Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PSO782G0716 Papaver somniferum HOM05D004837 ORTHO05D005741 0.0e+00 1239.2 669 100.0
PSO063G6385 Papaver somniferum HOM05D004837 ORTHO05D005741 0.0e+00 1224.9 670 99.1
TAR629G1790 Trochodendron aralioides HOM05D004837 ORTHO05D005741 1.5e-308 1062.4 666 86.5
Aqoxy3G03933 Aquilegia oxysepala HOM05D004837 ORTHO05D005741 1.5e-305 1052.4 671 84.8
CSS0011479 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 7.0e-303 1043.5 664 84.5
CSS0007108 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 5.9e-302 1040.4 664 84.3
Actinidia35081 Actinidia chinensis HOM05D004837 ORTHO05D005741 4.0e-298 1027.7 670 82.7
Nn4g23774 Nelumbo nucifera HOM05D004837 ORTHO05D005741 1.8e-295 1018.8 666 82.6
TWI15G0076 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 1.7e-293 1012.3 663 81.6
Potri.012G061000 Populus trichocarpa HOM05D004837 ORTHO05D005741 8.6e-293 1010.0 663 81.9
Lj5C146T15 Lonicera japonica HOM05D004837 ORTHO05D005741 2.5e-292 1008.4 634 85.3
Cfa019797 Carpinus fangiana HOM05D004837 ORTHO05D005741 5.6e-292 1007.3 663 82.1
Prupe.8G104400 Prunus persica HOM05D004837 ORTHO05D005741 7.3e-292 1006.9 669 81.3
CiPaw.15G128500 Carya illinoinensis HOM05D004837 ORTHO05D005741 9.5e-292 1006.5 664 81.8
COL.COLO4_16258 Corchorus olitorius HOM05D004837 ORTHO05D005741 1.6e-291 1005.7 665 81.7
Atru.chr9.792 Acer truncatum HOM05D004837 ORTHO05D005741 4.7e-291 1004.2 671 80.9
TWI81G0923 Tripterygium wilfordii HOM05D004837 ORTHO05D005741 8.0e-291 1003.4 663 80.7
CANSAT80G2884 Cannabis sativa HOM05D004837 ORTHO05D005741 1.4e-290 1002.7 673 80.2
ClCG03G012520 Citrullus lanatus HOM05D004837 ORTHO05D005741 8.9e-290 1000.0 665 80.6
Gorai.006G062600 Gossypium raimondii HOM05D004837 ORTHO05D005741 2.9e-288 995.0 663 80.5
Gohir.A09G047000 Gossypium hirsutum HOM05D004837 ORTHO05D005741 3.7e-288 994.6 663 80.5
Thecc.03G030500 Theobroma cacao HOM05D004837 ORTHO05D005741 4.9e-288 994.2 663 81.3
GSVIVG01008258001 Vitis vinifera HOM05D004837 ORTHO05D005741 8.3e-288 993.4 649 83.1
Solyc06g069210.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 2.4e-287 991.9 665 80.5
MD10G1081900 Malus domestica HOM05D004837 ORTHO05D005741 4.1e-287 991.1 665 80.6
Gohir.D09G047500 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.6e-286 989.2 663 80.2
Ciclev10019149m.g Citrus clementina HOM05D004837 ORTHO05D005741 3.0e-285 984.9 664 79.8
vmacro16451 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 5.0e-285 984.2 727 74.8
vmacro23526 Vaccinium macrocarpon HOM05D004837 ORTHO05D005741 5.0e-285 984.2 727 74.8
CSS0025722 Camellia sinensis var. sinensis HOM05D004837 ORTHO05D005741 6.6e-285 983.8 664 81.3
CsaV3_1G043510 Cucumis sativus L. HOM05D004837 ORTHO05D005741 6.6e-285 983.8 665 79.7
Manes.05G138800 Manihot esculenta HOM05D004837 ORTHO05D005741 6.6e-285 983.8 663 81.0
Medtr8g103950 Medicago truncatula HOM05D004837 ORTHO05D005741 6.6e-285 983.8 667 80.7
AT3G18480 Arabidopsis thaliana HOM05D004837 ORTHO05D005741 4.3e-284 981.1 675 78.7
FvH4_5g12492 Fragaria vesca HOM05D004837 ORTHO05D005741 9.5e-284 979.9 665 79.8
RcHm_v2.0_Chr7g0184861 Rosa chinensis HOM05D004837 ORTHO05D005741 9.5e-284 979.9 665 79.8
Manes.01G012900 Manihot esculenta HOM05D004837 ORTHO05D005741 1.2e-283 979.5 663 80.2
HanXRQChr17g0558331 Helianthus annuus HOM05D004837 ORTHO05D005741 2.1e-283 978.8 661 79.4
arahy.Tifrunner.gnm1.ann1.SIGA6A Arachis hypogaea HOM05D004837 ORTHO05D005741 2.8e-283 978.4 665 79.7
ECA233G3214 Erigeron canadensis HOM05D004837 ORTHO05D005741 3.6e-283 978.0 647 80.4
FAN18G2885 Fragaria x ananassa HOM05D004837 ORTHO05D005741 4.7e-283 977.6 665 79.7
Thhalv10020192m.g Eutrema salsugineum HOM05D004837 ORTHO05D005741 6.2e-283 977.2 676 78.4
FAN08G2631 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.2e-283 977.2 665 80.0
Lalb_Chr22g0352981 Lupinus albus HOM05D004837 ORTHO05D005741 1.4e-282 976.1 661 80.6
Sed0018155 Sechium edule HOM05D004837 ORTHO05D005741 1.4e-282 976.1 666 79.3
Glyma.07G089600 Glycine max HOM05D004837 ORTHO05D005741 4.0e-282 974.5 670 79.0
AL3G31770 Arabidopsis lyrata HOM05D004837 ORTHO05D005741 6.8e-282 973.8 674 78.2
Lsat_1_v5_gn_8_147101 Lactuca sativa HOM05D004837 ORTHO05D005741 1.5e-281 972.6 665 77.9
Sopen06g026470 Solanum pennellii HOM05D004837 ORTHO05D005741 2.6e-281 971.8 665 79.5
Rhsim12G0143900 Rhododendron simsii HOM05D004837 ORTHO05D005741 4.4e-281 971.1 634 81.9
Lj2g0006103 Lotus japonicus HOM05D004837 ORTHO05D005741 1.3e-280 969.5 664 79.7
THA.LOC104821845 Tarenaya hassleriana HOM05D004837 ORTHO05D005741 1.7e-280 969.1 670 77.9
Glyma.09G187100 Glycine max HOM05D004837 ORTHO05D005741 4.1e-279 964.5 663 78.6
Aa31LG8G5290 Aethionema arabicum HOM05D004837 ORTHO05D005741 7.0e-279 963.8 677 77.5
BolC5t33444H Brassica oleracea HOM05D004837 ORTHO05D005741 3.9e-277 958.0 676 77.1
Lj4g0025474 Lotus japonicus HOM05D004837 ORTHO05D005741 6.6e-277 957.2 665 79.2
Eucgr.B00707 Eucalyptus grandis HOM05D004837 ORTHO05D005741 2.3e-274 948.7 676 77.7
FAN04G0597 Fragaria x ananassa HOM05D004837 ORTHO05D005741 2.3e-274 948.7 665 77.9
FAN18G2415 Fragaria x ananassa HOM05D004837 ORTHO05D005741 6.8e-274 947.2 714 74.2
Carub.0003s1824 Capsella rubella HOM05D004837 ORTHO05D005741 8.9e-274 946.8 676 76.6
DCAR_004539 Daucus carota HOM05D004837 ORTHO05D005741 1.2e-273 946.4 660 77.6
CARHR093830 Cardamine hirsuta HOM05D004837 ORTHO05D005741 3.4e-273 944.9 678 76.1
arahy.Tifrunner.gnm1.ann1.7R0LHH Arachis hypogaea HOM05D004837 ORTHO05D005741 4.4e-273 944.5 714 73.2
Duzib084G1378 Durio zibethinus HOM05D004837 ORTHO05D005741 7.5e-273 943.7 669 76.7
Ca_25454_v3 Cicer arietinum L. HOM05D004837 ORTHO05D005741 9.8e-273 943.3 667 77.5
TPR.G21711 Trifolium pratense HOM05D004837 ORTHO05D005741 9.8e-273 943.3 639 80.6
Lalb_Chr24g0397611 Lupinus albus HOM05D004837 ORTHO05D005741 6.4e-272 940.6 667 77.7
arahy.Tifrunner.gnm1.ann1.71FAZ0 Arachis hypogaea HOM05D004837 ORTHO05D005741 8.3e-272 940.3 708 73.0
Phvul.004G160100 Phaseolus vulgaris HOM05D004837 ORTHO05D005741 3.5e-270 934.9 664 77.1
BolC1t04537H Brassica oleracea HOM05D004837 ORTHO05D005741 4.6e-270 934.5 677 75.3
C05p47190 Brassica napus HOM05D004837 ORTHO05D005741 6.0e-270 934.1 676 75.6
BcaC05g28614 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-269 932.6 676 75.4
QL10p023827 Quercus lobata HOM05D004837 ORTHO05D005741 1.7e-269 932.6 669 75.9
Cpa.g.sc13.20 Carica papaya HOM05D004837 ORTHO05D005741 2.3e-269 932.2 660 77.4
MBI13_g10043_MAGBIO Magnolia biondii HOM05D004837 ORTHO05D005741 2.1e-267 925.6 658 78.0
BcaC09g48805 Brassica carinata HOM05D004837 ORTHO05D005741 3.4e-265 918.3 677 74.6
Sp3g16570 Schrenkiella parvula HOM05D004837 ORTHO05D005741 3.4e-265 918.3 675 74.8
C01p45740 Brassica napus HOM05D004837 ORTHO05D005741 9.9e-265 916.8 677 74.4
BcaB04g20769 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-264 916.0 673 74.6
Sabra12G0044300 Salix brachista HOM05D004837 ORTHO05D005741 1.9e-263 912.5 673 76.2
SGA_v2.0_scaffold10G05151 Striga asiatica HOM05D004837 ORTHO05D005741 5.4e-263 911.0 671 75.1
unitig_37.g12022 Utricularia gibba HOM05D004837 ORTHO05D005741 7.1e-263 910.6 659 73.9
MSTRG.14939 Avicennia marina HOM05D004837 ORTHO05D005741 6.0e-262 907.5 665 74.9
Dinv40420 Davidia involucrata HOM05D004837 ORTHO05D005741 6.0e-262 907.5 573 85.5
BcaB06g25891 Brassica carinata HOM05D004837 ORTHO05D005741 1.7e-261 906.0 674 74.2
A01p35930 Brassica napus HOM05D004837 ORTHO05D005741 1.5e-260 902.9 676 73.7
Peaxi162Scf00013g00943 Petunia axillaris HOM05D004837 ORTHO05D005741 4.3e-260 901.4 634 77.4
Sc10g0009510 Simmondsia chinensis HOM05D004837 ORTHO05D005741 2.8e-259 898.7 637 77.7
Migut.M00003 Erythranthe guttata HOM05D004837 ORTHO05D005741 8.1e-259 897.1 665 74.4
PGR083G0937 Punica granatum HOM05D004837 ORTHO05D005741 1.1e-258 896.7 663 74.8
CDE11G0344 Ceratophyllum demersum HOM05D004837 ORTHO05D005741 3.1e-258 895.2 651 76.0
Nitab4.5_0010565g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.1e-258 895.2 712 71.2
A05p31170 Brassica napus HOM05D004837 ORTHO05D005741 3.4e-257 891.7 675 73.2
BraA05t21958Z Brassica rapa HOM05D004837 ORTHO05D005741 3.4e-257 891.7 675 73.2
BraA01t03672Z Brassica rapa HOM05D004837 ORTHO05D005741 3.8e-256 888.3 707 70.6
Cc04_g07300 Coffea canephora HOM05D004837 ORTHO05D005741 5.4e-255 884.4 664 73.9
Haze_18623 Corylus avellana HOM05D004837 ORTHO05D005741 6.0e-254 880.9 1013 54.4
Ah.02g115350 Amaranthus hybridus HOM05D004837 ORTHO05D005741 7.8e-254 880.6 664 73.8
arahy.Tifrunner.gnm1.ann1.9R3N8Z Arachis hypogaea HOM05D004837 ORTHO05D005741 1.7e-253 879.4 608 78.9
VMungo0464G1696 Vigna mungo HOM05D004837 ORTHO05D005741 2.4e-250 869.0 664 73.6
Hund02403 Selenicereus undatus HOM05D004837 ORTHO05D005741 3.8e-248 861.7 622 76.8
EL10Ac5g11426 Beta vulgaris HOM05D004837 ORTHO05D005741 8.4e-248 860.5 664 72.7
Os03g0710900 Oryza sativa ssp. japonica HOM05D004837 ORTHO05D005741 2.4e-247 859.0 649 72.7
Nitab4.5_0001432g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 3.2e-247 858.6 698 69.9
AUR62025880 Chenopodium quinoa HOM05D004837 ORTHO05D005741 7.1e-247 857.4 670 71.8
AUR62029852 Chenopodium quinoa HOM05D004837 ORTHO05D005741 1.2e-246 856.7 670 71.6
HPP92_013262 Vanilla planifolia HOM05D004837 ORTHO05D005741 3.9e-245 851.7 669 70.7
Nitab4.5_0008699g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 2.5e-244 849.0 690 69.9
ATR0021G039 Amborella trichopoda HOM05D004837 ORTHO05D005741 3.6e-243 845.1 666 71.2
SEGI_01686 Sequoiadendron giganteum HOM05D004837 ORTHO05D005741 1.2e-241 840.1 653 71.7
Zm00001eb216420 Zea mays HOM05D004837 ORTHO05D005741 1.4e-239 833.2 649 70.7
Nitab4.5_0001599g0070 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.0e-237 827.0 698 67.5
Mapoly0091s0053 Marchantia polymorpha HOM05D004837 ORTHO05D005741 1.0e-221 773.9 665 65.6
Pp3c3_5600 Physcomitrium patens HOM05D004837 ORTHO05D005741 7.7e-217 757.7 672 63.7
Oeu016160.3 Olea europaea HOM05D004837 ORTHO05D005741 1.9e-215 753.1 713 62.8
Psat7g012560 Pisum sativum HOM05D004837 ORTHO05D005741 2.7e-214 749.2 551 76.8
SMO147G0276 Selaginella moellendorffii HOM05D004837 ORTHO05D005741 4.4e-212 741.9 652 63.7
Pp3c25_10040 Physcomitrium patens HOM05D004837 ORTHO05D005741 5.5e-207 724.9 652 62.9
PGSC0003DMG400004053 Solanum tuberosum HOM05D004837 ORTHO05D005741 5.9e-169 598.6 424 79.0
CBR_g38539 Chara braunii HOM05D004837 ORTHO05D005741 4.1e-162 575.9 678 50.3
MELO3C015107.2 Cucumis melo HOM05D004837 ORTHO05D005741 1.2e-161 574.3 401 79.6
Actinidia31023 Actinidia chinensis HOM05D004837 ORTHO05D005741 2.5e-143 513.5 347 77.5
HPP92_013216 Vanilla planifolia HOM05D004837 ORTHO05D005741 1.3e-136 491.1 343 74.3
AagrBONN_evm.TU.Sc2ySwM_228.1000 Anthoceros agrestis HOM05D004837 ORTHO05D005741 2.6e-132 476.9 583 50.8
CAN.G423.1 Capsicum annuum HOM05D004837 ORTHO05D005741 9.7e-111 405.2 414 60.6
Atru.chr9.1054 Acer truncatum HOM05D004837 ORTHO05D005741 2.2e-94 350.9 501 48.3
Atru.chr9.1055 Acer truncatum HOM05D004837 ORTHO05D005741 6.5e-91 339.3 507 47.9
HPP92_013215 Vanilla planifolia HOM05D004837 ORTHO05D005741 7.2e-82 309.3 273 67.0
Cre08.g382650 Chlamydomonas reinhardtii HOM05D004837 ORTHO05D005741 9.7e-79 298.9 711 32.9
Prupe.8G103800 Prunus persica HOM05D004837 ORTHO05D005741 4.3e-50 203.8 774 30.4
MELO3C029547.2 Cucumis melo HOM05D004837 ORTHO05D005741 2.8e-49 201.1 185 61.6
Gorai.008G286000 Gossypium raimondii HOM05D004837 ORTHO05D005741 6.2e-49 199.9 560 31.8
CAN.G587.83 Capsicum annuum HOM05D004837 ORTHO05D005741 1.4e-48 198.7 152 70.4
SHI30382 Sapria himalayana HOM05D004837 ORTHO05D005741 4.4e-47 193.7 125 78.4
Gohir.D12G266250 Gossypium hirsutum HOM05D004837 ORTHO05D005741 1.4e-45 188.7 151 67.5
Nitab4.5_0010701g0010 Nicotiana tabacum HOM05D004837 ORTHO05D005741 1.5e-39 168.7 94 89.4
PRCOL_00005675 Prasinoderma coloniale HOM05D004837 ORTHO05D005741 3.8e-30 137.5 599 26.5
Ah.11g042150 Amaranthus hybridus HOM05D004837 ORTHO05D005741 1.1e-26 125.9 91 78.0
Cfa021462 Carpinus fangiana HOM05D004837 ORTHO05D005741 5.6e-26 123.6 683 22.1
Solyc03g119670.3 Solanum lycopersicum HOM05D004837 ORTHO05D005741 6.2e-17 93.6 71 67.6
MCO10G228 Micromonas commoda HOM05D004837 ORTHO05D005741 8.1e-17 93.2 687 23.3
BcaC07g39700 Brassica carinata HOM05D004837 ORTHO05D026816 1.5e-15 89.0 109 56.0
BolC8t50465H Brassica oleracea HOM05D004837 ORTHO05D005741 2.6e-15 88.2 82 67.1
Actinidia31022 Actinidia chinensis HOM05D004837 ORTHO05D005741 7.9e-12 76.6 199 37.7
C08p28590 Brassica napus HOM05D004837 ORTHO05D005741 1.3e-11 75.9 82 62.2
DCAR_013034 Daucus carota HOM05D004837 ORTHO05D005741 1.2e-07 62.8 56 66.1
Nn3g17783 Nelumbo nucifera HOM05D004837 ORTHO05D005741 6.4e-06 57.0 61 57.4
Hund02405 Selenicereus undatus HOM05D004837 ORTHO05D005741 6.4e-06 57.0 28 92.9


User provided reference genes

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