DCAR_006800 Daucus carota HOM05D005346 ORTHO05D007051 1.0e-67 260.8 236 63.6
Prupe.5G079700 Prunus persica HOM05D005346 ORTHO05D007051 1.0e-67 260.8 230 67.0
Sopen08g027860 Solanum pennellii HOM05D005346 ORTHO05D007051 1.0e-67 260.8 242 62.8
COL.COLO4_23877 Corchorus olitorius HOM05D005346 ORTHO05D007051 1.3e-67 260.4 254 61.8
Ciclev10021953m.g Citrus clementina HOM05D005346 ORTHO05D007051 2.3e-67 259.6 184 75.5
Solyc08g079490.4 Solanum lycopersicum HOM05D005346 ORTHO05D007051 2.3e-67 259.6 242 62.0
CSS0033087 Camellia sinensis var. sinensis HOM05D005346 ORTHO05D007051 3.0e-67 259.2 250 62.4
Cc08_g13250 Coffea canephora HOM05D005346 ORTHO05D007051 3.9e-67 258.8 234 65.0
QL05p030033 Quercus lobata HOM05D005346 ORTHO05D007051 3.9e-67 258.8 239 66.5
QL12p015018 Quercus lobata HOM05D005346 ORTHO05D007051 3.9e-67 258.8 239 66.5
CiPaw.12G104700 Carya illinoinensis HOM05D005346 ORTHO05D007051 6.6e-67 258.1 185 76.2
Sabra03G0079900 Salix brachista HOM05D005346 ORTHO05D007051 8.6e-67 257.7 168 82.1
Nitab4.5_0012948g0030 Nicotiana tabacum HOM05D005346 ORTHO05D007051 1.5e-66 256.9 247 61.9
Peaxi162Scf00271g00130 Petunia axillaris HOM05D005346 ORTHO05D007051 1.5e-66 256.9 228 64.0
Sed0008355 Sechium edule HOM05D005346 ORTHO05D007051 1.5e-66 256.9 269 59.5
FvH4_5g00690 Fragaria vesca HOM05D005346 ORTHO05D007051 1.9e-66 256.5 232 65.9
PGR042G0462 Punica granatum HOM05D005346 ORTHO05D007051 1.9e-66 256.5 232 64.7
Aqoxy7G00648 Aquilegia oxysepala HOM05D005346 ORTHO05D007051 3.3e-66 255.8 236 61.9
FAN04G2793 Fragaria x ananassa HOM05D000062 ORTHO05D007051 9.5e-66 254.2 232 65.5
FAN13G0616 Fragaria x ananassa HOM05D005346 ORTHO05D007051 1.2e-65 253.8 232 65.5
HanXRQChr17g0549091 Helianthus annuus HOM05D005346 ORTHO05D007051 2.1e-65 253.1 234 66.2
CAN.G630.80 Capsicum annuum HOM05D005346 ORTHO05D007051 2.8e-65 252.7 178 75.8
CANSAT21G2498 Cannabis sativa HOM05D005346 ORTHO05D007051 1.8e-64 250.0 234 62.4
THA.LOC104809446 Tarenaya hassleriana HOM05D005346 ORTHO05D007051 6.8e-64 248.1 241 63.1
TAR629G0085 Trochodendron aralioides HOM05D005346 ORTHO05D007051 8.9e-64 247.7 175 78.9
Hma1.2p1_0138F.1_g063170 Hydrangea macrophylla HOM05D005346 ORTHO05D007051 2.0e-63 246.5 185 72.4
arahy.Tifrunner.gnm1.ann1.FP1HKG Arachis hypogaea HOM05D005346 ORTHO05D007051 2.6e-63 246.1 189 72.5
Lsat_1_v5_gn_6_9800 Lactuca sativa HOM05D005346 ORTHO05D007051 4.4e-63 245.4 188 71.8
PGSC0003DMG400003934 Solanum tuberosum HOM05D005346 ORTHO05D007051 5.8e-63 245.0 273 55.7
VMungo1215G1290 Vigna mungo HOM05D005346 ORTHO05D007051 2.2e-62 243.0 227 63.0
Oeu016508.1 Olea europaea HOM05D005346 ORTHO05D007051 2.9e-62 242.7 240 59.6
Sabra01G0090200 Salix brachista HOM05D005346 ORTHO05D007051 2.9e-62 242.7 168 78.6
A09p15920 Brassica napus HOM05D005346 ORTHO05D007051 3.7e-62 242.3 236 61.4
BraA09t37228Z Brassica rapa HOM05D005346 ORTHO05D007051 3.7e-62 242.3 236 61.4
Phvul.003G215000 Phaseolus vulgaris HOM05D005346 ORTHO05D007051 4.9e-62 241.9 180 73.3
Sc22g0000580 Simmondsia chinensis HOM05D005346 ORTHO05D007051 4.9e-62 241.9 186 71.5
Lalb_Chr05g0225391 Lupinus albus HOM05D005346 ORTHO05D007051 6.4e-62 241.5 180 74.4
BcaC04g22452 Brassica carinata HOM05D005346 ORTHO05D007051 8.3e-62 241.1 236 61.0
AUR62017389 Chenopodium quinoa HOM05D005346 ORTHO05D007051 8.3e-62 241.1 234 60.3
Lj4g0017997 Lotus japonicus HOM05D005346 ORTHO05D007051 1.1e-61 240.7 180 73.3
EL10Ac5g12617 Beta vulgaris HOM05D005346 ORTHO05D007051 1.4e-61 240.4 234 62.4
Glyma.17G135200 Glycine max HOM05D005346 ORTHO05D007051 1.9e-61 240.0 181 72.9
BolC9t54826H Brassica oleracea HOM05D005346 ORTHO05D007051 2.4e-61 239.6 236 60.6
Carub.0002s0213 Capsella rubella HOM05D005346 ORTHO05D007051 3.2e-61 239.2 237 61.2
AUR62010513 Chenopodium quinoa HOM05D005346 ORTHO05D007051 3.2e-61 239.2 234 59.4
MSTRG.25547 Avicennia marina HOM05D005346 ORTHO05D007051 4.1e-61 238.8 236 58.9
SGA_v2.0_scaffold120G32813 Striga asiatica HOM05D002260 ORTHO05D000476 4.1e-61 238.8 232 57.8
C09p19170 Brassica napus HOM05D005346 ORTHO05D007051 5.4e-61 238.4 236 60.6
CDE11G0613 Ceratophyllum demersum HOM05D005346 ORTHO05D007051 7.0e-61 238.0 181 71.8
Thhalv10023661m.g Eutrema salsugineum HOM05D005346 ORTHO05D007051 1.6e-60 236.9 238 60.1
Medtr4g102230 Medicago truncatula HOM05D005346 ORTHO05D007051 1.6e-60 236.9 182 75.3
AL2G12910 Arabidopsis lyrata HOM05D005346 ORTHO05D007051 2.7e-60 236.1 236 59.7
BcaB07g31363 Brassica carinata HOM05D005346 ORTHO05D007051 6.0e-60 235.0 237 59.9
Zm00001eb010680 Zea mays HOM05D005346 ORTHO05D007051 6.0e-60 235.0 183 68.9
AT1G62850 Arabidopsis thaliana HOM05D005346 ORTHO05D007051 7.8e-60 234.6 236 61.0
Migut.E01045 Erythranthe guttata HOM05D005346 ORTHO05D007051 1.0e-59 234.2 247 56.3
Psat4g068640 Pisum sativum HOM05D005346 ORTHO05D007051 1.0e-59 234.2 181 73.5
HPP92_003521 Vanilla planifolia HOM05D005346 ORTHO05D007051 1.0e-59 234.2 196 66.3
Aa31LG2G370 Aethionema arabicum HOM05D005346 ORTHO05D007051 1.7e-59 233.4 237 59.1
Lj8A255T54 Lonicera japonica HOM05D005346 ORTHO05D007051 1.5e-58 230.3 253 57.3
ECA233G1833 Erigeron canadensis HOM05D005346 ORTHO05D007051 2.5e-58 229.6 187 71.1
CARHR048890 Cardamine hirsuta HOM05D005346 ORTHO05D007051 3.3e-58 229.2 238 59.2
Hund28689 Selenicereus undatus HOM05D005346 ORTHO05D007051 3.3e-58 229.2 234 60.3
Hund28691 Selenicereus undatus HOM05D005346 ORTHO05D007051 3.3e-58 229.2 234 60.3
unitig_749.g13414 Utricularia gibba HOM05D005346 ORTHO05D007051 3.6e-57 225.7 200 60.0
SGA_v2.0_scaffold146G36182 Striga asiatica HOM05D005346 ORTHO05D007051 6.2e-57 224.9 251 55.4
Sp2g01760 Schrenkiella parvula HOM05D005346 ORTHO05D007051 1.1e-56 224.2 238 58.0
ClCG10G003160 Citrullus lanatus HOM05D005346 ORTHO05D007051 8.9e-56 221.1 250 58.0
vmacro14041 Vaccinium macrocarpon HOM05D005346 ORTHO05D007051 1.7e-54 216.9 214 60.3
Thecc.03G262000 Theobroma cacao HOM05D005346 ORTHO05D007051 2.2e-54 216.5 182 65.4
SEGI_23485 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 9.2e-53 211.1 182 64.8
Glyma.05G052900 Glycine max HOM05D005346 ORTHO05D007051 2.3e-51 206.5 154 72.7
Ca_12281_v3 Cicer arietinum L. HOM05D002260 ORTHO05D007051 5.6e-50 201.8 150 74.7
SalBow6G4970 Salvia bowleyana HOM05D005346 ORTHO05D007051 7.3e-50 201.4 310 45.5
Os03g0249200 Oryza sativa ssp. japonica HOM05D005346 ORTHO05D007051 9.5e-50 201.1 183 60.7
MSTRG.12059 Avicennia marina HOM05D005346 ORTHO05D007051 2.4e-48 196.4 190 58.9
Gohir.D03G158100 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.7e-46 190.3 236 52.1
Pp3c9_5680 Physcomitrium patens HOM05D005346 ORTHO05D007051 1.7e-46 190.3 176 59.1
TPR.G37664 Trifolium pratense HOM05D005346 ORTHO05D007051 1.6e-44 183.7 130 73.8
SGA_v2.0_scaffold196G40944 Striga asiatica HOM05D005346 ORTHO05D007051 1.3e-43 180.6 207 48.3
SEGI_25852 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 3.6e-41 172.6 130 76.2
CBR_g59652 Chara braunii HOM05D005346 ORTHO05D007051 1.5e-39 167.2 143 61.5
Mapoly0185s0016 Marchantia polymorpha HOM05D005346 ORTHO05D007051 9.3e-37 157.9 183 51.4
arahy.Tifrunner.gnm1.ann1.IL3HUZ Arachis hypogaea HOM05D005346 ORTHO05D007051 1.9e-34 150.2 253 44.7
Gorai.005G179200 Gossypium raimondii HOM05D005346 ORTHO05D007051 1.6e-33 147.1 101 70.3
Gorai.011G192800 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.6e-33 146.0 101 70.3
SalBow1G0489 Salvia bowleyana HOM05D005346 ORTHO05D007051 6.2e-33 145.2 162 50.6
Gohir.D06G129850 Gossypium hirsutum HOM05D005346 ORTHO05D007051 6.9e-32 141.7 101 67.3
Gorai.002G177500 Gossypium raimondii HOM05D005346 ORTHO05D007051 3.8e-30 136.0 93 68.8
PRCOL_00004903 Prasinoderma coloniale HOM05D005346 ORTHO05D007051 3.3e-26 122.9 123 52.8
Cre02.g101800 Chlamydomonas reinhardtii HOM05D005346 ORTHO05D007051 2.1e-25 120.2 136 51.5
Migut.E01266 Erythranthe guttata HOM05D005346 ORTHO05D007051 2.1e-25 120.2 150 48.7
MCO12G072 Micromonas commoda HOM05D005346 ORTHO05D007051 6.2e-25 118.6 116 56.0
Actinidia14465 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.8e-24 117.1 214 42.5
Nitab4.5_0001816g0160 Nicotiana tabacum HOM05D005346 ORTHO05D020323 1.2e-23 114.4 183 43.7
Gohir.D13G182400 Gossypium hirsutum HOM05D005346 ORTHO05D007051 1.5e-23 114.0 73 74.0
VMungo1215G3342 Vigna mungo HOM05D005346 ORTHO05D007051 1.5e-23 114.0 97 70.1
Peaxi162Scf00102g01240 Petunia axillaris HOM05D005346 ORTHO05D020323 1.7e-22 110.5 206 38.3
Nitab4.5_0001265g0030 Nicotiana tabacum HOM05D005346 ORTHO05D020323 2.5e-21 106.7 223 36.3
AagrBONN_evm.TU.Sc2ySwM_369.472 Anthoceros agrestis HOM05D005346 ORTHO05D007051 3.2e-21 106.3 79 63.3
SMO164G0226 Selaginella moellendorffii HOM05D005346 ORTHO05D007051 1.2e-20 104.4 153 45.8
Sopen08g003450 Solanum pennellii HOM05D005346 ORTHO05D020323 7.9e-20 101.7 192 37.0
Solyc08g007490.3 Solanum lycopersicum HOM05D005346 ORTHO05D020323 1.3e-19 100.9 192 36.5
SMO353G0412 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 3.9e-19 99.4 162 42.6
SEGI_00698 Sequoiadendron giganteum HOM05D005346 ORTHO05D007051 1.3e-17 94.4 82 61.0
Haze_26312 Corylus avellana HOM05D005346 ORTHO05D007051 4.0e-16 89.4 159 37.7
SMO364G0639 Selaginella moellendorffii HOM05D000596 ORTHO05D001497 1.0e-11 74.7 133 39.1
Actinidia02087 Actinidia chinensis HOM05D005346 ORTHO05D007051 1.5e-07 60.8 96 46.9
CAN.G1394.34 Capsicum annuum HOM05D005346 ORTHO05D020323 1.5e-07 60.8 114 36.8
Lj6g0026400 Lotus japonicus HOM05D005346 ORTHO05D007051 2.0e-07 60.5 51 64.7
PGSC0003DMG400012509 Solanum tuberosum HOM05D005346 ORTHO05D020323 1.3e-06 57.8 122 32.0
TPR.G941 Trifolium pratense HOM05D005346 ORTHO05D007051 2.2e-06 57.0 53 69.8
Nitab4.5_0003534g0100 Nicotiana tabacum HOM05D005346 ORTHO05D007051 6.5e-06 55.5 110 40.0


User provided reference genes

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