Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 1.0e-129 466.8 251 100.0
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.7e-116 422.9 251 92.0
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 1.9e-80 303.1 258 68.2
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 8.1e-79 297.7 252 68.3
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.8e-78 296.6 250 69.6
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 5.3e-78 295.0 251 69.3
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 9.0e-78 294.3 253 68.0
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.5e-77 293.5 253 66.8
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 3.4e-77 292.4 258 67.4
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 4.5e-77 292.0 254 64.6
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 5.8e-77 291.6 246 66.7
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 7.6e-77 291.2 257 65.8
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.3e-76 290.4 257 64.2
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 8.4e-76 287.7 258 65.9
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.4e-75 287.0 249 66.3
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 9.3e-75 284.3 249 65.9
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.6e-74 283.5 248 66.5
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.7e-74 282.7 252 67.9
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 6.0e-74 281.6 255 67.1
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.0e-73 280.8 250 68.0
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 2.3e-73 279.6 252 64.7
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 3.0e-73 279.3 257 63.8
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 8.7e-73 277.7 257 63.8
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 1.1e-72 277.3 254 66.5
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.5e-72 276.9 253 67.2
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 4.3e-72 275.4 257 64.2
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 5.7e-72 275.0 249 66.3
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 9.6e-72 274.2 249 66.7
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 9.6e-72 274.2 257 64.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 1.3e-71 273.9 258 65.5
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 2.8e-71 272.7 252 66.3
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 8.2e-71 271.2 247 66.4
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 8.2e-71 271.2 258 64.0
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 8.2e-71 271.2 250 66.0
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 1.1e-70 270.8 258 62.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.1e-70 270.8 257 62.6
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 1.1e-70 270.8 254 64.6
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 1.1e-70 270.8 247 65.6
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 2.4e-70 269.6 254 63.8
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.1e-70 269.2 257 61.5
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 6.9e-70 268.1 257 61.5
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.0e-70 267.7 254 64.2
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 9.0e-70 267.7 287 58.9
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 9.0e-70 267.7 257 61.5
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 2.0e-69 266.5 256 62.5
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 2.0e-69 266.5 256 62.5
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.6e-69 266.2 249 62.7
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 5.8e-69 265.0 249 62.2
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 7.6e-69 264.6 252 62.7
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 1.0e-68 264.2 254 62.6
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.9e-68 262.7 257 59.5
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 5.0e-68 261.9 249 62.2
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 8.4e-68 261.2 262 59.5
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 1.1e-67 260.8 259 62.2
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 1.1e-67 260.8 249 62.2
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 1.1e-67 260.8 277 59.9
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.4e-67 260.4 253 63.2
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.4e-67 260.4 253 61.7
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 1.4e-67 260.4 257 61.1
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 3.2e-67 259.2 256 62.5
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 3.2e-67 259.2 261 60.2
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 4.2e-67 258.8 253 61.3
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 4.2e-67 258.8 243 62.6
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 7.2e-67 258.1 257 59.9
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 9.3e-67 257.7 253 62.5
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 9.3e-67 257.7 257 59.1
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 3.5e-66 255.8 252 59.1
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 4.6e-66 255.4 258 60.5
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 6.1e-66 255.0 254 62.2
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 7.9e-66 254.6 253 62.1
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 1.3e-65 253.8 249 61.0
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 8.7e-65 251.1 257 58.0
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.5e-64 250.4 250 62.0
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 1.9e-64 250.0 249 59.4
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 2.5e-64 249.6 248 61.7
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 4.3e-64 248.8 249 59.8
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 5.7e-64 248.4 243 61.3
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 5.7e-64 248.4 249 59.0
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.3e-63 247.3 246 63.0
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 1.3e-63 247.3 242 63.6
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 1.3e-63 247.3 248 58.5
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.3e-63 247.3 248 58.9
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 2.2e-63 246.5 244 60.7
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 2.8e-63 246.1 307 53.7
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 4.8e-63 245.4 224 66.1
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 6.3e-63 245.0 252 59.1
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 8.2e-63 244.6 259 59.8
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 1.2e-61 240.7 257 58.4
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.2e-61 240.7 254 61.8
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 3.4e-61 239.2 228 63.6
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 1.0e-60 237.7 255 58.4
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 1.3e-60 237.3 256 58.6
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 1.3e-60 237.3 248 60.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 2.2e-60 236.5 257 58.8
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.2e-60 236.5 253 58.9
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 2.2e-60 236.5 257 58.0
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 5.0e-60 235.3 254 58.3
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 8.5e-60 234.6 259 58.3
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.5e-59 233.0 151 81.5
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.2e-59 232.6 255 55.7
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.2e-59 232.6 306 52.0
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 3.6e-58 229.2 255 55.7
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 3.6e-58 229.2 154 77.9
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 7.9e-58 228.0 256 56.6
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 7.9e-58 228.0 259 56.4
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 1.8e-57 226.9 252 55.2
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 1.8e-57 226.9 258 57.8
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.7e-57 224.9 156 76.3
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 8.8e-57 224.6 257 58.0
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 4.3e-56 222.2 215 61.4
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 3.7e-55 219.2 269 53.9
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 4.1e-54 215.7 153 75.2
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.5e-52 208.4 205 63.4
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 1.1e-51 207.6 224 59.8
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 1.3e-47 194.1 255 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.8e-46 190.3 281 45.2
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 4.2e-43 179.1 254 47.6
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 2.0e-40 170.2 222 49.5
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.7e-37 159.8 251 45.4
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 5.9e-37 158.7 232 47.4
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 6.5e-36 155.2 194 56.2
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 9.4e-35 151.4 271 45.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 1.6e-34 150.6 177 55.9
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 4.0e-33 146.0 149 59.1
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 6.8e-33 145.2 96 75.0
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.4e-30 137.5 107 66.4
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.4e-30 137.5 181 53.0
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 1.8e-30 137.1 210 51.9
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 5.4e-30 135.6 127 59.1
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 5.5e-27 125.6 177 52.0
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 2.3e-20 103.6 126 48.4
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 3.3e-19 99.8 101 59.4
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 1.6e-18 97.4 61 80.3
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 4.7e-18 95.9 224 40.2
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 6.1e-18 95.5 149 48.3
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 9.2e-14 81.6 141 41.8
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.6e-13 80.9 55 72.7
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 1.3e-12 77.8 54 75.9
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 5.0e-12 75.9 63 61.9
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 1.1e-11 74.7 170 38.2
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 3.1e-09 66.6 40 72.5
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 1.2e-08 64.7 84 51.2
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 2.2e-07 60.5 85 45.9
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 2.9e-07 60.1 85 45.9


User provided reference genes

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