Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0987 Papaver somniferum HOM05D004704 ORTHO05D005384 1.2e-308 1062.4 546 100.0
PSO063G2883 Papaver somniferum HOM05D004704 ORTHO05D005384 5.7e-295 1016.9 574 92.0
PSO063G6793 Papaver somniferum HOM05D004704 ORTHO05D005384 9.2e-253 876.7 557 83.5
TAR629G2327 Trochodendron aralioides HOM05D004704 ORTHO05D005384 9.1e-208 727.2 572 67.0
TAR627G0020 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-207 724.9 572 67.0
TAR706G0003 Trochodendron aralioides HOM05D004704 ORTHO05D005384 4.5e-207 724.9 572 67.0
TAR629G2609 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.7e-206 723.0 572 66.6
Aqoxy1G03204 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 2.0e-202 709.5 571 66.5
Nn1g04361 Nelumbo nucifera HOM05D004704 ORTHO05D005384 9.4e-197 690.6 572 64.2
MBI06_g18005_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 7.9e-196 687.6 568 63.2
COL.COLO4_31331 Corchorus olitorius HOM05D004704 ORTHO05D005384 5.2e-195 684.9 569 65.6
Duzib192G0914 Durio zibethinus HOM05D004704 ORTHO05D005384 6.7e-195 684.5 543 68.1
TWI38G0698 Tripterygium wilfordii HOM05D004704 ORTHO05D005384 6.7e-195 684.5 570 64.9
Potri.004G054500 Populus trichocarpa HOM05D004704 ORTHO05D005384 8.2e-193 677.6 570 64.4
Potri.011G064300 Populus trichocarpa HOM05D004704 ORTHO05D005384 5.9e-191 671.4 568 64.6
PGR004G2343 Punica granatum HOM05D004704 ORTHO05D005384 2.9e-190 669.1 568 63.2
Thecc.06G174000 Theobroma cacao HOM05D004704 ORTHO05D005384 8.5e-190 667.5 570 64.9
Sabra11G0046100 Salix brachista HOM05D004704 ORTHO05D005384 3.2e-189 665.6 569 63.6
Cc02_g14600 Coffea canephora HOM05D004704 ORTHO05D005384 1.4e-187 660.2 583 62.1
MBI06_g18007_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 2.6e-186 656.0 571 61.5
Manes.17G053900 Manihot esculenta HOM05D004704 ORTHO05D005384 2.6e-186 656.0 569 63.3
DCAR_004019 Daucus carota HOM05D004704 ORTHO05D005384 3.3e-186 655.6 581 61.6
Gohir.D06G134300 Gossypium hirsutum HOM05D004704 ORTHO05D005384 4.4e-186 655.2 570 63.7
Gorai.010G156000 Gossypium raimondii HOM05D004704 ORTHO05D005384 5.7e-186 654.8 571 63.4
PGR004G2271 Punica granatum HOM05D004704 ORTHO05D005384 1.7e-185 653.3 575 61.7
Sabra04G0035600 Salix brachista HOM05D004704 ORTHO05D005384 2.8e-185 652.5 568 63.2
DCAR_004020 Daucus carota HOM05D004704 ORTHO05D005384 2.9e-182 642.5 577 61.2
Eucgr.D00532 Eucalyptus grandis HOM05D004704 ORTHO05D005384 2.9e-182 642.5 575 60.7
Migut.M01052 Erythranthe guttata HOM05D004704 ORTHO05D005384 1.5e-181 640.2 572 60.1
Lsat_1_v5_gn_7_23201 Lactuca sativa HOM05D004704 ORTHO05D005384 8.0e-180 634.4 568 60.4
Nitab4.5_0002076g0080 Nicotiana tabacum HOM05D004704 ORTHO05D005384 6.8e-179 631.3 572 60.3
Lj3g0017096 Lotus japonicus HOM05D004704 ORTHO05D005384 8.8e-179 630.9 575 59.0
Glyma.13G231200 Glycine max HOM05D004704 ORTHO05D005384 1.2e-178 630.6 569 60.5
CiPaw.09G067800 Carya illinoinensis HOM05D004704 ORTHO05D005384 3.4e-178 629.0 572 62.1
Glyma.13G291900 Glycine max HOM05D004704 ORTHO05D005384 1.7e-177 626.7 572 59.6
VMungo1080G1587 Vigna mungo HOM05D004704 ORTHO05D005384 1.7e-177 626.7 573 59.0
CiPaw.09G067900 Carya illinoinensis HOM05D004704 ORTHO05D005384 2.2e-177 626.3 569 62.0
Solyc03g006230.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 2.2e-177 626.3 583 59.5
DCAR_028021 Daucus carota HOM05D004704 ORTHO05D005384 6.3e-177 624.8 572 59.6
Peaxi162Scf00200g00121 Petunia axillaris HOM05D004704 ORTHO05D005384 5.4e-176 621.7 572 60.1
Cfa000584 Carpinus fangiana HOM05D004704 ORTHO05D005384 9.1e-176 620.9 568 60.7
TAR627G1005 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.2e-175 620.5 544 62.5
HanXRQChr04g0115831 Helianthus annuus HOM05D004704 ORTHO05D005384 1.6e-175 620.2 578 58.8
ECA236G1293 Erigeron canadensis HOM05D004704 ORTHO05D005384 2.0e-175 619.8 571 60.8
Phvul.005G096400 Phaseolus vulgaris HOM05D004704 ORTHO05D005384 2.0e-175 619.8 572 58.4
ClCG01G023620 Citrullus lanatus HOM05D004704 ORTHO05D005384 8.5e-174 614.4 568 58.6
Lj1P1195T10 Lonicera japonica HOM05D004704 ORTHO05D005384 8.5e-174 614.4 417 73.1
Medtr2g091155 Medicago truncatula HOM05D004704 ORTHO05D005384 9.5e-173 610.9 575 56.7
Glyma.12G209400 Glycine max HOM05D004704 ORTHO05D005384 1.2e-172 610.5 573 57.4
PSO782G0854 Papaver somniferum HOM05D004704 ORTHO05D005384 2.1e-172 609.8 391 84.1
CsaV3_6G050770 Cucumis sativus L. HOM05D004704 ORTHO05D005384 2.8e-172 609.4 573 60.4
Manes.17G053800 Manihot esculenta HOM05D004704 ORTHO05D005384 1.4e-171 607.1 580 57.2
MELO3C007223.2 Cucumis melo HOM05D004704 ORTHO05D005384 4.0e-171 605.5 569 59.6
PGSC0003DMG400004386 Solanum tuberosum HOM05D004704 ORTHO05D005384 5.2e-171 605.1 572 58.2
Sed0013784 Sechium edule HOM05D004704 ORTHO05D005384 6.8e-171 604.7 572 57.9
Eucgr.D00531 Eucalyptus grandis HOM05D004704 ORTHO05D005384 5.7e-170 601.7 571 57.3
PGSC0003DMG400018011 Solanum tuberosum HOM05D004704 ORTHO05D005384 7.5e-170 601.3 576 57.1
CAN.G2115.3 Capsicum annuum HOM05D004704 ORTHO05D005384 1.7e-169 600.1 576 58.5
Lalb_Chr24g0400061 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-168 597.4 570 57.0
Carub.0007s2269 Capsella rubella HOM05D004704 ORTHO05D005384 1.8e-168 596.7 580 57.8
Sp7g15490 Schrenkiella parvula HOM05D004704 ORTHO05D005384 4.1e-168 595.5 582 57.9
A03p51400 Brassica napus HOM05D004704 ORTHO05D005384 5.4e-168 595.1 579 57.2
Thhalv10024794m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 9.2e-168 594.3 577 57.2
Rhsim13G0106100 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.2e-167 594.0 557 57.8
Nitab4.5_0001375g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.0e-167 593.2 555 58.9
BcaNung02719 Brassica carinata HOM05D004704 ORTHO05D005384 4.5e-167 592.0 579 57.2
BcaC06g30574 Brassica carinata HOM05D004704 ORTHO05D005384 7.8e-167 591.3 579 57.5
Psat5g275720 Pisum sativum HOM05D004704 ORTHO05D005384 1.0e-166 590.9 576 55.4
C07p49820 Brassica napus HOM05D004704 ORTHO05D005384 1.7e-166 590.1 579 57.0
BolC7t45484H Brassica oleracea HOM05D004704 ORTHO05D005384 1.7e-166 590.1 579 57.0
arahy.Tifrunner.gnm1.ann1.IMTX5S Arachis hypogaea HOM05D004704 ORTHO05D005384 2.3e-166 589.7 568 57.4
SalBow8G1161 Salvia bowleyana HOM05D004704 ORTHO05D005384 2.9e-166 589.3 505 62.8
CARHR225390 Cardamine hirsuta HOM05D004704 ORTHO05D005384 3.8e-166 589.0 580 56.9
QL05p046090 Quercus lobata HOM05D004704 ORTHO05D005384 3.8e-166 589.0 568 58.1
Aqoxy4G00468 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 6.6e-166 588.2 571 57.3
Lalb_Chr14g0367381 Lupinus albus HOM05D004704 ORTHO05D005384 1.1e-165 587.4 576 55.9
BraA08t33364Z Brassica rapa HOM05D004704 ORTHO05D005384 2.5e-165 586.3 579 56.6
AL7G35740 Arabidopsis lyrata HOM05D004704 ORTHO05D005384 7.3e-165 584.7 580 56.6
Dinv04632 Davidia involucrata HOM05D004704 ORTHO05D005384 9.5e-165 584.3 431 69.6
A08p13850 Brassica napus HOM05D004704 ORTHO05D005384 1.2e-164 583.9 579 56.6
arahy.Tifrunner.gnm1.ann1.7UF87C Arachis hypogaea HOM05D004704 ORTHO05D005384 1.6e-164 583.6 568 56.5
Rhsim13G0106000 Rhododendron simsii HOM05D004704 ORTHO05D005384 3.6e-164 582.4 581 54.6
QL05p045074 Quercus lobata HOM05D004704 ORTHO05D005384 4.7e-164 582.0 568 57.9
QL04p061454 Quercus lobata HOM05D004704 ORTHO05D005384 6.1e-164 581.6 539 61.4
Medtr2g091165 Medicago truncatula HOM05D004704 ORTHO05D005384 3.0e-163 579.3 577 54.6
ATR0602G038 Amborella trichopoda HOM05D004704 ORTHO05D005384 1.2e-162 577.4 568 55.5
Aqoxy4G00469 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 1.5e-162 577.0 470 63.0
DCAR_013058 Daucus carota HOM05D004704 ORTHO05D005384 1.3e-161 573.9 574 55.9
Aa31LG6G1280 Aethionema arabicum HOM05D004704 ORTHO05D005384 3.2e-160 569.3 582 55.3
BraA01t01002Z Brassica rapa HOM05D004704 ORTHO05D005384 4.1e-160 568.9 579 54.7
A01p10560 Brassica napus HOM05D004704 ORTHO05D005384 4.6e-159 565.5 579 54.9
Ca_01465_v3 Cicer arietinum L. HOM05D004704 ORTHO05D005384 4.6e-159 565.5 550 56.2
BolC1t01223H Brassica oleracea HOM05D004704 ORTHO05D005384 7.8e-159 564.7 579 53.7
C01p12500 Brassica napus HOM05D004704 ORTHO05D005384 1.0e-158 564.3 579 54.4
BcaB04g18480 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-158 563.9 578 55.5
BcaNung03813 Brassica carinata HOM05D004704 ORTHO05D005384 3.9e-158 562.4 579 54.1
CSS0042475 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 5.0e-158 562.0 573 57.9
Thhalv10023013m.g Eutrema salsugineum HOM05D004704 ORTHO05D005384 8.6e-158 561.2 580 53.4
BraA03t14222Z Brassica rapa HOM05D004704 ORTHO05D005384 1.2e-156 557.4 577 54.2
BcaC09g51493 Brassica carinata HOM05D004704 ORTHO05D005384 2.8e-156 556.2 576 53.6
SGA_v2.0_scaffold1G00019 Striga asiatica HOM05D004704 ORTHO05D005384 2.8e-156 556.2 572 53.5
MBI06_g45390_MAGBIO Magnolia biondii HOM05D004704 ORTHO05D005384 1.0e-155 554.3 397 69.0
Zm00001eb161990 Zea mays HOM05D004704 ORTHO05D005384 3.1e-155 552.7 578 51.6
unitig_578.g16444 Utricularia gibba HOM05D004704 ORTHO05D005384 1.2e-154 550.8 576 54.3
BcaC09g51492 Brassica carinata HOM05D004704 ORTHO05D005384 4.1e-152 542.3 591 52.1
SGA_v2.0_scaffold1G00026 Striga asiatica HOM05D004704 ORTHO05D005384 4.1e-152 542.3 566 52.8
BcaC01g00546 Brassica carinata HOM05D004704 ORTHO05D005384 1.7e-150 537.0 579 54.2
Lalb_Chr20g0121271 Lupinus albus HOM05D004704 ORTHO05D005384 3.9e-150 535.8 438 61.9
SGA_v2.0_scaffold1G00021 Striga asiatica HOM05D004704 ORTHO05D005384 1.6e-148 530.4 440 60.9
C03p81280 Brassica napus HOM05D004704 ORTHO05D005384 4.9e-145 518.8 545 55.0
Oeu041801.1 Olea europaea HOM05D004704 ORTHO05D005384 3.5e-143 512.7 571 52.4
GSVIVG01021187001 Vitis vinifera HOM05D004704 ORTHO05D005384 3.5e-143 512.7 537 55.7
Oeu041796.1 Olea europaea HOM05D004704 ORTHO05D005384 6.0e-143 511.9 568 52.5
Os01g0613100 Oryza sativa ssp. japonica HOM05D004704 ORTHO05D005384 4.3e-141 505.8 585 47.9
Oeu012062.1 Olea europaea HOM05D004704 ORTHO05D005384 1.2e-140 504.2 544 54.6
Rhsim13G0186500 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.5e-138 497.3 528 52.7
Oeu062343.1 Olea europaea HOM05D004704 ORTHO05D005384 2.4e-136 490.0 571 51.1
TPR.G11553 Trifolium pratense HOM05D004704 ORTHO05D005384 2.4e-136 490.0 575 49.2
Sopen03g002240 Solanum pennellii HOM05D004704 ORTHO05D005384 3.5e-135 486.1 574 49.0
BcaNung03810 Brassica carinata HOM05D004704 ORTHO05D005384 1.3e-134 484.2 401 61.3
CSS0042208 Camellia sinensis var. sinensis HOM05D004704 ORTHO05D005384 1.7e-134 483.8 577 51.1
BolC3t20394H Brassica oleracea HOM05D004704 ORTHO05D005384 1.4e-131 474.2 384 63.3
CDE02G3156 Ceratophyllum demersum HOM05D004704 ORTHO05D005384 4.6e-127 459.1 527 48.8
Oeu041804.1 Olea europaea HOM05D004704 ORTHO05D005384 1.5e-125 454.1 337 67.1
AT4G18540 Arabidopsis thaliana HOM05D004704 ORTHO05D005384 4.5e-122 442.6 454 55.5
SalBow8G4518 Salvia bowleyana HOM05D004704 ORTHO05D005384 6.4e-113 412.1 258 76.7
Pp3c12_12860 Physcomitrium patens HOM05D004704 ORTHO05D005384 3.9e-102 376.3 445 42.7
GSVIVG01021186001 Vitis vinifera HOM05D004704 ORTHO05D000303 2.0e-98 364.0 489 48.7
Sabra11G0045900 Salix brachista HOM05D004704 ORTHO05D005384 1.7e-92 344.4 190 84.2
Aqoxy1G03203 Aquilegia oxysepala HOM05D004704 ORTHO05D005384 3.6e-87 326.6 210 71.4
Rhsim13G0105800 Rhododendron simsii HOM05D004704 ORTHO05D005384 1.5e-85 321.2 329 52.6
Pp3c12_12910 Physcomitrium patens HOM05D004704 ORTHO05D005384 4.4e-77 293.1 380 39.7
TAR627G1161 Trochodendron aralioides HOM05D004704 ORTHO05D005384 1.9e-72 277.7 155 85.2
TAR627G0576 Trochodendron aralioides HOM05D004704 ORTHO05D005384 2.8e-68 263.8 309 51.1
Duzib235G1356 Durio zibethinus HOM05D004704 ORTHO05D005384 1.9e-64 251.1 347 50.7
Solyc02g032600.1 Solanum lycopersicum HOM05D004704 ORTHO05D005384 3.7e-60 236.9 369 41.5
Sabra11G0046000 Salix brachista HOM05D004704 ORTHO05D005384 1.0e-49 202.2 250 53.6
SGA_v2.0_scaffold1G00016 Striga asiatica HOM05D004704 ORTHO05D005384 4.7e-47 193.4 187 54.0
Lj1C1195T2 Lonicera japonica HOM05D004704 ORTHO05D005384 7.0e-43 179.5 281 43.8
SalBow2G1262 Salvia bowleyana HOM05D004704 ORTHO05D005384 1.1e-38 165.6 188 53.2
arahy.Tifrunner.gnm1.ann1.EBKJ9L Arachis hypogaea HOM05D004704 ORTHO05D005384 7.3e-32 142.9 91 72.5
arahy.Tifrunner.gnm1.ann1.UG6603 Arachis hypogaea HOM05D004704 ORTHO05D005384 6.2e-31 139.8 91 71.4
COL.COLO4_31332 Corchorus olitorius HOM05D004704 ORTHO05D005384 1.2e-23 115.5 79 68.4
SEGI_01061 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.1e-22 112.5 261 37.5
arahy.Tifrunner.gnm1.ann1.E2ZA7R Arachis hypogaea HOM05D004704 ORTHO05D005384 1.4e-22 112.1 69 72.5
arahy.Tifrunner.gnm1.ann1.96JZXU Arachis hypogaea HOM05D004704 ORTHO05D005384 5.2e-22 110.2 69 71.0
arahy.Tifrunner.gnm1.ann1.V1RFD3 Arachis hypogaea HOM05D004704 ORTHO05D005384 5.2e-22 110.2 69 71.0
Cfa023998 Carpinus fangiana HOM05D004704 ORTHO05D005384 8.4e-20 102.8 180 32.8
Rhsim06G0194600 Rhododendron simsii HOM05D000067 ORTHO05D005384 8.4e-20 102.8 115 47.8
SEGI_17553 Sequoiadendron giganteum HOM05D004704 ORTHO05D005384 1.4e-14 85.5 128 43.8
Rhsim06G0194700 Rhododendron simsii HOM05D000067 ORTHO05D000097 3.4e-13 80.9 73 56.2
arahy.Tifrunner.gnm1.ann1.ESA3XA Arachis hypogaea HOM05D004704 ORTHO05D005384 1.1e-11 75.9 51 70.6
Nitab4.5_0008860g0020 Nicotiana tabacum HOM05D004704 ORTHO05D005384 3.2e-11 74.3 88 48.9
Nitab4.5_0008860g0010 Nicotiana tabacum HOM05D004704 ORTHO05D005384 2.4e-06 58.2 155 32.9


User provided reference genes

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