Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G1224 Papaver somniferum HOM05D006140 ORTHO05D007834 0.0e+00 1377.8 761 100.0
PSO063G5188 Papaver somniferum HOM05D006140 ORTHO05D007834 0.0e+00 1331.6 761 97.1
TAR629G0094 Trochodendron aralioides HOM05D006140 ORTHO05D007834 1.1e-131 474.9 803 41.7
Nn1g01908 Nelumbo nucifera HOM05D006140 ORTHO05D007834 6.4e-119 432.6 810 40.1
Aqoxy3G02157 Aquilegia oxysepala HOM05D006140 ORTHO05D007834 1.4e-118 431.4 832 39.3
Dinv06909 Davidia involucrata HOM05D006140 ORTHO05D007834 2.1e-109 401.0 803 38.2
Actinidia14773 Actinidia chinensis HOM05D006140 ORTHO05D007834 1.1e-99 368.6 809 34.4
TWI60G0968 Tripterygium wilfordii HOM05D006140 ORTHO05D007834 1.6e-98 364.8 813 35.5
CiPaw.11G100200 Carya illinoinensis HOM05D006140 ORTHO05D007834 8.4e-95 352.4 803 33.6
Prupe.5G025700 Prunus persica HOM05D006140 ORTHO05D007834 5.1e-92 343.2 803 34.6
MD06G1024600 Malus domestica HOM05D006140 ORTHO05D007834 4.3e-91 340.1 658 35.3
Glyma.01G010800 Glycine max HOM05D006140 ORTHO05D007834 1.8e-89 334.7 778 35.0
Glyma.09G210300 Glycine max HOM05D006140 ORTHO05D007834 5.3e-89 333.2 772 35.0
QL12p000198 Quercus lobata HOM05D006140 ORTHO05D007834 5.3e-89 333.2 850 33.8
CSS0008724 Camellia sinensis var. sinensis HOM05D006140 ORTHO05D007834 6.9e-89 332.8 804 35.2
FvH4_5g23380 Fragaria vesca HOM05D006140 ORTHO05D007834 5.9e-88 329.7 651 35.5
FAN18G2089 Fragaria x ananassa HOM05D006140 ORTHO05D007834 1.7e-87 328.2 653 36.1
Sed0012782 Sechium edule HOM05D006140 ORTHO05D007834 1.1e-86 325.5 804 33.2
RcHm_v2.0_Chr7g0212401 Rosa chinensis HOM05D006140 ORTHO05D007834 1.9e-86 324.7 650 35.7
Potri.001G134800 Populus trichocarpa HOM05D006140 ORTHO05D007834 5.5e-86 323.2 796 32.5
Phvul.002G133700 Phaseolus vulgaris HOM05D006140 ORTHO05D007834 7.2e-86 322.8 660 34.5
FAN18G2328 Fragaria x ananassa HOM05D006140 ORTHO05D007834 9.4e-86 322.4 654 35.8
Atru.chr6.1557 Acer truncatum HOM05D006140 ORTHO05D007834 1.6e-85 321.6 697 33.7
Sc22g0001920 Simmondsia chinensis HOM05D006140 ORTHO05D007834 2.7e-85 320.9 779 32.6
Gohir.A12G205000 Gossypium hirsutum HOM05D006140 ORTHO05D007834 3.6e-85 320.5 798 31.6
ClCG09G011510 Citrullus lanatus HOM05D006140 ORTHO05D007834 4.6e-85 320.1 808 33.2
Lalb_Chr09g0325351 Lupinus albus HOM05D006140 ORTHO05D007834 4.6e-85 320.1 658 35.6
VMungo1215G1486 Vigna mungo HOM05D006140 ORTHO05D007834 7.9e-85 319.3 664 35.5
ATR0829G104 Amborella trichopoda HOM05D006140 ORTHO05D007834 2.3e-84 317.8 828 33.3
arahy.Tifrunner.gnm1.ann1.B53Y8P Arachis hypogaea HOM05D006140 ORTHO05D007834 6.7e-84 316.2 792 35.6
arahy.Tifrunner.gnm1.ann1.HKBA6R Arachis hypogaea HOM05D006140 ORTHO05D007834 6.7e-84 316.2 792 35.6
Manes.17G016001 Manihot esculenta HOM05D006140 ORTHO05D007834 5.7e-83 313.2 786 31.8
DCAR_008203 Daucus carota HOM05D006140 ORTHO05D007834 1.3e-82 312.0 517 38.7
Potri.003G098700 Populus trichocarpa HOM05D006140 ORTHO05D007834 1.3e-82 312.0 791 32.4
Gorai.008G222800 Gossypium raimondii HOM05D006140 ORTHO05D007834 1.4e-81 308.5 672 33.5
FAN08G2467 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.1e-81 307.4 628 35.2
Gohir.D12G207400 Gossypium hirsutum HOM05D006140 ORTHO05D007834 6.9e-81 306.2 672 34.4
Cfa012537 Carpinus fangiana HOM05D006140 ORTHO05D007834 1.5e-80 305.1 768 33.2
CsaV3_3G048750 Cucumis sativus L. HOM05D006140 ORTHO05D007834 2.6e-80 304.3 807 32.7
Aa31LG9G7440 Aethionema arabicum HOM05D006140 ORTHO05D007834 1.7e-79 301.6 788 31.7
HanXRQChr15g0469721 Helianthus annuus HOM05D006140 ORTHO05D007834 8.5e-79 299.3 503 38.0
ECA233G4025 Erigeron canadensis HOM05D006140 ORTHO05D007834 1.9e-78 298.1 679 33.6
Lsat_1_v5_gn_6_17700 Lactuca sativa HOM05D006140 ORTHO05D007834 1.6e-77 295.0 674 34.7
PGR042G2343 Punica granatum HOM05D006140 ORTHO05D007834 2.7e-77 294.3 728 32.6
CANSAT21G0745 Cannabis sativa HOM05D006140 ORTHO05D007834 1.4e-76 292.0 733 31.7
vmacro14212 Vaccinium macrocarpon HOM05D006140 ORTHO05D007834 1.8e-76 291.6 997 28.9
BcaC06g34418 Brassica carinata HOM05D006140 ORTHO05D007834 1.1e-75 288.9 667 33.1
C07p28720 Brassica napus HOM05D006140 ORTHO05D007834 1.1e-75 288.9 667 33.1
BolC7t43410H Brassica oleracea HOM05D006140 ORTHO05D007834 1.1e-75 288.9 667 33.1
Lj2g0005195 Lotus japonicus HOM05D006140 ORTHO05D007834 2.0e-75 288.1 771 33.7
Sabra01G0104200 Salix brachista HOM05D006140 ORTHO05D007834 4.4e-75 287.0 509 37.7
Duzib205G1045 Durio zibethinus HOM05D006140 ORTHO05D007834 2.2e-74 284.6 785 31.5
A06p46490 Brassica napus HOM05D006140 ORTHO05D007834 6.3e-74 283.1 687 32.6
BraA06t27522Z Brassica rapa HOM05D006140 ORTHO05D007834 1.4e-73 282.0 687 32.5
Sp2g10500 Schrenkiella parvula HOM05D006140 ORTHO05D007834 1.8e-73 281.6 807 31.6
AUR62027322 Chenopodium quinoa HOM05D006140 ORTHO05D007834 2.4e-73 281.2 631 34.4
BcaC06g31534 Brassica carinata HOM05D006140 ORTHO05D007834 4.1e-73 280.4 670 33.1
AUR62007410 Chenopodium quinoa HOM05D006140 ORTHO05D007834 1.2e-72 278.9 514 37.0
EL10Ac5g11927 Beta vulgaris HOM05D006140 ORTHO05D007834 3.5e-72 277.3 574 35.7
Rhsim07G0134400 Rhododendron simsii HOM05D006140 ORTHO05D007834 3.5e-72 277.3 653 33.8
THA.LOC104798454 Tarenaya hassleriana HOM05D006140 ORTHO05D007834 1.0e-71 275.8 669 31.7
CARHR176410 Cardamine hirsuta HOM05D006140 ORTHO05D007834 1.3e-71 275.4 492 36.4
Psat2g140200 Pisum sativum HOM05D006140 ORTHO05D007834 1.1e-70 272.3 780 30.6
FAN04G1734 Fragaria x ananassa HOM05D006140 ORTHO05D007834 3.6e-69 267.3 380 42.4
TPR.G19464 Trifolium pratense HOM05D006140 ORTHO05D007834 3.6e-69 267.3 665 31.7
AT5G45610 Arabidopsis thaliana HOM05D006140 ORTHO05D007834 6.1e-69 266.5 650 33.2
Thhalv10000816m.g Eutrema salsugineum HOM05D006140 ORTHO05D007834 2.3e-68 264.6 646 31.7
Sopen08g024830 Solanum pennellii HOM05D006140 ORTHO05D007834 2.6e-67 261.2 795 29.2
HPP92_020808 Vanilla planifolia HOM05D006140 ORTHO05D007834 2.8e-66 257.7 684 32.9
Migut.A00588 Erythranthe guttata HOM05D006140 ORTHO05D007834 3.7e-66 257.3 786 31.3
Ca_25157_v3 Cicer arietinum L. HOM05D006140 ORTHO05D007834 6.3e-66 256.5 787 30.1
Thecc.03G312700 Theobroma cacao HOM05D006140 ORTHO05D007834 1.8e-65 255.0 766 30.5
Solyc08g076190.3 Solanum lycopersicum HOM05D006140 ORTHO05D007834 3.1e-65 254.2 795 28.3
AL8G13070 Arabidopsis lyrata HOM05D006140 ORTHO05D007834 3.5e-64 250.8 488 35.0
Medtr5g027920 Medicago truncatula HOM05D006140 ORTHO05D007834 2.2e-63 248.1 780 31.2
SalBow1G1748 Salvia bowleyana HOM05D006140 ORTHO05D007834 5.2e-60 236.9 498 34.3
SGA_v2.0_scaffold89G27431 Striga asiatica HOM05D006140 ORTHO05D007834 1.2e-59 235.7 813 27.1
Hund11103 Selenicereus undatus HOM05D006140 ORTHO05D007834 2.6e-59 234.6 663 31.2
Carub.0008s0241 Capsella rubella HOM05D006140 ORTHO05D007834 5.7e-59 233.4 657 32.6
Peaxi162Scf00879g00021 Petunia axillaris HOM05D006140 ORTHO05D007834 2.8e-58 231.1 548 32.7
MBI04_g36019_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 1.8e-57 228.4 450 39.6
GSVIVG01012994001 Vitis vinifera HOM05D006140 ORTHO05D007834 5.9e-56 223.4 283 48.1
Ciclev10003207m.g Citrus clementina HOM05D006140 ORTHO05D007834 1.7e-55 221.9 291 45.0
Zm00001eb208860 Zea mays HOM05D006140 ORTHO05D007834 1.6e-53 215.3 526 32.3
Nitab4.5_0000543g0200 Nicotiana tabacum HOM05D006140 ORTHO05D007834 6.8e-52 209.9 811 27.4
MELO3C030376.2 Cucumis melo HOM05D006140 ORTHO05D007834 1.3e-50 205.7 876 28.3
Ah.12g055990 Amaranthus hybridus HOM05D006140 ORTHO05D007834 2.9e-47 194.5 646 29.1
Nitab4.5_0003023g0010 Nicotiana tabacum HOM05D006140 ORTHO05D007834 3.3e-46 191.0 682 27.1
PGSC0003DMG401009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 2.3e-44 184.9 275 39.6
Cc00_g09430 Coffea canephora HOM05D006140 ORTHO05D007834 1.4e-41 175.6 272 37.9
Lj3g0005794 Lotus japonicus HOM05D006140 ORTHO05D007834 1.5e-38 165.6 225 45.3
Eucgr.E01307 Eucalyptus grandis HOM05D006140 ORTHO05D007834 3.1e-36 157.9 470 30.0
SEGI_17370 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 9.8e-35 152.9 908 26.8
Haze_08125 Corylus avellana HOM05D006140 ORTHO05D007834 1.9e-30 138.7 150 51.3
unitig_32.g10971 Utricularia gibba HOM05D006140 ORTHO05D007834 4.4e-27 127.5 468 27.4
MBI04_g20983_MAGBIO Magnolia biondii HOM05D006140 ORTHO05D007834 6.4e-26 123.6 133 55.6
CDE02G1222 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 1.4e-25 122.5 151 43.7
Actinidia24581 Actinidia chinensis HOM05D006140 ORTHO05D007834 5.4e-25 120.6 325 32.6
Lj6g0014120 Lotus japonicus HOM05D006140 ORTHO05D007834 8.6e-23 113.2 149 47.7
CDE02G0505 Ceratophyllum demersum HOM05D006140 ORTHO05D007834 3.6e-21 107.8 384 29.9
Hma1.2p1_1460F.1_g284980 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 8.1e-21 106.7 149 44.3
SHI20257 Sapria himalayana HOM05D006140 ORTHO05D007834 3.0e-15 88.2 159 37.7
Cc00_g09420 Coffea canephora HOM05D006140 ORTHO05D007834 5.1e-15 87.4 311 29.3
COL.COLO4_16905 Corchorus olitorius HOM05D006140 ORTHO05D007834 5.1e-15 87.4 120 39.2
SHI20259 Sapria himalayana HOM05D006140 ORTHO05D007834 2.5e-14 85.1 220 28.2
SMO367G0412 Selaginella moellendorffii HOM05D006140 ORTHO05D007834 4.0e-12 77.8 454 23.3
Pp3c4_25200 Physcomitrium patens HOM05D006140 ORTHO05D007834 7.6e-11 73.6 809 21.8
Hma1.2p1_1819F.1_g304030 Hydrangea macrophylla HOM05D006140 ORTHO05D007834 1.6e-08 65.9 90 38.9
Cpa.g.sc16.12 Carica papaya HOM05D006140 ORTHO05D007834 1.7e-07 62.4 112 35.7
PGSC0003DMG402009319 Solanum tuberosum HOM05D006140 ORTHO05D007834 3.9e-07 61.2 414 25.6
Ciclev10003621m.g Citrus clementina HOM05D006140 ORTHO05D007834 2.5e-06 58.5 273 24.9
SEGI_32981 Sequoiadendron giganteum HOM05D006140 ORTHO05D007834 7.3e-06 57.0 458 27.3


User provided reference genes

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